data_8I5 # _chem_comp.id 8I5 _chem_comp.name "3N methyl nemycin B" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H48 N6 O13" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-19 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 628.670 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8I5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Q10 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8I5 C6 C1 C 0 1 N N N 11.057 41.989 19.436 3.478 -3.201 -2.454 C6 8I5 1 8I5 C14 C2 C 0 1 N N R 8.557 44.037 26.624 -1.663 2.078 0.516 C14 8I5 2 8I5 C15 C3 C 0 1 N N R 8.727 42.551 26.924 -2.008 0.851 1.389 C15 8I5 3 8I5 C16 C4 C 0 1 N N S 9.752 42.149 25.864 -0.708 0.573 2.176 C16 8I5 4 8I5 C10 C5 C 0 1 N N R 10.410 45.534 22.375 2.922 0.870 -0.284 C10 8I5 5 8I5 O11 O1 O 0 1 N N N 9.340 44.614 24.401 0.693 1.775 -0.053 O11 8I5 6 8I5 C12 C6 C 0 1 N N S 8.572 46.753 23.626 2.482 3.311 -0.583 C12 8I5 7 8I5 C13 C7 C 0 1 N N S 9.759 44.432 25.761 -0.195 2.396 0.878 C13 8I5 8 8I5 O1 O2 O 0 1 N N N 11.678 44.878 22.485 2.541 -0.305 0.434 O1 8I5 9 8I5 CH3 C8 C 0 1 N N N 11.383 47.781 19.470 6.640 0.265 -0.211 CH3 8I5 10 8I5 C1 C9 C 0 1 N N R 11.650 43.485 22.800 1.474 -1.037 -0.172 C1 8I5 11 8I5 C11 C10 C 0 1 N N R 9.782 45.818 23.754 2.074 2.053 0.187 C11 8I5 12 8I5 C17 C11 C 0 1 N N N 10.538 40.867 26.107 -1.034 0.119 3.600 C17 8I5 13 8I5 C18 C12 C 0 1 N N R 7.368 40.642 27.521 -3.745 -0.374 0.282 C18 8I5 14 8I5 C19 C13 C 0 1 N N S 6.803 39.540 26.590 -4.028 -1.724 -0.384 C19 8I5 15 8I5 C2 C14 C 0 1 N N S 13.083 43.054 23.135 0.953 -2.088 0.812 C2 8I5 16 8I5 C20 C15 C 0 1 N N R 5.478 38.891 27.024 -5.515 -1.805 -0.742 C20 8I5 17 8I5 C21 C16 C 0 1 N N S 5.211 39.018 28.520 -5.877 -0.623 -1.647 C21 8I5 18 8I5 C22 C17 C 0 1 N N S 5.318 40.483 28.922 -5.522 0.683 -0.933 C22 8I5 19 8I5 C23 C18 C 0 1 N N N 4.372 41.403 28.139 -5.825 1.867 -1.854 C23 8I5 20 8I5 C3 C19 C 0 1 N N R 13.930 42.847 21.876 2.076 -3.081 1.129 C3 8I5 21 8I5 C4 C20 C 0 1 N N S 13.181 42.045 20.810 2.575 -3.704 -0.178 C4 8I5 22 8I5 C5 C21 C 0 1 N N R 11.827 42.697 20.542 3.034 -2.591 -1.123 C5 8I5 23 8I5 C7 C22 C 0 1 N N R 8.920 48.034 22.866 3.960 3.609 -0.326 C7 8I5 24 8I5 C8 C23 C 0 1 N N N 9.399 47.682 21.467 4.808 2.426 -0.797 C8 8I5 25 8I5 C9 C24 C 0 1 N N S 10.660 46.827 21.579 4.401 1.168 -0.028 C9 8I5 26 8I5 N19 N1 N 0 1 N N N 2.964 41.032 28.375 -5.485 3.121 -1.168 N19 8I5 27 8I5 N2 N2 N 0 1 N N N 13.065 41.832 23.963 -0.180 -2.805 0.210 N2 8I5 28 8I5 N23 N3 N 0 1 N N N 7.809 38.484 26.334 -3.686 -2.810 0.543 N23 8I5 29 8I5 N6 N4 N 0 1 N N N 10.832 42.975 18.363 4.057 -2.153 -3.305 N6 8I5 30 8I5 N7 N5 N 0 1 N N N 7.756 48.940 22.778 4.352 4.817 -1.065 N7 8I5 31 8I5 N9 N6 N 0 1 N N N 11.193 46.529 20.227 5.215 0.032 -0.480 N9 8I5 32 8I5 O12 O3 O 0 1 N N N 8.065 47.073 24.931 1.690 4.416 -0.143 O12 8I5 33 8I5 O14 O4 O 0 1 N N N 8.503 44.805 27.829 -2.510 3.181 0.845 O14 8I5 34 8I5 O16 O5 O 0 1 N N N 10.614 43.286 25.805 -0.012 1.838 2.198 O16 8I5 35 8I5 O17 O6 O 0 1 N N N 10.062 39.899 25.163 0.173 -0.244 4.273 O17 8I5 36 8I5 O18 O7 O 0 1 N N N 7.471 41.875 26.788 -2.349 -0.268 0.568 O18 8I5 37 8I5 O20 O8 O 0 1 N N N 5.473 37.506 26.636 -6.298 -1.751 0.452 O20 8I5 38 8I5 O21 O9 O 0 1 N N N 3.913 38.502 28.848 -5.141 -0.715 -2.869 O21 8I5 39 8I5 O22 O10 O 0 1 N N N 6.689 40.884 28.775 -4.132 0.681 -0.600 O22 8I5 40 8I5 O3 O11 O 0 1 N N N 15.163 42.193 22.221 1.577 -4.108 1.989 O3 8I5 41 8I5 O4 O12 O 0 1 N N N 13.954 41.996 19.601 3.671 -4.579 0.098 O4 8I5 42 8I5 O5 O13 O 0 1 N N N 11.055 42.707 21.744 1.952 -1.686 -1.352 O5 8I5 43 8I5 H1 H1 H 0 1 N N N 10.093 41.624 19.821 4.226 -3.973 -2.268 H1 8I5 44 8I5 H2 H2 H 0 1 N N N 11.643 41.141 19.052 2.618 -3.644 -2.956 H2 8I5 45 8I5 H3 H3 H 0 1 N N N 7.637 44.180 26.039 -1.752 1.832 -0.542 H3 8I5 46 8I5 H4 H4 H 0 1 N N N 9.151 42.414 27.930 -2.825 1.086 2.072 H4 8I5 47 8I5 H5 H5 H 0 1 N N N 9.223 42.046 24.905 -0.110 -0.182 1.666 H5 8I5 48 8I5 H6 H6 H 0 1 N N N 9.714 44.904 21.802 2.763 0.711 -1.351 H6 8I5 49 8I5 H7 H7 H 0 1 N N N 7.794 46.222 23.057 2.323 3.152 -1.649 H7 8I5 50 8I5 H8 H8 H 0 1 N N N 10.248 45.330 26.166 -0.032 3.474 0.896 H8 8I5 51 8I5 H9 H9 H 0 1 N N N 11.778 47.549 18.470 7.228 -0.544 -0.642 H9 8I5 52 8I5 H10 H10 H 0 1 N N N 10.418 48.300 19.372 6.944 1.212 -0.657 H10 8I5 53 8I5 H11 H11 H 0 1 N N N 12.094 48.428 20.004 6.805 0.301 0.866 H11 8I5 54 8I5 H12 H12 H 0 1 N N N 11.049 43.347 23.711 0.667 -0.353 -0.434 H12 8I5 55 8I5 H13 H13 H 0 1 N N N 10.538 46.316 24.379 2.233 2.212 1.253 H13 8I5 56 8I5 H14 H14 H 0 1 N N N 10.369 40.509 27.133 -1.519 0.934 4.139 H14 8I5 57 8I5 H15 H15 H 0 1 N N N 11.612 41.048 25.954 -1.702 -0.741 3.564 H15 8I5 58 8I5 H16 H16 H 0 1 N N N 8.393 40.328 27.768 -4.313 -0.300 1.209 H16 8I5 59 8I5 H17 H17 H 0 1 N N N 6.603 40.030 25.626 -3.429 -1.815 -1.291 H17 8I5 60 8I5 H18 H18 H 0 1 N N N 13.546 43.862 23.720 0.628 -1.599 1.730 H18 8I5 61 8I5 H19 H19 H 0 1 N N N 4.666 39.410 26.494 -5.713 -2.740 -1.267 H19 8I5 62 8I5 H20 H20 H 0 1 N N N 5.983 38.451 29.061 -6.945 -0.644 -1.863 H20 8I5 63 8I5 H21 H21 H 0 1 N N N 5.043 40.556 29.984 -6.114 0.771 -0.021 H21 8I5 64 8I5 H22 H22 H 0 1 N N N 4.592 41.316 27.065 -5.234 1.779 -2.765 H22 8I5 65 8I5 H23 H23 H 0 1 N N N 4.530 42.442 28.463 -6.885 1.867 -2.107 H23 8I5 66 8I5 H24 H24 H 0 1 N N N 14.155 43.838 21.455 2.896 -2.558 1.622 H24 8I5 67 8I5 H25 H25 H 0 1 N N N 13.013 41.026 21.189 1.768 -4.268 -0.645 H25 8I5 68 8I5 H26 H26 H 0 1 N N N 12.008 43.733 20.220 3.868 -2.053 -0.673 H26 8I5 69 8I5 H27 H27 H 0 1 N N N 9.736 48.545 23.398 4.119 3.768 0.740 H27 8I5 70 8I5 H28 H28 H 0 1 N N N 9.625 48.604 20.911 4.649 2.267 -1.864 H28 8I5 71 8I5 H29 H29 H 0 1 N N N 8.616 47.118 20.939 5.861 2.638 -0.615 H29 8I5 72 8I5 H30 H30 H 0 1 N N N 11.414 47.413 22.125 4.560 1.327 1.039 H30 8I5 73 8I5 H31 H31 H 0 1 N N N 2.366 41.643 27.856 -5.676 3.918 -1.756 H31 8I5 74 8I5 H32 H32 H 0 1 N N N 2.814 40.089 28.079 -5.973 3.195 -0.288 H32 8I5 75 8I5 H34 H34 H 0 1 N N N 12.507 41.989 24.778 -0.932 -2.170 -0.013 H34 8I5 76 8I5 H35 H35 H 0 1 N N N 12.677 41.077 23.434 0.112 -3.321 -0.607 H35 8I5 77 8I5 H37 H37 H 0 1 N N N 8.671 38.905 26.052 -2.709 -2.777 0.794 H37 8I5 78 8I5 H38 H38 H 0 1 N N N 7.955 37.954 27.169 -4.271 -2.782 1.365 H38 8I5 79 8I5 H40 H40 H 0 1 N N N 10.326 42.545 17.615 4.444 -2.546 -4.149 H40 8I5 80 8I5 H41 H41 H 0 1 N N N 10.304 43.744 18.723 3.374 -1.442 -3.517 H41 8I5 81 8I5 H43 H43 H 0 1 N N N 7.442 49.171 23.699 5.325 5.035 -0.912 H43 8I5 82 8I5 H44 H44 H 0 1 N N N 8.020 49.776 22.297 4.154 4.719 -2.049 H44 8I5 83 8I5 H46 H46 H 0 1 N N N 10.547 45.942 19.739 5.058 -0.158 -1.459 H46 8I5 84 8I5 H48 H48 H 0 1 N N N 7.852 46.271 25.394 1.894 5.249 -0.589 H48 8I5 85 8I5 H49 H49 H 0 1 N N N 7.749 44.538 28.342 -2.336 3.979 0.326 H49 8I5 86 8I5 H50 H50 H 0 1 N N N 10.531 39.081 25.284 0.042 -0.542 5.183 H50 8I5 87 8I5 H51 H51 H 0 1 N N N 4.655 37.105 26.904 -7.252 -1.798 0.299 H51 8I5 88 8I5 H52 H52 H 0 1 N N N 3.764 38.589 29.782 -5.313 -1.522 -3.372 H52 8I5 89 8I5 H53 H53 H 0 1 N N N 15.617 42.701 22.883 2.237 -4.772 2.231 H53 8I5 90 8I5 H54 H54 H 0 1 N N N 14.794 41.589 19.778 3.452 -5.307 0.696 H54 8I5 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8I5 N6 C6 SING N N 1 8I5 C6 C5 SING N N 2 8I5 CH3 N9 SING N N 3 8I5 O4 C4 SING N N 4 8I5 N9 C9 SING N N 5 8I5 C5 C4 SING N N 6 8I5 C5 O5 SING N N 7 8I5 C4 C3 SING N N 8 8I5 C8 C9 SING N N 9 8I5 C8 C7 SING N N 10 8I5 C9 C10 SING N N 11 8I5 O5 C1 SING N N 12 8I5 C3 O3 SING N N 13 8I5 C3 C2 SING N N 14 8I5 C10 O1 SING N N 15 8I5 C10 C11 SING N N 16 8I5 O1 C1 SING N N 17 8I5 N7 C7 SING N N 18 8I5 C1 C2 SING N N 19 8I5 C7 C12 SING N N 20 8I5 C2 N2 SING N N 21 8I5 C12 C11 SING N N 22 8I5 C12 O12 SING N N 23 8I5 C11 O11 SING N N 24 8I5 O11 C13 SING N N 25 8I5 O17 C17 SING N N 26 8I5 C13 O16 SING N N 27 8I5 C13 C14 SING N N 28 8I5 O16 C16 SING N N 29 8I5 C16 C17 SING N N 30 8I5 C16 C15 SING N N 31 8I5 N23 C19 SING N N 32 8I5 C19 C20 SING N N 33 8I5 C19 C18 SING N N 34 8I5 C14 C15 SING N N 35 8I5 C14 O14 SING N N 36 8I5 O20 C20 SING N N 37 8I5 O18 C15 SING N N 38 8I5 O18 C18 SING N N 39 8I5 C20 C21 SING N N 40 8I5 C18 O22 SING N N 41 8I5 C23 N19 SING N N 42 8I5 C23 C22 SING N N 43 8I5 C21 O21 SING N N 44 8I5 C21 C22 SING N N 45 8I5 O22 C22 SING N N 46 8I5 C6 H1 SING N N 47 8I5 C6 H2 SING N N 48 8I5 C14 H3 SING N N 49 8I5 C15 H4 SING N N 50 8I5 C16 H5 SING N N 51 8I5 C10 H6 SING N N 52 8I5 C12 H7 SING N N 53 8I5 C13 H8 SING N N 54 8I5 CH3 H9 SING N N 55 8I5 CH3 H10 SING N N 56 8I5 CH3 H11 SING N N 57 8I5 C1 H12 SING N N 58 8I5 C11 H13 SING N N 59 8I5 C17 H14 SING N N 60 8I5 C17 H15 SING N N 61 8I5 C18 H16 SING N N 62 8I5 C19 H17 SING N N 63 8I5 C2 H18 SING N N 64 8I5 C20 H19 SING N N 65 8I5 C21 H20 SING N N 66 8I5 C22 H21 SING N N 67 8I5 C23 H22 SING N N 68 8I5 C23 H23 SING N N 69 8I5 C3 H24 SING N N 70 8I5 C4 H25 SING N N 71 8I5 C5 H26 SING N N 72 8I5 C7 H27 SING N N 73 8I5 C8 H28 SING N N 74 8I5 C8 H29 SING N N 75 8I5 C9 H30 SING N N 76 8I5 N19 H31 SING N N 77 8I5 N19 H32 SING N N 78 8I5 N2 H34 SING N N 79 8I5 N2 H35 SING N N 80 8I5 N23 H37 SING N N 81 8I5 N23 H38 SING N N 82 8I5 N6 H40 SING N N 83 8I5 N6 H41 SING N N 84 8I5 N7 H43 SING N N 85 8I5 N7 H44 SING N N 86 8I5 N9 H46 SING N N 87 8I5 O12 H48 SING N N 88 8I5 O14 H49 SING N N 89 8I5 O17 H50 SING N N 90 8I5 O20 H51 SING N N 91 8I5 O21 H52 SING N N 92 8I5 O3 H53 SING N N 93 8I5 O4 H54 SING N N 94 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8I5 InChI InChI 1.06 "InChI=1S/C24H48N6O13/c1-30-7-2-6(27)13(32)21(19(7)41-22-11(28)16(35)14(33)8(3-25)38-22)43-24-18(37)20(10(5-31)40-24)42-23-12(29)17(36)15(34)9(4-26)39-23/h6-24,30-37H,2-5,25-29H2,1H3/t6-,7+,8-,9+,10+,11+,12+,13+,14-,15-,16-,17-,18-,19-,20+,21-,22-,23-,24+/m1/s1" 8I5 InChIKey InChI 1.06 FCJYTWXMZQXWFB-HGRVKHENSA-N 8I5 SMILES_CANONICAL CACTVS 3.385 "CN[C@H]1C[C@@H](N)[C@H](O)[C@@H](O[C@@H]2O[C@@H](CO)[C@H](O[C@H]3O[C@@H](CN)[C@@H](O)[C@H](O)[C@@H]3N)[C@H]2O)[C@@H]1O[C@H]4O[C@H](CN)[C@@H](O)[C@H](O)[C@@H]4N" 8I5 SMILES CACTVS 3.385 "CN[CH]1C[CH](N)[CH](O)[CH](O[CH]2O[CH](CO)[CH](O[CH]3O[CH](CN)[CH](O)[CH](O)[CH]3N)[CH]2O)[CH]1O[CH]4O[CH](CN)[CH](O)[CH](O)[CH]4N" 8I5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN[C@H]1C[C@H]([C@@H]([C@H]([C@@H]1O[C@@H]2[C@H]([C@H]([C@@H]([C@H](O2)CN)O)O)N)O[C@H]3[C@@H]([C@H]([C@@H](O3)CO)O[C@@H]4[C@H]([C@H]([C@@H]([C@@H](O4)CN)O)O)N)O)O)N" 8I5 SMILES "OpenEye OEToolkits" 2.0.7 "CNC1CC(C(C(C1OC2C(C(C(C(O2)CN)O)O)N)OC3C(C(C(O3)CO)OC4C(C(C(C(O4)CN)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id 8I5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{S},6~{R})-2-(aminomethyl)-6-[(1~{R},2~{R},3~{S},4~{R},6~{S})-2-[(2~{S},3~{R},4~{R},5~{S})-4-[(2~{R},3~{S},4~{R},5~{S},6~{S})-6-(aminomethyl)-3-azanyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-5-(hydroxymethyl)-3-oxidanyl-oxolan-2-yl]oxy-4-azanyl-6-(methylamino)-3-oxidanyl-cyclohexyl]oxy-5-azanyl-oxane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8I5 "Create component" 2021-10-19 PDBE 8I5 "Modify descriptor" 2022-08-22 RCSB 8I5 "Initial release" 2022-11-02 RCSB #