data_8LS # _chem_comp.id 8LS _chem_comp.name "6-benzyl-3-[(2R)-2-(3-fluoropyridin-2-yl)-6-methyl-3,4-dihydro-2H-1-benzopyran-7-yl]-4,6-dihydropyrido[4,3-d]pyrimidine-2,7(3H,8H)-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H25 F N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-02-15 _chem_comp.pdbx_modified_date 2017-07-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.532 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8LS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5URJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8LS C4 C1 C 0 1 Y N N -88.780 -15.351 162.170 -3.485 1.829 -1.016 C4 8LS 1 8LS C5 C2 C 0 1 N N N -87.633 -15.960 162.930 -4.923 1.914 -1.461 C5 8LS 2 8LS C6 C3 C 0 1 N N N -87.397 -17.378 162.372 -5.789 1.011 -0.579 C6 8LS 3 8LS C7 C4 C 0 1 N N R -88.719 -18.117 162.590 -5.112 -0.362 -0.485 C7 8LS 4 8LS C10 C5 C 0 1 Y N N -90.751 -15.665 160.881 -1.700 0.736 0.158 C10 8LS 5 8LS N12 N1 N 0 1 N N N -92.013 -13.996 159.963 0.522 1.678 0.140 N12 8LS 6 8LS C13 C6 C 0 1 N N N -93.371 -14.271 160.461 1.522 0.979 -0.689 C13 8LS 7 8LS C15 C7 C 0 1 N N N -95.750 -14.445 159.761 3.941 0.390 -0.832 C15 8LS 8 8LS C17 C8 C 0 1 N N N -98.105 -14.741 159.161 6.234 -0.320 -1.224 C17 8LS 9 8LS C20 C9 C 0 1 Y N N -99.675 -17.983 157.983 7.308 -3.450 0.593 C20 8LS 10 8LS C21 C10 C 0 1 Y N N -98.642 -18.882 158.155 6.501 -4.404 0.001 C21 8LS 11 8LS C22 C11 C 0 1 Y N N -97.430 -18.448 158.643 5.609 -4.036 -0.988 C22 8LS 12 8LS C24 C12 C 0 1 N N N -96.484 -13.841 157.594 5.632 0.965 0.736 C24 8LS 13 8LS C26 C13 C 0 1 N N N -95.179 -13.467 157.239 4.593 1.679 1.579 C26 8LS 14 8LS C1 C14 C 0 1 N N N -90.116 -11.937 161.164 -0.331 3.863 -1.473 C1 8LS 15 8LS C2 C15 C 0 1 Y N N -89.973 -13.432 161.313 -1.280 2.778 -1.033 C2 8LS 16 8LS C3 C16 C 0 1 Y N N -88.914 -13.972 162.035 -2.605 2.822 -1.416 C3 8LS 17 8LS O8 O1 O 0 1 N N N -89.646 -17.546 161.675 -3.866 -0.204 0.195 O8 8LS 18 8LS C9 C17 C 0 1 Y N N -89.704 -16.194 161.592 -3.034 0.784 -0.228 C9 8LS 19 8LS C11 C18 C 0 1 Y N N -90.904 -14.305 160.746 -0.821 1.727 -0.249 C11 8LS 20 8LS C14 C19 C 0 1 N N N -94.486 -14.112 159.454 2.944 0.992 -0.166 C14 8LS 21 8LS N16 N2 N 0 1 N N N -96.741 -14.322 158.830 5.235 0.371 -0.406 N16 8LS 22 8LS C18 C20 C 0 1 Y N N -98.292 -16.205 158.802 6.328 -1.761 -0.792 C18 8LS 23 8LS C19 C21 C 0 1 Y N N -99.502 -16.652 158.306 7.222 -2.129 0.197 C19 8LS 24 8LS C23 C22 C 0 1 Y N N -97.265 -17.115 158.962 5.522 -2.715 -1.385 C23 8LS 25 8LS O25 O2 O 0 1 N N N -97.394 -13.744 156.779 6.794 0.930 1.082 O25 8LS 26 8LS C27 C23 C 0 1 N N N -94.163 -13.599 158.171 3.174 1.663 1.050 C27 8LS 27 8LS N28 N3 N 0 1 N N N -92.849 -13.288 157.861 2.199 2.247 1.696 N28 8LS 28 8LS C29 C24 C 0 1 N N N -91.836 -13.539 158.703 0.930 2.261 1.283 C29 8LS 29 8LS O30 O3 O 0 1 N N N -90.704 -13.314 158.320 0.104 2.838 1.968 O30 8LS 30 8LS C31 C25 C 0 1 Y N N -88.675 -19.608 162.368 -5.994 -1.311 0.285 C31 8LS 31 8LS N32 N4 N 0 1 Y N N -88.077 -20.132 161.319 -6.089 -1.195 1.596 N32 8LS 32 8LS C33 C26 C 0 1 Y N N -88.056 -21.439 161.111 -6.848 -2.002 2.310 C33 8LS 33 8LS C34 C27 C 0 1 Y N N -88.665 -22.316 161.985 -7.579 -3.008 1.706 C34 8LS 34 8LS C35 C28 C 0 1 Y N N -89.311 -21.802 163.096 -7.506 -3.162 0.330 C35 8LS 35 8LS C36 C29 C 0 1 Y N N -89.317 -20.425 163.279 -6.700 -2.291 -0.391 C36 8LS 36 8LS F37 F1 F 0 1 N N N -89.940 -19.883 164.349 -6.603 -2.401 -1.734 F37 8LS 37 8LS H1 H1 H 0 1 N N N -86.728 -15.349 162.794 -5.269 2.944 -1.375 H1 8LS 38 8LS H2 H2 H 0 1 N N N -87.881 -16.016 164.000 -5.002 1.590 -2.499 H2 8LS 39 8LS H3 H3 H 0 1 N N N -86.582 -17.877 162.916 -5.879 1.446 0.416 H3 8LS 40 8LS H4 H4 H 0 1 N N N -87.150 -17.335 161.301 -6.779 0.903 -1.024 H4 8LS 41 8LS H5 H5 H 0 1 N N N -89.053 -17.928 163.621 -4.937 -0.755 -1.486 H5 8LS 42 8LS H6 H6 H 0 1 N N N -91.468 -16.328 160.419 -1.347 -0.076 0.777 H6 8LS 43 8LS H7 H7 H 0 1 N N N -93.570 -13.583 161.296 1.209 -0.059 -0.797 H7 8LS 44 8LS H8 H8 H 0 1 N N N -93.392 -15.308 160.827 1.523 1.437 -1.679 H8 8LS 45 8LS H9 H9 H 0 1 N N N -95.984 -14.812 160.749 3.704 -0.109 -1.760 H9 8LS 46 8LS H10 H10 H 0 1 N N N -98.823 -14.131 158.593 5.941 -0.274 -2.273 H10 8LS 47 8LS H11 H11 H 0 1 N N N -98.278 -14.604 160.239 7.204 0.161 -1.097 H11 8LS 48 8LS H12 H12 H 0 1 N N N -100.623 -18.323 157.594 8.002 -3.737 1.369 H12 8LS 49 8LS H13 H13 H 0 1 N N N -98.784 -19.924 157.907 6.569 -5.436 0.310 H13 8LS 50 8LS H14 H14 H 0 1 N N N -96.615 -19.144 158.775 4.979 -4.781 -1.452 H14 8LS 51 8LS H15 H15 H 0 1 N N N -94.896 -14.074 156.367 4.592 1.227 2.570 H15 8LS 52 8LS H16 H16 H 0 1 N N N -95.215 -12.406 156.951 4.901 2.719 1.687 H16 8LS 53 8LS H17 H17 H 0 1 N N N -90.718 -11.541 161.995 -0.328 4.665 -0.735 H17 8LS 54 8LS H18 H18 H 0 1 N N N -89.120 -11.470 161.178 0.674 3.450 -1.566 H18 8LS 55 8LS H19 H19 H 0 1 N N N -90.614 -11.710 160.210 -0.652 4.257 -2.437 H19 8LS 56 8LS H20 H20 H 0 1 N N N -88.190 -13.316 162.495 -2.958 3.636 -2.032 H20 8LS 57 8LS H21 H21 H 0 1 N N N -100.317 -15.956 158.170 7.852 -1.384 0.660 H21 8LS 58 8LS H22 H22 H 0 1 N N N -96.313 -16.777 159.345 4.825 -2.427 -2.158 H22 8LS 59 8LS H23 H23 H 0 1 N N N -87.551 -21.827 160.239 -6.900 -1.876 3.382 H23 8LS 60 8LS H24 H24 H 0 1 N N N -88.638 -23.381 161.806 -8.198 -3.665 2.297 H24 8LS 61 8LS H25 H25 H 0 1 N N N -89.799 -22.456 163.804 -8.066 -3.939 -0.169 H25 8LS 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8LS O25 C24 DOUB N N 1 8LS C26 C24 SING N N 2 8LS C26 C27 SING N N 3 8LS C24 N16 SING N N 4 8LS N28 C27 DOUB N N 5 8LS N28 C29 SING N N 6 8LS C20 C21 DOUB Y N 7 8LS C20 C19 SING Y N 8 8LS C21 C22 SING Y N 9 8LS C27 C14 SING N N 10 8LS C19 C18 DOUB Y N 11 8LS O30 C29 DOUB N N 12 8LS C22 C23 DOUB Y N 13 8LS C29 N12 SING N N 14 8LS C18 C23 SING Y N 15 8LS C18 C17 SING N N 16 8LS N16 C17 SING N N 17 8LS N16 C15 SING N N 18 8LS C14 C15 DOUB N N 19 8LS C14 C13 SING N N 20 8LS N12 C13 SING N N 21 8LS N12 C11 SING N N 22 8LS C11 C10 DOUB Y N 23 8LS C11 C2 SING Y N 24 8LS C10 C9 SING Y N 25 8LS C33 N32 DOUB Y N 26 8LS C33 C34 SING Y N 27 8LS C1 C2 SING N N 28 8LS C2 C3 DOUB Y N 29 8LS N32 C31 SING Y N 30 8LS C9 O8 SING N N 31 8LS C9 C4 DOUB Y N 32 8LS O8 C7 SING N N 33 8LS C34 C35 DOUB Y N 34 8LS C3 C4 SING Y N 35 8LS C4 C5 SING N N 36 8LS C31 C7 SING N N 37 8LS C31 C36 DOUB Y N 38 8LS C6 C7 SING N N 39 8LS C6 C5 SING N N 40 8LS C35 C36 SING Y N 41 8LS C36 F37 SING N N 42 8LS C5 H1 SING N N 43 8LS C5 H2 SING N N 44 8LS C6 H3 SING N N 45 8LS C6 H4 SING N N 46 8LS C7 H5 SING N N 47 8LS C10 H6 SING N N 48 8LS C13 H7 SING N N 49 8LS C13 H8 SING N N 50 8LS C15 H9 SING N N 51 8LS C17 H10 SING N N 52 8LS C17 H11 SING N N 53 8LS C20 H12 SING N N 54 8LS C21 H13 SING N N 55 8LS C22 H14 SING N N 56 8LS C26 H15 SING N N 57 8LS C26 H16 SING N N 58 8LS C1 H17 SING N N 59 8LS C1 H18 SING N N 60 8LS C1 H19 SING N N 61 8LS C3 H20 SING N N 62 8LS C19 H21 SING N N 63 8LS C23 H22 SING N N 64 8LS C33 H23 SING N N 65 8LS C34 H24 SING N N 66 8LS C35 H25 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8LS SMILES ACDLabs 12.01 "c51CCC(Oc1cc(N4CC3=CN(Cc2ccccc2)C(CC3=NC4=O)=O)c(C)c5)c6c(cccn6)F" 8LS InChI InChI 1.03 "InChI=1S/C29H25FN4O3/c1-18-12-20-9-10-25(28-22(30)8-5-11-31-28)37-26(20)14-24(18)34-17-21-16-33(15-19-6-3-2-4-7-19)27(35)13-23(21)32-29(34)36/h2-8,11-12,14,16,25H,9-10,13,15,17H2,1H3/t25-/m1/s1" 8LS InChIKey InChI 1.03 IHLUBSALJUDYDX-RUZDIDTESA-N 8LS SMILES_CANONICAL CACTVS 3.385 "Cc1cc2CC[C@@H](Oc2cc1N3CC4=CN(Cc5ccccc5)C(=O)CC4=NC3=O)c6ncccc6F" 8LS SMILES CACTVS 3.385 "Cc1cc2CC[CH](Oc2cc1N3CC4=CN(Cc5ccccc5)C(=O)CC4=NC3=O)c6ncccc6F" 8LS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1N3CC4=CN(C(=O)CC4=NC3=O)Cc5ccccc5)O[C@H](CC2)c6c(cccn6)F" 8LS SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1N3CC4=CN(C(=O)CC4=NC3=O)Cc5ccccc5)OC(CC2)c6c(cccn6)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8LS "SYSTEMATIC NAME" ACDLabs 12.01 "6-benzyl-3-[(2R)-2-(3-fluoropyridin-2-yl)-6-methyl-3,4-dihydro-2H-1-benzopyran-7-yl]-4,6-dihydropyrido[4,3-d]pyrimidine-2,7(3H,8H)-dione" 8LS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[(2~{R})-2-(3-fluoranylpyridin-2-yl)-6-methyl-3,4-dihydro-2~{H}-chromen-7-yl]-6-(phenylmethyl)-4,8-dihydropyrido[4,3-d]pyrimidine-2,7-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8LS "Create component" 2017-02-15 RCSB 8LS "Initial release" 2017-07-19 RCSB #