data_8NA # _chem_comp.id 8NA _chem_comp.name "alpha-Diphosphopyridine nucleotide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 N7 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms alpha-NAD _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-08-29 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 663.425 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8NA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WGG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8NA PA PA P 0 1 N N N 4.647 27.050 13.975 -1.212 3.223 -0.319 PA 8NA 1 8NA O1A O1A O 0 1 N N N 3.491 27.539 14.803 -1.804 3.775 1.072 O1A 8NA 2 8NA O2A O2A O 0 1 N N N 5.297 28.275 13.091 -1.108 4.337 -1.288 O2A 8NA 3 8NA O5B O5B O 0 1 N N N 4.184 25.891 12.918 -2.193 2.090 -0.908 O5B 8NA 4 8NA C5B C5B C 0 1 N N N 3.471 24.815 13.543 -3.530 2.362 -1.332 C5B 8NA 5 8NA C4B C4B C 0 1 N N R 2.586 24.274 12.405 -4.179 1.071 -1.835 C4B 8NA 6 8NA O4B O4B O 0 1 N N N 2.079 22.962 12.623 -4.343 0.150 -0.743 O4B 8NA 7 8NA C3B C3B C 0 1 N N S 1.390 25.186 12.151 -5.583 1.373 -2.394 C3B 8NA 8 8NA O3B O3B O 0 1 N N N 1.415 25.547 10.753 -5.662 1.004 -3.773 O3B 8NA 9 8NA C2B C2B C 0 1 N N R 0.167 24.266 12.541 -6.528 0.491 -1.543 C2B 8NA 10 8NA O2B O2B O 0 1 N N N -1.015 24.611 11.797 -7.543 -0.101 -2.356 O2B 8NA 11 8NA C1B C1B C 0 1 N N R 0.711 22.917 12.141 -5.560 -0.586 -0.992 C1B 8NA 12 8NA N9A N9A N 0 1 Y N N 0.109 21.790 12.786 -6.079 -1.161 0.251 N9A 8NA 13 8NA C8A C8A C 0 1 Y N N -0.310 21.653 14.101 -5.761 -0.766 1.517 C8A 8NA 14 8NA N7A N7A N 0 1 Y N N -0.756 20.429 14.308 -6.405 -1.491 2.384 N7A 8NA 15 8NA C5A C5A C 0 1 Y N N -0.644 19.724 13.137 -7.175 -2.396 1.732 C5A 8NA 16 8NA C6A C6A C 0 1 Y N N -0.915 18.402 12.709 -8.060 -3.411 2.133 C6A 8NA 17 8NA N6A N6A N 0 1 N N N -1.419 17.457 13.571 -8.297 -3.655 3.474 N6A 8NA 18 8NA N1A N1A N 0 1 Y N N -0.667 18.080 11.458 -8.666 -4.130 1.194 N1A 8NA 19 8NA C2A C2A C 0 1 Y N N -0.176 18.950 10.565 -8.446 -3.903 -0.089 C2A 8NA 20 8NA N3A N3A N 0 1 Y N N 0.098 20.179 10.900 -7.626 -2.964 -0.510 N3A 8NA 21 8NA C4A C4A C 0 1 Y N N -0.109 20.609 12.152 -6.980 -2.190 0.356 C4A 8NA 22 8NA O3 O3 O 0 1 N N N 5.722 26.405 15.060 0.248 2.591 -0.069 O3 8NA 23 8NA PN PN P 0 1 N N N 7.214 26.178 14.435 1.706 3.217 0.199 PN 8NA 24 8NA O1N O1N O -1 1 N N N 8.071 27.487 14.550 2.274 3.784 -1.122 O1N 8NA 25 8NA O2N O2N O 0 1 N N N 7.177 25.786 12.989 1.596 4.353 1.241 O2N 8NA 26 8NA O5D O5D O 0 1 N N N 7.948 25.051 15.359 2.689 2.070 0.756 O5D 8NA 27 8NA C5D C5D C 0 1 N N N 7.223 23.814 15.394 4.026 2.333 1.188 C5D 8NA 28 8NA C4D C4D C 0 1 N N R 7.870 22.925 16.488 4.676 1.029 1.655 C4D 8NA 29 8NA O4D O4D O 0 1 N N N 9.267 23.366 16.780 4.840 0.142 0.542 O4D 8NA 30 8NA C3D C3D C 0 1 N N S 7.132 22.994 17.841 6.079 1.321 2.230 C3D 8NA 31 8NA O3D O3D O 0 1 N N N 7.261 21.709 18.508 6.050 1.335 3.659 O3D 8NA 32 8NA C2D C2D C 0 1 N N R 7.864 24.098 18.602 6.907 0.115 1.707 C2D 8NA 33 8NA O2D O2D O 0 1 N N N 7.725 23.915 19.996 6.758 -1.021 2.560 O2D 8NA 34 8NA C1D C1D C 0 1 N N S 9.345 24.010 18.087 6.235 -0.127 0.331 C1D 8NA 35 8NA N1N N1N N 1 1 Y N N 10.265 23.196 18.956 6.426 -1.518 -0.090 N1N 8NA 36 8NA C2N C2N C 0 1 Y N N 10.759 23.764 20.116 7.399 -1.804 -0.930 C2N 8NA 37 8NA C3N C3N C 0 1 Y N N 11.604 23.096 20.953 7.609 -3.117 -1.352 C3N 8NA 38 8NA C7N C7N C 0 1 N N N 12.078 23.767 22.102 8.701 -3.438 -2.295 C7N 8NA 39 8NA O7N O7N O 0 1 N N N 11.500 24.792 22.515 9.426 -2.554 -2.710 O7N 8NA 40 8NA N7N N7N N 0 1 N N N 13.183 23.290 22.743 8.894 -4.710 -2.696 N7N 8NA 41 8NA C4N C4N C 0 1 Y N N 12.061 21.662 20.656 6.768 -4.126 -0.867 C4N 8NA 42 8NA C5N C5N C 0 1 Y N N 11.474 21.146 19.351 5.762 -3.773 0.014 C5N 8NA 43 8NA C6N C6N C 0 1 Y N N 10.648 21.871 18.587 5.622 -2.448 0.388 C6N 8NA 44 8NA H1 H1 H 0 1 N N N 3.363 28.468 14.651 -1.900 3.097 1.756 H1 8NA 45 8NA H2 H2 H 0 1 N N N 2.858 25.181 14.380 -4.105 2.755 -0.493 H2 8NA 46 8NA H3 H3 H 0 1 N N N 4.163 24.041 13.907 -3.513 3.097 -2.137 H3 8NA 47 8NA H4 H4 H 0 1 N N N 3.197 24.269 11.490 -3.558 0.621 -2.609 H4 8NA 48 8NA H5 H5 H 0 1 N N N 1.424 26.068 12.807 -5.826 2.428 -2.266 H5 8NA 49 8NA H6 H6 H 0 1 N N N 0.680 26.117 10.560 -6.524 1.173 -4.176 H6 8NA 50 8NA H7 H7 H 0 1 N N N -0.004 24.312 13.627 -6.971 1.068 -0.730 H7 8NA 51 8NA H8 H8 H 0 1 N N N -1.327 25.464 12.076 -8.120 0.539 -2.794 H8 8NA 52 8NA H9 H9 H 0 1 N N N 0.685 22.809 11.047 -5.391 -1.366 -1.735 H9 8NA 53 8NA H10 H10 H 0 1 N N N -0.276 22.434 14.846 -5.075 0.032 1.763 H10 8NA 54 8NA H11 H11 H 0 1 N N N -1.535 16.590 13.086 -7.850 -3.123 4.150 H11 8NA 55 8NA H12 H12 H 0 1 N N N -0.785 17.330 14.334 -8.911 -4.359 3.738 H12 8NA 56 8NA H13 H13 H 0 1 N N N -0.004 18.627 9.549 -8.955 -4.515 -0.820 H13 8NA 57 8NA H15 H15 H 0 1 N N N 6.168 24.004 15.640 4.600 2.749 0.360 H15 8NA 58 8NA H16 H16 H 0 1 N N N 7.287 23.313 14.417 4.008 3.046 2.012 H16 8NA 59 8NA H17 H17 H 0 1 N N N 7.878 21.882 16.139 4.054 0.557 2.415 H17 8NA 60 8NA H18 H18 H 0 1 N N N 6.077 23.266 17.687 6.470 2.261 1.842 H18 8NA 61 8NA H19 H19 H 0 1 N N N 6.810 21.739 19.344 6.907 1.514 4.068 H19 8NA 62 8NA H20 H20 H 0 1 N N N 7.451 25.072 18.300 7.957 0.381 1.590 H20 8NA 63 8NA H21 H21 H 0 1 N N N 8.185 24.608 20.454 7.067 -0.877 3.465 H21 8NA 64 8NA H22 H22 H 0 1 N N N 9.743 25.030 17.984 6.644 0.554 -0.415 H22 8NA 65 8NA H23 H23 H 0 1 N N N 10.465 24.772 20.368 8.040 -1.015 -1.296 H23 8NA 66 8NA H24 H24 H 0 1 N N N 13.536 23.763 23.551 8.316 -5.415 -2.365 H24 8NA 67 8NA H25 H25 H 0 1 N N N 13.641 22.467 22.405 9.611 -4.920 -3.315 H25 8NA 68 8NA H26 H26 H 0 1 N N N 12.718 21.090 21.294 6.902 -5.153 -1.173 H26 8NA 69 8NA H27 H27 H 0 1 N N N 11.736 20.150 19.026 5.094 -4.524 0.409 H27 8NA 70 8NA H28 H28 H 0 1 N N N 10.263 21.445 17.672 4.840 -2.171 1.079 H28 8NA 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8NA C2A N3A DOUB Y N 1 8NA C2A N1A SING Y N 2 8NA O3B C3B SING N N 3 8NA N3A C4A SING Y N 4 8NA N1A C6A DOUB Y N 5 8NA O2B C2B SING N N 6 8NA C1B C2B SING N N 7 8NA C1B O4B SING N N 8 8NA C1B N9A SING N N 9 8NA C3B C4B SING N N 10 8NA C3B C2B SING N N 11 8NA C4A N9A SING Y N 12 8NA C4A C5A DOUB Y N 13 8NA C4B O4B SING N N 14 8NA C4B C5B SING N N 15 8NA C6A C5A SING Y N 16 8NA C6A N6A SING N N 17 8NA N9A C8A SING Y N 18 8NA O5B C5B SING N N 19 8NA O5B PA SING N N 20 8NA O2N PN DOUB N N 21 8NA O2A PA DOUB N N 22 8NA C5A N7A SING Y N 23 8NA PA O1A SING N N 24 8NA PA O3 SING N N 25 8NA C8A N7A DOUB Y N 26 8NA PN O1N SING N N 27 8NA PN O3 SING N N 28 8NA PN O5D SING N N 29 8NA O5D C5D SING N N 30 8NA C5D C4D SING N N 31 8NA C4D O4D SING N N 32 8NA C4D C3D SING N N 33 8NA O4D C1D SING N N 34 8NA C3D O3D SING N N 35 8NA C3D C2D SING N N 36 8NA C1D C2D SING N N 37 8NA C1D N1N SING N N 38 8NA C6N N1N DOUB Y N 39 8NA C6N C5N SING Y N 40 8NA C2D O2D SING N N 41 8NA N1N C2N SING Y N 42 8NA C5N C4N DOUB Y N 43 8NA C2N C3N DOUB Y N 44 8NA C4N C3N SING Y N 45 8NA C3N C7N SING N N 46 8NA C7N O7N DOUB N N 47 8NA C7N N7N SING N N 48 8NA O1A H1 SING N N 49 8NA C5B H2 SING N N 50 8NA C5B H3 SING N N 51 8NA C4B H4 SING N N 52 8NA C3B H5 SING N N 53 8NA O3B H6 SING N N 54 8NA C2B H7 SING N N 55 8NA O2B H8 SING N N 56 8NA C1B H9 SING N N 57 8NA C8A H10 SING N N 58 8NA N6A H11 SING N N 59 8NA N6A H12 SING N N 60 8NA C2A H13 SING N N 61 8NA C5D H15 SING N N 62 8NA C5D H16 SING N N 63 8NA C4D H17 SING N N 64 8NA C3D H18 SING N N 65 8NA O3D H19 SING N N 66 8NA C2D H20 SING N N 67 8NA O2D H21 SING N N 68 8NA C1D H22 SING N N 69 8NA C2N H23 SING N N 70 8NA N7N H24 SING N N 71 8NA N7N H25 SING N N 72 8NA C4N H26 SING N N 73 8NA C5N H27 SING N N 74 8NA C6N H28 SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8NA InChI InChI 1.03 "InChI=1S/C21H27N7O14P2/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(32)14(30)11(41-21)6-39-44(36,37)42-43(34,35)38-5-10-13(29)15(31)20(40-10)27-3-1-2-9(4-27)18(23)33/h1-4,7-8,10-11,13-16,20-21,29-32H,5-6H2,(H5-,22,23,24,25,33,34,35,36,37)/t10-,11-,13-,14-,15-,16-,20+,21-/m1/s1" 8NA InChIKey InChI 1.03 BAWFJGJZGIEFAR-OPDHFMQKSA-N 8NA SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1ccc[n+](c1)[C@H]2O[C@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" 8NA SMILES CACTVS 3.385 "NC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" 8NA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(c[n+](c1)[C@@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)([O-])OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N" 8NA SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)N" # _pdbx_chem_comp_identifier.comp_id 8NA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.7.6 _pdbx_chem_comp_identifier.identifier "[(2R,3S,4R,5S)-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl [[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8NA "Create component" 2013-08-29 PDBJ 8NA "Initial release" 2014-08-13 RCSB 8NA "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8NA _pdbx_chem_comp_synonyms.name alpha-NAD _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##