data_8IZ # _chem_comp.id 8IZ _chem_comp.name "5-[(2S,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1-methyl-pyrimidine-2,4-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-17 _chem_comp.pdbx_modified_date 2022-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.228 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8IZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7W93 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8IZ C10 C1 C 0 1 N N N 74.755 -26.993 -9.482 0.819 -0.167 -0.245 C10 8IZ 1 8IZ C02 C2 C 0 1 N N R 73.107 -28.655 -8.297 -1.260 -1.147 0.771 C02 8IZ 2 8IZ C03 C3 C 0 1 N N S 73.752 -27.284 -8.364 -0.613 -0.557 -0.507 C03 8IZ 3 8IZ C05 C4 C 0 1 N N R 73.411 -27.311 -6.078 -2.782 0.252 -0.519 C05 8IZ 4 8IZ C06 C5 C 0 1 N N N 74.124 -27.472 -4.647 -3.539 1.460 0.036 C06 8IZ 5 8IZ C08 C6 C 0 1 N N S 72.794 -28.640 -6.713 -2.765 -0.881 0.525 C08 8IZ 6 8IZ C11 C7 C 0 1 N N N 74.860 -25.725 -10.189 1.124 0.872 0.667 C11 8IZ 7 8IZ C14 C8 C 0 1 N N N 76.790 -26.416 -11.391 3.399 0.553 0.242 C14 8IZ 8 8IZ C17 C9 C 0 1 N N N 77.764 -28.918 -10.838 4.218 -1.130 -1.310 C17 8IZ 9 8IZ C18 C10 C 0 1 N N N 75.714 -28.002 -9.645 1.829 -0.806 -0.874 C18 8IZ 10 8IZ N13 N1 N 0 1 N N N 75.858 -25.403 -11.189 2.412 1.203 0.886 N13 8IZ 11 8IZ N16 N2 N 0 1 N N N 76.717 -27.781 -10.590 3.123 -0.439 -0.624 N16 8IZ 12 8IZ O01 O1 O 0 1 N N N 72.009 -28.720 -9.161 -1.000 -2.549 0.875 O01 8IZ 13 8IZ O04 O2 O 0 1 N N N 74.340 -27.027 -7.113 -1.416 0.611 -0.783 O04 8IZ 14 8IZ O07 O3 O 0 1 N N N 74.611 -26.217 -4.244 -3.645 2.463 -0.976 O07 8IZ 15 8IZ O09 O4 O 0 1 N N N 71.422 -28.548 -6.551 -3.402 -2.050 0.005 O09 8IZ 16 8IZ O12 O5 O 0 1 N N N 74.041 -24.824 -10.044 0.231 1.460 1.250 O12 8IZ 17 8IZ O15 O6 O 0 1 N N N 77.684 -26.233 -12.212 4.556 0.862 0.449 O15 8IZ 18 8IZ H1 H1 H 0 1 N N N 73.849 -29.438 -8.509 -0.913 -0.623 1.661 H1 8IZ 19 8IZ H2 H2 H 0 1 N N N 72.931 -26.565 -8.498 -0.671 -1.269 -1.331 H2 8IZ 20 8IZ H3 H3 H 0 1 N N N 72.627 -26.542 -6.008 -3.260 -0.095 -1.435 H3 8IZ 21 8IZ H4 H4 H 0 1 N N N 73.396 -27.841 -3.910 -4.537 1.152 0.348 H4 8IZ 22 8IZ H5 H5 H 0 1 N N N 74.958 -28.185 -4.727 -3.000 1.864 0.893 H5 8IZ 23 8IZ H6 H6 H 0 1 N N N 73.233 -29.528 -6.235 -3.251 -0.561 1.446 H6 8IZ 24 8IZ H7 H7 H 0 1 N N N 77.537 -29.774 -10.186 5.170 -0.705 -0.993 H7 8IZ 25 8IZ H8 H8 H 0 1 N N N 77.718 -29.236 -11.890 4.192 -2.190 -1.060 H8 8IZ 26 8IZ H9 H9 H 0 1 N N N 78.773 -28.543 -10.613 4.106 -1.008 -2.387 H9 8IZ 27 8IZ H10 H10 H 0 1 N N N 75.678 -28.912 -9.064 1.615 -1.604 -1.570 H10 8IZ 28 8IZ H11 H11 H 0 1 N N N 75.875 -24.536 -11.686 2.629 1.916 1.507 H11 8IZ 29 8IZ H12 H12 H 0 1 N N N 71.615 -29.583 -9.109 -1.458 -2.980 1.609 H12 8IZ 30 8IZ H13 H13 H 0 1 N N N 75.036 -26.298 -3.398 -4.114 3.260 -0.693 H13 8IZ 31 8IZ H14 H14 H 0 1 N N N 71.212 -28.537 -5.625 -4.347 -1.939 -0.168 H14 8IZ 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8IZ O15 C14 DOUB N N 1 8IZ C14 N13 SING N N 2 8IZ C14 N16 SING N N 3 8IZ N13 C11 SING N N 4 8IZ C17 N16 SING N N 5 8IZ N16 C18 SING N N 6 8IZ C11 O12 DOUB N N 7 8IZ C11 C10 SING N N 8 8IZ C18 C10 DOUB N N 9 8IZ C10 C03 SING N N 10 8IZ O01 C02 SING N N 11 8IZ C03 C02 SING N N 12 8IZ C03 O04 SING N N 13 8IZ C02 C08 SING N N 14 8IZ O04 C05 SING N N 15 8IZ C08 O09 SING N N 16 8IZ C08 C05 SING N N 17 8IZ C05 C06 SING N N 18 8IZ C06 O07 SING N N 19 8IZ C02 H1 SING N N 20 8IZ C03 H2 SING N N 21 8IZ C05 H3 SING N N 22 8IZ C06 H4 SING N N 23 8IZ C06 H5 SING N N 24 8IZ C08 H6 SING N N 25 8IZ C17 H7 SING N N 26 8IZ C17 H8 SING N N 27 8IZ C17 H9 SING N N 28 8IZ C18 H10 SING N N 29 8IZ N13 H11 SING N N 30 8IZ O01 H12 SING N N 31 8IZ O07 H13 SING N N 32 8IZ O09 H14 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8IZ InChI InChI 1.03 "InChI=1S/C10H14N2O6/c1-12-2-4(9(16)11-10(12)17)8-7(15)6(14)5(3-13)18-8/h2,5-8,13-15H,3H2,1H3,(H,11,16,17)/t5-,6-,7-,8+/m1/s1" 8IZ InChIKey InChI 1.03 UVBYMVOUBXYSFV-XUTVFYLZSA-N 8IZ SMILES_CANONICAL CACTVS 3.385 "CN1C=C([C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O)C(=O)NC1=O" 8IZ SMILES CACTVS 3.385 "CN1C=C([CH]2O[CH](CO)[CH](O)[CH]2O)C(=O)NC1=O" 8IZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C=C(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)O" 8IZ SMILES "OpenEye OEToolkits" 2.0.7 "CN1C=C(C(=O)NC1=O)C2C(C(C(O2)CO)O)O" # _pdbx_chem_comp_identifier.comp_id 8IZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[(2~{S},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-1-methyl-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8IZ "Create component" 2021-12-17 PDBJ 8IZ "Initial release" 2022-06-22 RCSB #