data_8LX # _chem_comp.id 8LX _chem_comp.name "(5S)-5-[[4-[2-[[6-(4-methoxyphenoxy)pyrimidin-4-yl]-methyl-amino]ethoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H24 N4 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Lobeglitazone _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-08-03 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 480.536 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8LX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5Y2T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8LX CAE C1 C 0 1 N N S 9.764 1.622 53.275 6.158 -0.434 0.187 CAE 8LX 1 8LX CAF C2 C 0 1 N N N 10.451 0.269 53.606 5.171 -0.248 1.341 CAF 8LX 2 8LX CAG C3 C 0 1 Y N N 10.418 -0.666 52.545 3.937 0.457 0.838 CAG 8LX 3 8LX CAH C4 C 0 1 N N N 9.684 2.431 54.440 7.457 -1.029 0.684 CAH 8LX 4 8LX CAI C5 C 0 1 Y N N 11.566 -0.871 51.791 2.872 -0.278 0.351 CAI 8LX 5 8LX CAJ C6 C 0 1 Y N N 9.266 -1.395 52.250 3.870 1.838 0.870 CAJ 8LX 6 8LX CAK C7 C 0 1 N N N 9.382 -4.409 47.541 -0.765 4.347 -1.029 CAK 8LX 7 8LX CAL C8 C 0 1 Y N N 10.426 -2.487 50.435 1.673 1.751 -0.084 CAL 8LX 8 8LX CAM C9 C 0 1 N N N 9.208 -3.708 48.904 0.561 3.814 -0.480 CAM 8LX 9 8LX CAN C10 C 0 1 Y N N 11.570 -1.785 50.753 1.740 0.366 -0.110 CAN 8LX 10 8LX CAO C11 C 0 1 Y N N 9.269 -2.311 51.197 2.740 2.486 0.411 CAO 8LX 11 8LX CAP C12 C 0 1 N N N 10.984 3.866 53.282 6.929 -2.782 -0.734 CAP 8LX 12 8LX CAR C13 C 0 1 N N N 11.170 -3.196 46.154 -2.269 4.770 0.970 CAR 8LX 13 8LX CAV C14 C 0 1 Y N N 7.394 -0.347 42.047 -5.814 -0.497 0.578 CAV 8LX 14 8LX CAW C15 C 0 1 Y N N 6.812 0.904 41.853 -5.097 -1.612 0.988 CAW 8LX 15 8LX CAX C16 C 0 1 Y N N 7.015 -1.420 41.249 -7.035 -0.655 -0.061 CAX 8LX 16 8LX CAY C17 C 0 1 Y N N 5.421 -0.002 40.118 -6.816 -3.036 0.114 CAY 8LX 17 8LX CAZ C18 C 0 1 Y N N 5.820 1.081 40.898 -5.597 -2.878 0.757 CAZ 8LX 18 8LX NAA N1 N 0 1 N N N 9.756 -3.427 46.494 -1.861 3.924 -0.154 NAA 8LX 19 8LX NAB N2 N 0 1 N N N 10.353 3.601 54.436 7.742 -2.207 0.155 NAB 8LX 20 8LX CBA C19 C 0 1 Y N N 6.022 -1.248 40.289 -7.535 -1.921 -0.292 CBA 8LX 21 8LX CBB C20 C 0 1 N N N 4.133 -1.061 38.509 -6.514 -5.385 0.330 CBB 8LX 22 8LX OBC O1 O 0 1 N N N 10.487 -3.370 49.399 0.560 2.386 -0.537 OBC 8LX 23 8LX OBD O2 O 0 1 N N N 9.085 2.076 55.459 8.171 -0.477 1.494 OBD 8LX 24 8LX OBE O3 O 0 1 N N N 11.644 4.882 53.074 7.102 -3.856 -1.275 OBE 8LX 25 8LX OBF O4 O 0 1 N N N 8.398 -0.509 42.963 -5.322 0.750 0.806 OBF 8LX 26 8LX OBG O5 O 0 1 N N N 4.447 0.172 39.174 -7.308 -4.283 -0.115 OBG 8LX 27 8LX SBH S1 S 0 1 N N N 10.731 2.648 52.146 5.551 -1.695 -0.984 SBH 8LX 28 8LX N1 N3 N 0 1 Y N N 7.558 -2.822 46.253 -2.087 1.900 -1.346 N1 8LX 29 8LX C2 C21 C 0 1 Y N N 6.529 -2.140 45.606 -2.701 0.757 -1.576 C2 8LX 30 8LX N3 N4 N 0 1 Y N N 6.843 -1.351 44.486 -3.753 0.380 -0.878 N3 8LX 31 8LX C4 C22 C 0 1 Y N N 8.107 -1.280 44.054 -4.239 1.147 0.094 C4 8LX 32 8LX C5 C23 C 0 1 Y N N 9.134 -1.953 44.706 -3.621 2.360 0.370 C5 8LX 33 8LX C6 C24 C 0 1 Y N N 8.824 -2.740 45.830 -2.512 2.724 -0.390 C6 8LX 34 8LX H1 H1 H 0 1 N N N 8.781 1.453 52.811 6.337 0.513 -0.322 H1 8LX 35 8LX H2 H2 H 0 1 N N N 9.942 -0.175 54.474 4.894 -1.222 1.743 H2 8LX 36 8LX H3 H3 H 0 1 N N N 11.503 0.468 53.860 5.637 0.350 2.125 H3 8LX 37 8LX H4 H4 H 0 1 N N N 12.462 -0.313 52.017 2.926 -1.357 0.331 H4 8LX 38 8LX H5 H5 H 0 1 N N N 8.371 -1.251 52.837 4.701 2.409 1.255 H5 8LX 39 8LX H6 H6 H 0 1 N N N 8.435 -4.894 47.260 -0.730 5.436 -1.069 H6 8LX 40 8LX H7 H7 H 0 1 N N N 10.173 -5.169 47.623 -0.927 3.952 -2.032 H7 8LX 41 8LX H8 H8 H 0 1 N N N 8.606 -2.796 48.778 1.384 4.202 -1.080 H8 8LX 42 8LX H9 H9 H 0 1 N N N 8.704 -4.386 49.609 0.681 4.137 0.554 H9 8LX 43 8LX H10 H10 H 0 1 N N N 12.475 -1.950 50.187 0.911 -0.209 -0.495 H10 8LX 44 8LX H11 H11 H 0 1 N N N 8.380 -2.882 50.972 2.690 3.565 0.433 H11 8LX 45 8LX H12 H12 H 0 1 N N N 11.808 -3.833 46.785 -3.042 5.464 0.641 H12 8LX 46 8LX H13 H13 H 0 1 N N N 11.338 -3.443 45.095 -2.660 4.145 1.773 H13 8LX 47 8LX H14 H14 H 0 1 N N N 11.421 -2.139 46.328 -1.408 5.331 1.333 H14 8LX 48 8LX H15 H15 H 0 1 N N N 7.135 1.743 42.451 -4.148 -1.489 1.489 H15 8LX 49 8LX H16 H16 H 0 1 N N N 7.489 -2.383 41.373 -7.596 0.213 -0.377 H16 8LX 50 8LX H17 H17 H 0 1 N N N 5.362 2.049 40.761 -5.037 -3.746 1.073 H17 8LX 51 8LX H18 H18 H 0 1 N N N 10.377 4.217 55.223 8.557 -2.662 0.417 H18 8LX 52 8LX H19 H19 H 0 1 N N N 5.716 -2.082 39.675 -8.484 -2.044 -0.793 H19 8LX 53 8LX H20 H20 H 0 1 N N N 3.348 -0.884 37.759 -7.020 -6.319 0.087 H20 8LX 54 8LX H21 H21 H 0 1 N N N 5.034 -1.449 38.012 -5.544 -5.357 -0.166 H21 8LX 55 8LX H22 H22 H 0 1 N N N 3.776 -1.795 39.247 -6.373 -5.319 1.409 H22 8LX 56 8LX H23 H23 H 0 1 N N N 5.511 -2.216 45.958 -2.331 0.112 -2.358 H23 8LX 57 8LX H24 H24 H 0 1 N N N 10.152 -1.873 44.356 -3.992 3.006 1.153 H24 8LX 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8LX CBB OBG SING N N 1 8LX OBG CAY SING N N 2 8LX CAY CBA DOUB Y N 3 8LX CAY CAZ SING Y N 4 8LX CBA CAX SING Y N 5 8LX CAZ CAW DOUB Y N 6 8LX CAX CAV DOUB Y N 7 8LX CAW CAV SING Y N 8 8LX CAV OBF SING N N 9 8LX OBF C4 SING N N 10 8LX C4 N3 DOUB Y N 11 8LX C4 C5 SING Y N 12 8LX N3 C2 SING Y N 13 8LX C5 C6 DOUB Y N 14 8LX C2 N1 DOUB Y N 15 8LX C6 N1 SING Y N 16 8LX C6 NAA SING N N 17 8LX CAR NAA SING N N 18 8LX NAA CAK SING N N 19 8LX CAK CAM SING N N 20 8LX CAM OBC SING N N 21 8LX OBC CAL SING N N 22 8LX CAL CAN DOUB Y N 23 8LX CAL CAO SING Y N 24 8LX CAN CAI SING Y N 25 8LX CAO CAJ DOUB Y N 26 8LX CAI CAG DOUB Y N 27 8LX SBH CAE SING N N 28 8LX SBH CAP SING N N 29 8LX CAJ CAG SING Y N 30 8LX CAG CAF SING N N 31 8LX OBE CAP DOUB N N 32 8LX CAE CAF SING N N 33 8LX CAE CAH SING N N 34 8LX CAP NAB SING N N 35 8LX NAB CAH SING N N 36 8LX CAH OBD DOUB N N 37 8LX CAE H1 SING N N 38 8LX CAF H2 SING N N 39 8LX CAF H3 SING N N 40 8LX CAI H4 SING N N 41 8LX CAJ H5 SING N N 42 8LX CAK H6 SING N N 43 8LX CAK H7 SING N N 44 8LX CAM H8 SING N N 45 8LX CAM H9 SING N N 46 8LX CAN H10 SING N N 47 8LX CAO H11 SING N N 48 8LX CAR H12 SING N N 49 8LX CAR H13 SING N N 50 8LX CAR H14 SING N N 51 8LX CAW H15 SING N N 52 8LX CAX H16 SING N N 53 8LX CAZ H17 SING N N 54 8LX NAB H18 SING N N 55 8LX CBA H19 SING N N 56 8LX CBB H20 SING N N 57 8LX CBB H21 SING N N 58 8LX CBB H22 SING N N 59 8LX C2 H23 SING N N 60 8LX C5 H24 SING N N 61 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8LX InChI InChI 1.03 "InChI=1S/C24H24N4O5S/c1-28(21-14-22(26-15-25-21)33-19-9-7-17(31-2)8-10-19)11-12-32-18-5-3-16(4-6-18)13-20-23(29)27-24(30)34-20/h3-10,14-15,20H,11-13H2,1-2H3,(H,27,29,30)/t20-/m0/s1" 8LX InChIKey InChI 1.03 CHHXEZSCHQVSRE-FQEVSTJZSA-N 8LX SMILES_CANONICAL CACTVS 3.385 "COc1ccc(Oc2cc(ncn2)N(C)CCOc3ccc(C[C@@H]4SC(=O)NC4=O)cc3)cc1" 8LX SMILES CACTVS 3.385 "COc1ccc(Oc2cc(ncn2)N(C)CCOc3ccc(C[CH]4SC(=O)NC4=O)cc3)cc1" 8LX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN(CCOc1ccc(cc1)C[C@H]2C(=O)NC(=O)S2)c3cc(ncn3)Oc4ccc(cc4)OC" 8LX SMILES "OpenEye OEToolkits" 2.0.6 "CN(CCOc1ccc(cc1)CC2C(=O)NC(=O)S2)c3cc(ncn3)Oc4ccc(cc4)OC" # _pdbx_chem_comp_identifier.comp_id 8LX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(5~{S})-5-[[4-[2-[[6-(4-methoxyphenoxy)pyrimidin-4-yl]-methyl-amino]ethoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8LX "Create component" 2017-08-03 PDBJ 8LX "Initial release" 2017-12-20 RCSB 8LX "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8LX _pdbx_chem_comp_synonyms.name Lobeglitazone _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##