data_8KH # _chem_comp.id 8KH _chem_comp.name "N-[5-[4-[[5-[[(2S)-3,3-dimethyl-1-[(2S,4R)-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-5-oxidanylidene-pentyl]carbamoyl]phenyl]-2-(4-methylpiperazin-1-yl)phenyl]-6-oxidanylidene-4-(trifluoromethyl)-1H-pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C52 H60 F3 N9 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Homer (chemical degrader probe)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-26 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1012.149 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8KH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Q2J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8KH O6 O1 O 0 1 N N N -11.646 7.269 15.245 3.542 -3.021 -0.488 O6 8KH 1 8KH C20 C1 C 0 1 N N N -12.164 8.183 14.607 3.439 -1.840 -0.220 C20 8KH 2 8KH C19 C2 C 0 1 Y N N -12.703 9.399 15.298 4.643 -0.988 -0.164 C19 8KH 3 8KH C18 C3 C 0 1 Y N N -13.604 10.264 14.686 4.526 0.369 0.150 C18 8KH 4 8KH C17 C4 C 0 1 Y N N -14.106 11.360 15.365 5.649 1.162 0.202 C17 8KH 5 8KH C48 C5 C 0 1 Y N N -12.323 9.667 16.609 5.902 -1.539 -0.418 C48 8KH 6 8KH C49 C6 C 0 1 Y N N -12.838 10.758 17.288 7.024 -0.744 -0.365 C49 8KH 7 8KH C16 C7 C 0 1 Y N N -13.744 11.626 16.685 6.905 0.612 -0.057 C16 8KH 8 8KH C15 C8 C 0 1 Y N N -14.316 12.782 17.430 8.114 1.467 -0.000 C15 8KH 9 8KH C14 C9 C 0 1 Y N N -13.867 13.084 18.714 9.370 0.918 -0.259 C14 8KH 10 8KH C6 C10 C 0 1 Y N N -14.318 14.219 19.378 10.497 1.720 -0.205 C6 8KH 11 8KH N2 N1 N 0 1 N N N -13.762 14.533 20.636 11.760 1.172 -0.465 N2 8KH 12 8KH C7 C11 C 0 1 N N N -12.432 14.700 20.876 11.978 -0.143 -0.266 C7 8KH 13 8KH O1 O2 O 0 1 N N N -11.597 14.856 19.986 11.063 -0.866 0.079 O1 8KH 14 8KH C8 C12 C 0 1 N N N -12.031 14.739 22.309 13.326 -0.705 -0.468 C8 8KH 15 8KH C12 C13 C 0 1 N N N -11.262 15.803 22.951 13.529 -2.106 -0.423 C12 8KH 16 8KH C13 C14 C 0 1 N N N -10.757 16.956 22.137 12.373 -3.039 -0.170 C13 8KH 17 8KH F2 F1 F 0 1 N N N -10.313 17.961 22.892 12.829 -4.361 -0.183 F2 8KH 18 8KH F1 F2 F 0 1 N N N -11.669 17.479 21.357 11.807 -2.752 1.077 F1 8KH 19 8KH F F3 F 0 1 N N N -9.831 16.597 21.267 11.409 -2.868 -1.170 F 8KH 20 8KH C11 C15 C 0 1 N N N -10.991 15.711 24.272 14.783 -2.597 -0.613 C11 8KH 21 8KH C10 C16 C 0 1 N N N -11.428 14.593 25.074 15.848 -1.707 -0.848 C10 8KH 22 8KH O O3 O 0 1 N N N -11.194 14.435 26.278 16.974 -2.142 -1.018 O 8KH 23 8KH N3 N2 N 0 1 N N N -12.140 13.636 24.408 15.632 -0.379 -0.886 N3 8KH 24 8KH C9 C17 C 0 1 N N N -12.430 13.690 23.084 14.399 0.129 -0.706 C9 8KH 25 8KH C50 C18 C 0 1 Y N N -15.272 13.624 16.851 7.997 2.822 0.307 C50 8KH 26 8KH C51 C19 C 0 1 Y N N -15.728 14.758 17.501 9.122 3.619 0.360 C51 8KH 27 8KH C5 C20 C 0 1 Y N N -15.243 15.077 18.765 10.374 3.075 0.108 C5 8KH 28 8KH N1 N3 N 0 1 N N N -15.598 16.292 19.405 11.510 3.885 0.163 N1 8KH 29 8KH C2 C21 C 0 1 N N N -16.953 16.527 19.907 11.424 4.980 -0.812 C2 8KH 30 8KH C1 C22 C 0 1 N N N -17.332 17.985 19.751 12.719 5.795 -0.776 C1 8KH 31 8KH C4 C23 C 0 1 N N N -14.589 17.219 19.919 11.720 4.407 1.521 C4 8KH 32 8KH C3 C24 C 0 1 N N N -15.047 18.640 19.742 13.015 5.222 1.557 C3 8KH 33 8KH N N4 N 0 1 N N N -16.338 18.848 20.383 12.928 6.318 0.581 N 8KH 34 8KH C C25 C 0 1 N N N -16.740 20.251 20.287 14.124 7.169 0.639 C 8KH 35 8KH N4 N5 N 0 1 N N N -12.268 8.139 13.277 2.224 -1.307 0.020 N4 8KH 36 8KH C21 C26 C 0 1 N N N -12.193 6.888 12.537 1.029 -2.151 -0.042 C21 8KH 37 8KH C22 C27 C 0 1 N N N -10.784 6.611 12.058 -0.209 -1.306 0.268 C22 8KH 38 8KH C23 C28 C 0 1 N N N -10.716 5.566 10.955 -1.457 -2.188 0.204 C23 8KH 39 8KH C24 C29 C 0 1 N N N -10.835 4.129 11.458 -2.695 -1.343 0.514 C24 8KH 40 8KH C25 C30 C 0 1 N N N -9.617 3.677 12.223 -3.925 -2.211 0.451 C25 8KH 41 8KH O5 O4 O 0 1 N N N -8.507 3.696 11.706 -3.822 -3.390 0.184 O5 8KH 42 8KH N5 N6 N 0 1 N N N -9.828 3.285 13.485 -5.139 -1.678 0.690 N5 8KH 43 8KH C26 C31 C 0 1 N N S -8.832 2.597 14.292 -6.335 -2.522 0.629 C26 8KH 44 8KH C27 C32 C 0 1 N N N -8.778 3.166 15.741 -6.537 -3.220 1.975 C27 8KH 45 8KH C30 C33 C 0 1 N N N -9.033 4.675 15.679 -5.349 -4.142 2.256 C30 8KH 46 8KH C29 C34 C 0 1 N N N -7.393 2.924 16.347 -6.640 -2.169 3.083 C29 8KH 47 8KH C28 C35 C 0 1 N N N -9.830 2.516 16.651 -7.825 -4.045 1.934 C28 8KH 48 8KH C31 C36 C 0 1 N N N -9.148 1.095 14.217 -7.537 -1.668 0.320 C31 8KH 49 8KH O4 O5 O 0 1 N N N -10.309 0.731 14.254 -7.612 -0.543 0.765 O4 8KH 50 8KH N6 N7 N 0 1 N N N -8.140 0.212 14.059 -8.530 -2.155 -0.452 N6 8KH 51 8KH C35 C37 C 0 1 N N S -8.410 -1.217 14.271 -9.711 -1.405 -0.902 C35 8KH 52 8KH C34 C38 C 0 1 N N N -7.068 -1.886 13.943 -10.578 -2.373 -1.735 C34 8KH 53 8KH C33 C39 C 0 1 N N R -6.382 -0.901 13.006 -10.119 -3.769 -1.235 C33 8KH 54 8KH O2 O6 O 0 1 N N N -6.889 -1.027 11.672 -10.321 -4.760 -2.244 O2 8KH 55 8KH C32 C40 C 0 1 N N N -6.765 0.444 13.597 -8.606 -3.526 -0.989 C32 8KH 56 8KH C36 C41 C 0 1 N N N -8.904 -1.600 15.666 -10.492 -0.915 0.290 C36 8KH 57 8KH O3 O7 O 0 1 N N N -8.790 -0.837 16.621 -10.105 -1.163 1.412 O3 8KH 58 8KH N7 N8 N 0 1 N N N -9.512 -2.782 15.745 -11.620 -0.200 0.109 N7 8KH 59 8KH C37 C42 C 0 1 N N N -10.124 -3.274 16.970 -12.379 0.277 1.268 C37 8KH 60 8KH C38 C43 C 0 1 Y N N -9.385 -4.464 17.520 -13.588 1.043 0.796 C38 8KH 61 8KH C41 C44 C 0 1 Y N N -8.591 -5.250 16.696 -13.497 2.407 0.578 C41 8KH 62 8KH C42 C45 C 0 1 Y N N -7.878 -6.322 17.201 -14.599 3.114 0.147 C42 8KH 63 8KH C43 C46 C 0 1 Y N N -7.943 -6.647 18.555 -15.808 2.452 -0.071 C43 8KH 64 8KH C40 C47 C 0 1 Y N N -8.739 -5.850 19.384 -15.894 1.077 0.151 C40 8KH 65 8KH C39 C48 C 0 1 Y N N -9.451 -4.782 18.867 -14.782 0.380 0.577 C39 8KH 66 8KH C44 C49 C 0 1 Y N N -7.165 -7.791 19.100 -16.994 3.205 -0.533 C44 8KH 67 8KH S S1 S 0 1 Y N N -5.650 -8.208 18.349 -17.629 4.684 0.183 S 8KH 68 8KH C47 C50 C 0 1 Y N N -5.446 -9.436 19.533 -18.881 4.722 -0.982 C47 8KH 69 8KH N8 N9 N 0 1 Y N N -6.396 -9.557 20.405 -18.778 3.716 -1.784 N8 8KH 70 8KH C45 C51 C 0 1 Y N N -7.392 -8.628 20.174 -17.781 2.884 -1.583 C45 8KH 71 8KH C46 C52 C 0 1 N N N -8.575 -8.639 21.087 -17.538 1.674 -2.448 C46 8KH 72 8KH H1 H1 H 0 1 N N N -13.915 10.078 13.669 3.554 0.795 0.350 H1 8KH 73 8KH H2 H2 H 0 1 N N N -14.793 12.024 14.862 5.559 2.211 0.444 H2 8KH 74 8KH H3 H3 H 0 1 N N N -11.617 9.016 17.103 5.994 -2.588 -0.656 H3 8KH 75 8KH H4 H4 H 0 1 N N N -12.530 10.940 18.307 7.997 -1.170 -0.561 H4 8KH 76 8KH H5 H5 H 0 1 N N N -13.160 12.428 19.200 9.463 -0.130 -0.501 H5 8KH 77 8KH H6 H6 H 0 1 N N N -14.390 14.641 21.407 12.477 1.739 -0.788 H6 8KH 78 8KH H8 H8 H 0 1 N N N -10.427 16.502 24.744 14.960 -3.662 -0.582 H8 8KH 79 8KH H9 H9 H 0 1 N N N -12.990 12.884 22.633 14.249 1.198 -0.746 H9 8KH 80 8KH H10 H10 H 0 1 N N N -15.663 13.383 15.874 7.024 3.249 0.503 H10 8KH 81 8KH H11 H11 H 0 1 N N N -16.460 15.395 17.027 9.028 4.669 0.597 H11 8KH 82 8KH H12 H12 H 0 1 N N N -17.662 15.906 19.339 11.281 4.568 -1.811 H12 8KH 83 8KH H13 H13 H 0 1 N N N -16.997 16.254 20.972 10.581 5.625 -0.562 H13 8KH 84 8KH H14 H14 H 0 1 N N N -17.394 18.229 18.680 13.558 5.157 -1.054 H14 8KH 85 8KH H15 H15 H 0 1 N N N -18.311 18.156 20.223 12.646 6.626 -1.478 H15 8KH 86 8KH H16 H16 H 0 1 N N N -14.426 17.021 20.989 10.881 5.045 1.798 H16 8KH 87 8KH H17 H17 H 0 1 N N N -13.647 17.070 19.371 11.793 3.577 2.223 H17 8KH 88 8KH H18 H18 H 0 1 N N N -14.307 19.317 20.193 13.157 5.635 2.555 H18 8KH 89 8KH H19 H19 H 0 1 N N N -15.138 18.859 18.668 13.857 4.577 1.306 H19 8KH 90 8KH H21 H21 H 0 1 N N N -17.716 20.388 20.776 14.005 8.010 -0.045 H21 8KH 91 8KH H22 H22 H 0 1 N N N -15.989 20.882 20.785 14.255 7.543 1.654 H22 8KH 92 8KH H23 H23 H 0 1 N N N -16.817 20.539 19.228 14.999 6.587 0.350 H23 8KH 93 8KH H24 H24 H 0 1 N N N -12.402 8.992 12.773 2.142 -0.364 0.234 H24 8KH 94 8KH H25 H25 H 0 1 N N N -12.862 6.947 11.666 0.936 -2.578 -1.041 H25 8KH 95 8KH H26 H26 H 0 1 N N N -12.516 6.065 13.192 1.113 -2.954 0.690 H26 8KH 96 8KH H27 H27 H 0 1 N N N -10.189 6.256 12.912 -0.116 -0.879 1.267 H27 8KH 97 8KH H28 H28 H 0 1 N N N -10.355 7.549 11.677 -0.293 -0.503 -0.464 H28 8KH 98 8KH H29 H29 H 0 1 N N N -9.752 5.673 10.435 -1.550 -2.614 -0.795 H29 8KH 99 8KH H30 H30 H 0 1 N N N -11.537 5.755 10.248 -1.373 -2.991 0.936 H30 8KH 100 8KH H31 H31 H 0 1 N N N -11.712 4.059 12.119 -2.602 -0.916 1.513 H31 8KH 101 8KH H32 H32 H 0 1 N N N -10.974 3.464 10.593 -2.779 -0.539 -0.218 H32 8KH 102 8KH H33 H33 H 0 1 N N N -10.719 3.475 13.896 -5.221 -0.735 0.904 H33 8KH 103 8KH H34 H34 H 0 1 N N N -7.842 2.753 13.839 -6.211 -3.271 -0.153 H34 8KH 104 8KH H35 H35 H 0 1 N N N -8.999 5.095 16.695 -4.431 -3.554 2.285 H35 8KH 105 8KH H36 H36 H 0 1 N N N -8.260 5.152 15.059 -5.493 -4.638 3.215 H36 8KH 106 8KH H37 H37 H 0 1 N N N -10.024 4.862 15.238 -5.276 -4.890 1.467 H37 8KH 107 8KH H38 H38 H 0 1 N N N -7.364 3.329 17.369 -7.486 -1.512 2.884 H38 8KH 108 8KH H39 H39 H 0 1 N N N -7.189 1.844 16.374 -6.784 -2.666 4.043 H39 8KH 109 8KH H40 H40 H 0 1 N N N -6.631 3.426 15.732 -5.722 -1.581 3.112 H40 8KH 110 8KH H41 H41 H 0 1 N N N -9.757 2.945 17.661 -7.709 -4.864 1.224 H41 8KH 111 8KH H42 H42 H 0 1 N N N -10.834 2.705 16.244 -8.029 -4.450 2.926 H42 8KH 112 8KH H43 H43 H 0 1 N N N -9.653 1.432 16.700 -8.654 -3.409 1.624 H43 8KH 113 8KH H44 H44 H 0 1 N N N -9.154 -1.556 13.535 -9.402 -0.559 -1.516 H44 8KH 114 8KH H45 H45 H 0 1 N N N -7.226 -2.854 13.445 -11.637 -2.219 -1.527 H45 8KH 115 8KH H46 H46 H 0 1 N N N -6.473 -2.036 14.856 -10.374 -2.255 -2.799 H46 8KH 116 8KH H47 H47 H 0 1 N N N -5.291 -1.038 13.040 -10.626 -4.045 -0.311 H47 8KH 117 8KH H48 H48 H 0 1 N N N -6.641 -1.873 11.317 -9.958 -5.628 -2.020 H48 8KH 118 8KH H49 H49 H 0 1 N N N -6.105 0.712 14.435 -8.052 -3.604 -1.924 H49 8KH 119 8KH H50 H50 H 0 1 N N N -6.731 1.237 12.835 -8.222 -4.238 -0.259 H50 8KH 120 8KH H51 H51 H 0 1 N N N -9.550 -3.356 14.927 -11.930 -0.001 -0.788 H51 8KH 121 8KH H52 H52 H 0 1 N N N -10.115 -2.470 17.721 -12.700 -0.575 1.867 H52 8KH 122 8KH H53 H53 H 0 1 N N N -11.163 -3.566 16.757 -11.748 0.929 1.872 H53 8KH 123 8KH H54 H54 H 0 1 N N N -8.529 -5.020 15.643 -12.560 2.918 0.747 H54 8KH 124 8KH H55 H55 H 0 1 N N N -7.264 -6.914 16.539 -14.527 4.179 -0.023 H55 8KH 125 8KH H56 H56 H 0 1 N N N -8.799 -6.071 20.440 -16.826 0.559 -0.015 H56 8KH 126 8KH H57 H57 H 0 1 N N N -10.068 -4.187 19.524 -14.845 -0.685 0.745 H57 8KH 127 8KH H58 H58 H 0 1 N N N -4.573 -10.072 19.549 -19.648 5.480 -1.038 H58 8KH 128 8KH H59 H59 H 0 1 N N N -8.451 -9.433 21.839 -18.125 0.836 -2.073 H59 8KH 129 8KH H60 H60 H 0 1 N N N -8.657 -7.665 21.592 -17.833 1.894 -3.473 H60 8KH 130 8KH H61 H61 H 0 1 N N N -9.488 -8.827 20.502 -16.479 1.416 -2.422 H61 8KH 131 8KH H62 H62 H 0 1 N N N -12.467 12.847 24.928 16.377 0.221 -1.049 H62 8KH 132 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8KH C23 C24 SING N N 1 8KH C23 C22 SING N N 2 8KH C24 C25 SING N N 3 8KH O2 C33 SING N N 4 8KH O5 C25 DOUB N N 5 8KH C22 C21 SING N N 6 8KH C25 N5 SING N N 7 8KH C21 N4 SING N N 8 8KH C33 C32 SING N N 9 8KH C33 C34 SING N N 10 8KH N4 C20 SING N N 11 8KH N5 C26 SING N N 12 8KH C32 N6 SING N N 13 8KH C34 C35 SING N N 14 8KH N6 C31 SING N N 15 8KH N6 C35 SING N N 16 8KH C31 O4 DOUB N N 17 8KH C31 C26 SING N N 18 8KH C35 C36 SING N N 19 8KH C26 C27 SING N N 20 8KH C20 O6 DOUB N N 21 8KH C20 C19 SING N N 22 8KH C18 C19 DOUB Y N 23 8KH C18 C17 SING Y N 24 8KH C19 C48 SING Y N 25 8KH C17 C16 DOUB Y N 26 8KH C36 N7 SING N N 27 8KH C36 O3 DOUB N N 28 8KH C30 C27 SING N N 29 8KH C27 C29 SING N N 30 8KH C27 C28 SING N N 31 8KH N7 C37 SING N N 32 8KH C48 C49 DOUB Y N 33 8KH C16 C49 SING Y N 34 8KH C16 C15 SING N N 35 8KH C41 C42 DOUB Y N 36 8KH C41 C38 SING Y N 37 8KH C50 C15 DOUB Y N 38 8KH C50 C51 SING Y N 39 8KH C37 C38 SING N N 40 8KH C42 C43 SING Y N 41 8KH C15 C14 SING Y N 42 8KH C51 C5 DOUB Y N 43 8KH C38 C39 DOUB Y N 44 8KH S C44 SING Y N 45 8KH S C47 SING Y N 46 8KH C43 C44 SING N N 47 8KH C43 C40 DOUB Y N 48 8KH C14 C6 DOUB Y N 49 8KH C5 C6 SING Y N 50 8KH C5 N1 SING N N 51 8KH C39 C40 SING Y N 52 8KH C44 C45 DOUB Y N 53 8KH C6 N2 SING N N 54 8KH N1 C2 SING N N 55 8KH N1 C4 SING N N 56 8KH C47 N8 DOUB Y N 57 8KH C3 C4 SING N N 58 8KH C3 N SING N N 59 8KH C1 C2 SING N N 60 8KH C1 N SING N N 61 8KH O1 C7 DOUB N N 62 8KH C45 N8 SING Y N 63 8KH C45 C46 SING N N 64 8KH C N SING N N 65 8KH N2 C7 SING N N 66 8KH C7 C8 SING N N 67 8KH F C13 SING N N 68 8KH F1 C13 SING N N 69 8KH C13 F2 SING N N 70 8KH C13 C12 SING N N 71 8KH C8 C12 SING N N 72 8KH C8 C9 DOUB N N 73 8KH C12 C11 DOUB N N 74 8KH C9 N3 SING N N 75 8KH C11 C10 SING N N 76 8KH N3 C10 SING N N 77 8KH C10 O DOUB N N 78 8KH C18 H1 SING N N 79 8KH C17 H2 SING N N 80 8KH C48 H3 SING N N 81 8KH C49 H4 SING N N 82 8KH C14 H5 SING N N 83 8KH N2 H6 SING N N 84 8KH C11 H8 SING N N 85 8KH C9 H9 SING N N 86 8KH C50 H10 SING N N 87 8KH C51 H11 SING N N 88 8KH C2 H12 SING N N 89 8KH C2 H13 SING N N 90 8KH C1 H14 SING N N 91 8KH C1 H15 SING N N 92 8KH C4 H16 SING N N 93 8KH C4 H17 SING N N 94 8KH C3 H18 SING N N 95 8KH C3 H19 SING N N 96 8KH C H21 SING N N 97 8KH C H22 SING N N 98 8KH C H23 SING N N 99 8KH N4 H24 SING N N 100 8KH C21 H25 SING N N 101 8KH C21 H26 SING N N 102 8KH C22 H27 SING N N 103 8KH C22 H28 SING N N 104 8KH C23 H29 SING N N 105 8KH C23 H30 SING N N 106 8KH C24 H31 SING N N 107 8KH C24 H32 SING N N 108 8KH N5 H33 SING N N 109 8KH C26 H34 SING N N 110 8KH C30 H35 SING N N 111 8KH C30 H36 SING N N 112 8KH C30 H37 SING N N 113 8KH C29 H38 SING N N 114 8KH C29 H39 SING N N 115 8KH C29 H40 SING N N 116 8KH C28 H41 SING N N 117 8KH C28 H42 SING N N 118 8KH C28 H43 SING N N 119 8KH C35 H44 SING N N 120 8KH C34 H45 SING N N 121 8KH C34 H46 SING N N 122 8KH C33 H47 SING N N 123 8KH O2 H48 SING N N 124 8KH C32 H49 SING N N 125 8KH C32 H50 SING N N 126 8KH N7 H51 SING N N 127 8KH C37 H52 SING N N 128 8KH C37 H53 SING N N 129 8KH C41 H54 SING N N 130 8KH C42 H55 SING N N 131 8KH C40 H56 SING N N 132 8KH C39 H57 SING N N 133 8KH C47 H58 SING N N 134 8KH C46 H59 SING N N 135 8KH C46 H60 SING N N 136 8KH C46 H61 SING N N 137 8KH N3 H62 SING N N 138 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8KH InChI InChI 1.06 "InChI=1S/C52H60F3N9O7S/c1-31-45(72-30-59-31)34-11-9-32(10-12-34)27-58-49(70)42-25-37(65)29-64(42)50(71)46(51(2,3)4)61-43(66)8-6-7-19-56-47(68)35-15-13-33(14-16-35)36-17-18-41(63-22-20-62(5)21-23-63)40(24-36)60-48(69)38-28-57-44(67)26-39(38)52(53,54)55/h9-18,24,26,28,30,37,42,46,65H,6-8,19-23,25,27,29H2,1-5H3,(H,56,68)(H,57,67)(H,58,70)(H,60,69)(H,61,66)/t37-,42+,46-/m1/s1" 8KH InChIKey InChI 1.06 OFNZESNEBSQKSE-BQGOKDIQSA-N 8KH SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)c2ccc(cc2NC(=O)C3=CNC(=O)C=C3C(F)(F)F)c4ccc(cc4)C(=O)NCCCCC(=O)N[C@H](C(=O)N5C[C@H](O)C[C@H]5C(=O)NCc6ccc(cc6)c7scnc7C)C(C)(C)C" 8KH SMILES CACTVS 3.385 "CN1CCN(CC1)c2ccc(cc2NC(=O)C3=CNC(=O)C=C3C(F)(F)F)c4ccc(cc4)C(=O)NCCCCC(=O)N[CH](C(=O)N5C[CH](O)C[CH]5C(=O)NCc6ccc(cc6)c7scnc7C)C(C)(C)C" 8KH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)CNC(=O)[C@@H]3C[C@H](CN3C(=O)[C@H](C(C)(C)C)NC(=O)CCCCNC(=O)c4ccc(cc4)c5ccc(c(c5)NC(=O)C6=CNC(=O)C=C6C(F)(F)F)N7CCN(CC7)C)O" 8KH SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(scn1)c2ccc(cc2)CNC(=O)C3CC(CN3C(=O)C(C(C)(C)C)NC(=O)CCCCNC(=O)c4ccc(cc4)c5ccc(c(c5)NC(=O)C6=CNC(=O)C=C6C(F)(F)F)N7CCN(CC7)C)O" # _pdbx_chem_comp_identifier.comp_id 8KH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[5-[4-[[5-[[(2~{S})-3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]amino]-5-oxidanylidene-pentyl]carbamoyl]phenyl]-2-(4-methylpiperazin-1-yl)phenyl]-6-oxidanylidene-4-(trifluoromethyl)-1~{H}-pyridine-3-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8KH _pdbx_chem_comp_synonyms.name "Homer (chemical degrader probe)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8KH "Create component" 2021-10-26 PDBE 8KH "Modify coordinates" 2021-11-05 PDBE 8KH "Initial release" 2021-11-24 RCSB 8KH "Modify descriptor" 2022-08-22 RCSB #