data_8MG # _chem_comp.id 8MG _chem_comp.name "8-METHYL-2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-10-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.248 _chem_comp.one_letter_code G _chem_comp.three_letter_code 8MG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1R4D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8MG P P P 0 1 N N N 57.403 40.169 -22.009 1.592 -1.245 -4.964 P 8MG 1 8MG OP3 O3P O 0 1 N Y N 56.374 39.226 -22.521 0.339 -0.227 -4.868 OP3 8MG 2 8MG OP2 O2P O 0 1 N N N 57.058 41.098 -20.903 0.886 -2.697 -5.051 OP2 8MG 3 8MG "O5'" O5* O 0 1 N N N 57.938 41.035 -23.236 2.211 -1.232 -3.468 "O5'" 8MG 4 8MG N9 N9 N 0 1 Y N N 62.115 41.092 -24.302 1.818 1.923 -0.049 N9 8MG 5 8MG C4 C4 C 0 1 Y N N 62.425 39.848 -23.806 1.989 2.586 -1.232 C4 8MG 6 8MG N3 N3 N 0 1 N N N 61.871 38.678 -24.191 2.455 2.050 -2.381 N3 8MG 7 8MG C2 C2 C 0 1 N N N 62.380 37.651 -23.532 2.516 2.919 -3.367 C2 8MG 8 8MG N2 N2 N 0 1 N N N 61.938 36.416 -23.790 2.962 2.572 -4.616 N2 8MG 9 8MG N1 N1 N 0 1 N N N 63.355 37.760 -22.574 2.128 4.272 -3.217 N1 8MG 10 8MG C6 C6 C 0 1 N N N 63.939 38.953 -22.161 1.642 4.847 -2.035 C6 8MG 11 8MG O6 O6 O 0 1 N N N 64.812 38.939 -21.285 1.305 6.017 -1.902 O6 8MG 12 8MG C5 C5 C 0 1 Y N N 63.402 40.066 -22.859 1.587 3.875 -0.978 C5 8MG 13 8MG N7 N7 N 0 1 Y N N 63.698 41.418 -22.759 1.175 4.040 0.311 N7 8MG 14 8MG C8 C8 C 0 1 Y N N 62.910 41.987 -23.631 1.326 2.845 0.847 C8 8MG 15 8MG "C2'" C2* C 0 1 N N N 60.935 40.312 -26.381 0.878 -0.312 0.578 "C2'" 8MG 16 8MG "C5'" C5* C 0 1 N N N 57.672 40.647 -24.586 1.348 -1.500 -2.377 "C5'" 8MG 17 8MG "C4'" C4* C 0 1 N N R 58.836 41.012 -25.478 2.156 -1.432 -1.088 "C4'" 8MG 18 8MG "O4'" O4* O 0 1 N N N 59.885 41.622 -24.698 2.678 -0.093 -0.958 "O4'" 8MG 19 8MG "C1'" C1* C 0 1 N N R 61.134 41.408 -25.338 2.101 0.516 0.211 "C1'" 8MG 20 8MG "C3'" C3* C 0 1 N N S 59.507 39.833 -26.173 1.309 -1.697 0.152 "C3'" 8MG 21 8MG "O3'" O3* O 0 1 N N N 58.871 39.575 -27.427 2.127 -2.250 1.180 "O3'" 8MG 22 8MG C C C 0 1 N N N 62.703 43.309 -23.621 1.018 2.481 2.247 C 8MG 23 8MG OP1 O1P O 0 1 N N N ? ? ? 2.575 -0.951 -6.059 OP1 8MG 24 8MG H3P H3P H 0 1 N N N 56.594 38.631 -23.228 -0.163 -0.014 -5.684 H3P 8MG 25 8MG H2P H2P H 0 1 N N N 57.715 41.700 -20.575 0.508 -2.990 -5.907 H2P 8MG 26 8MG H21 1H2 H 0 1 N N N 61.219 36.279 -24.486 3.584 3.192 -5.082 H21 8MG 27 8MG H22 2H2 H 0 1 N N N 62.316 35.626 -23.284 2.647 1.715 -5.007 H22 8MG 28 8MG H1 H1 H 0 1 N N N 63.680 36.914 -22.131 2.207 4.874 -4.031 H1 8MG 29 8MG "H2'" 1H2* H 0 1 N N N 61.644 39.497 -26.262 0.008 0.008 -0.009 "H2'" 8MG 30 8MG "H2''" 2H2* H 0 0 N N N 61.072 40.726 -27.380 0.635 -0.225 1.641 "H2''" 8MG 31 8MG "H5'" 1H5* H 0 1 N N N 56.777 41.157 -24.942 0.551 -0.756 -2.359 "H5'" 8MG 32 8MG "H5''" 2H5* H 0 0 N N N 57.512 39.570 -24.633 0.917 -2.495 -2.497 "H5''" 8MG 33 8MG "H4'" H4* H 0 1 N N N 58.455 41.664 -26.267 3.008 -2.117 -1.157 "H4'" 8MG 34 8MG "H1'" H1* H 0 1 N N N 61.430 42.341 -25.815 2.853 0.503 1.007 "H1'" 8MG 35 8MG "H3'" H3* H 0 1 N N N 59.468 38.937 -25.557 0.475 -2.383 -0.018 "H3'" 8MG 36 8MG "HO3'" H3T H 0 0 N Y N 57.978 39.275 -27.297 2.928 -1.706 1.218 "HO3'" 8MG 37 8MG HC1 1HC H 0 1 N N N 62.967 43.725 -24.594 1.320 3.283 2.939 HC1 8MG 38 8MG HC2 2HC H 0 1 N N N 63.319 43.768 -22.849 -0.058 2.293 2.396 HC2 8MG 39 8MG HC3 3HC H 0 1 N N N 61.651 43.510 -23.414 1.536 1.557 2.555 HC3 8MG 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8MG P OP3 SING N N 1 8MG P OP2 SING N N 2 8MG P "O5'" SING N N 3 8MG P OP1 DOUB N N 4 8MG OP3 H3P SING N N 5 8MG OP2 H2P SING N N 6 8MG "O5'" "C5'" SING N N 7 8MG N9 C4 SING Y N 8 8MG N9 C8 SING Y N 9 8MG N9 "C1'" SING N N 10 8MG C4 N3 SING N N 11 8MG C4 C5 DOUB Y N 12 8MG N3 C2 DOUB N N 13 8MG C2 N2 SING N N 14 8MG C2 N1 SING N N 15 8MG N2 H21 SING N N 16 8MG N2 H22 SING N N 17 8MG N1 C6 SING N N 18 8MG N1 H1 SING N N 19 8MG C6 O6 DOUB N N 20 8MG C6 C5 SING N N 21 8MG C5 N7 SING Y N 22 8MG N7 C8 DOUB Y N 23 8MG C8 C SING N N 24 8MG "C2'" "C1'" SING N N 25 8MG "C2'" "C3'" SING N N 26 8MG "C2'" "H2'" SING N N 27 8MG "C2'" "H2''" SING N N 28 8MG "C5'" "C4'" SING N N 29 8MG "C5'" "H5'" SING N N 30 8MG "C5'" "H5''" SING N N 31 8MG "C4'" "O4'" SING N N 32 8MG "C4'" "C3'" SING N N 33 8MG "C4'" "H4'" SING N N 34 8MG "O4'" "C1'" SING N N 35 8MG "C1'" "H1'" SING N N 36 8MG "C3'" "O3'" SING N N 37 8MG "C3'" "H3'" SING N N 38 8MG "O3'" "HO3'" SING N N 39 8MG C HC1 SING N N 40 8MG C HC2 SING N N 41 8MG C HC3 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8MG SMILES ACDLabs 10.04 "O=C1c2nc(n(c2N=C(N)N1)C3OC(C(O)C3)COP(=O)(O)O)C" 8MG SMILES_CANONICAL CACTVS 3.341 "Cc1nc2C(=O)NC(=Nc2n1[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)N" 8MG SMILES CACTVS 3.341 "Cc1nc2C(=O)NC(=Nc2n1[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)N" 8MG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C(NC2=O)N" 8MG SMILES "OpenEye OEToolkits" 1.5.0 "Cc1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=C(NC2=O)N" 8MG InChI InChI 1.03 "InChI=1S/C11H16N5O7P/c1-4-13-8-9(14-11(12)15-10(8)18)16(4)7-2-5(17)6(23-7)3-22-24(19,20)21/h5-7,17H,2-3H2,1H3,(H2,19,20,21)(H3,12,14,15,18)/t5-,6+,7+/m0/s1" 8MG InChIKey InChI 1.03 MKPWVGWAKMPLFJ-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8MG "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-8-methylguanosine 5'-(dihydrogen phosphate) ; 8MG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(2-amino-8-methyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8MG "Create component" 2003-10-08 RCSB 8MG "Modify descriptor" 2011-06-04 RCSB #