data_8PA # _chem_comp.id 8PA _chem_comp.name "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2-[(1S,2E)-1-hydroxy-3-pyridin-3-ylprop-2-en-1-yl]-4-methyl-1,3-thiazol-3-ium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H26 N5 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2008-11-07 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 558.462 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8PA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8PA C1I C1I C 0 1 Y N N 64.675 57.924 157.606 -5.340 -4.445 1.086 C1 8PA 1 8PA C1G C1G C 0 1 Y N N 64.255 59.261 157.505 -5.338 -5.821 1.230 C2 8PA 2 8PA C1H C1H C 0 1 Y N N 64.666 60.205 158.464 -4.418 -6.574 0.522 C3 8PA 3 8PA N1K N1K N 0 1 Y N N 65.448 59.854 159.507 -3.547 -6.002 -0.286 N1 8PA 4 8PA C1J C1J C 0 1 Y N N 65.848 58.585 159.635 -3.511 -4.696 -0.456 C4 8PA 5 8PA C1N C1N C 0 1 Y N N 65.464 57.605 158.719 -4.404 -3.866 0.222 C5 8PA 6 8PA C1F C1F C 0 1 N N N 66.036 56.346 159.002 -4.367 -2.402 0.026 C6 8PA 7 8PA C1E C1E C 0 1 N N N 65.473 55.130 158.942 -3.475 -1.866 -0.796 C7 8PA 8 8PA C1M C1M C 0 1 N N S 66.201 53.945 159.220 -3.515 -0.388 -1.090 C8 8PA 9 8PA O1D O1D O 0 1 N N N 66.076 52.962 158.243 -3.826 -0.186 -2.470 O1 8PA 10 8PA C1Q C1Q C 0 1 Y N N 66.786 53.502 160.554 -2.171 0.221 -0.783 C9 8PA 11 8PA S1 S1 S 0 1 Y N N 66.321 54.378 162.022 -0.778 0.064 -1.763 S1 8PA 12 8PA C5 C5 C 0 1 Y N N 66.814 53.011 163.004 0.143 1.046 -0.626 C10 8PA 13 8PA C6 C6 C 0 1 N N N 66.625 53.053 164.505 1.595 1.425 -0.756 C11 8PA 14 8PA C7 C7 C 0 1 N N N 67.625 53.948 165.283 2.462 0.363 -0.076 C12 8PA 15 8PA O7 O7 O 0 1 N N N 67.259 53.777 166.700 3.840 0.723 -0.200 O2 8PA 16 8PA P1A P1A P 0 1 N N S 67.830 54.765 167.756 5.037 -0.170 0.402 P1 8PA 17 8PA O2A O2A O 0 1 N N N 67.642 54.091 169.104 4.932 -0.194 2.009 O3 8PA 18 8PA O1A O1A O 0 1 N N N 69.192 55.270 167.418 4.933 -1.551 -0.120 O4 8PA 19 8PA O3A O3A O 0 1 N N N 66.908 56.019 167.689 6.451 0.464 -0.034 O5 8PA 20 8PA P1B P1B P 0 1 N N N 65.249 56.191 167.851 7.952 -0.111 -0.129 P2 8PA 21 8PA O2B O2B O 0 1 N N N 64.685 55.837 166.476 7.931 -1.442 -0.775 O6 8PA 22 8PA O1B O1B O 0 1 N N N 64.793 55.232 168.946 8.857 0.896 -1.001 O7 8PA 23 8PA O3B O3B O 0 1 N N N 65.054 57.627 168.199 8.571 -0.243 1.352 O8 8PA 24 8PA C4 C4 C 0 1 Y N N 67.334 51.998 162.208 -0.675 1.395 0.372 C13 8PA 25 8PA C4M C4M C 0 1 N N N 67.904 50.688 162.784 -0.226 2.244 1.534 C14 8PA 26 8PA N3 N3 N 1 1 Y N N 67.305 52.269 160.889 -1.906 0.942 0.254 N2 8PA 27 8PA C7S C7S C 0 1 N N N 67.873 51.305 159.931 -2.930 1.239 1.259 C15 8PA 28 8PA C5S C5S C 0 1 Y N N 69.386 51.431 159.720 -3.724 2.444 0.825 C16 8PA 29 8PA C6S C6S C 0 1 Y N N 70.128 50.290 159.912 -3.113 3.670 0.652 C17 8PA 30 8PA N1S N1S N 0 1 Y N N 71.471 50.240 159.685 -3.843 4.709 0.270 N3 8PA 31 8PA C2S C2S C 0 1 Y N N 72.076 51.384 159.333 -5.137 4.586 0.055 C18 8PA 32 8PA C2M C2M C 0 1 N N N 73.595 51.350 159.049 -5.926 5.795 -0.378 C19 8PA 33 8PA N3S N3S N 0 1 Y N N 71.406 52.504 159.087 -5.761 3.436 0.207 N4 8PA 34 8PA C4S C4S C 0 1 Y N N 70.086 52.556 159.276 -5.096 2.348 0.583 C20 8PA 35 8PA N4S N4S N 0 1 N N N 69.483 53.690 158.996 -5.756 1.140 0.743 N5 8PA 36 8PA H1I H1I H 0 1 N N N 64.405 57.184 156.867 -6.050 -3.833 1.624 H1 8PA 37 8PA H1G H1G H 0 1 N N N 63.615 59.565 156.690 -6.045 -6.302 1.889 H2 8PA 38 8PA H1H H1H H 0 1 N N N 64.349 61.233 158.364 -4.414 -7.648 0.633 H3 8PA 39 8PA H1J H1J H 0 1 N N N 66.482 58.312 160.466 -2.783 -4.264 -1.127 H4 8PA 40 8PA H1F H1F H 0 1 N N N 67.071 56.364 159.310 -5.066 -1.769 0.552 H5 8PA 41 8PA H1E H1E H 0 1 N N N 64.430 55.051 158.673 -2.721 -2.488 -1.255 H6 8PA 42 8PA H6 H6 H 0 1 N N N 65.614 53.441 164.700 1.861 1.489 -1.811 H7 8PA 43 8PA H6A H6A H 0 1 N N N 66.795 52.026 164.862 1.763 2.391 -0.280 H8 8PA 44 8PA H7 H7 H 0 1 N N N 68.663 53.631 165.102 2.197 0.299 0.979 H9 8PA 45 8PA H7A H7A H 0 1 N N N 67.571 55.000 164.966 2.295 -0.603 -0.553 H10 8PA 46 8PA HO2A HO2A H 0 0 N N N 67.603 53.149 168.985 4.993 0.678 2.420 H11 8PA 47 8PA HO1B HO1B H 0 0 N N N 64.698 54.359 168.584 9.777 0.612 -1.100 H12 8PA 48 8PA HO3B HO3B H 0 0 N N N 65.013 57.722 169.143 8.615 0.594 1.836 H13 8PA 49 8PA H4M H4M H 0 1 N N N 68.040 49.958 161.972 -0.307 3.297 1.267 H14 8PA 50 8PA H4MA H4MA H 0 0 N N N 68.874 50.889 163.262 -0.858 2.039 2.398 H15 8PA 51 8PA H4MB H4MB H 0 0 N N N 67.205 50.281 163.529 0.810 2.009 1.777 H16 8PA 52 8PA H7S H7S H 0 1 N N N 67.670 50.293 160.312 -3.596 0.383 1.363 H17 8PA 53 8PA H7SA H7SA H 0 0 N N N 67.401 51.512 158.959 -2.450 1.445 2.216 H18 8PA 54 8PA H6S H6S H 0 1 N N N 69.627 49.397 160.256 -2.053 3.782 0.826 H19 8PA 55 8PA H2M H2M H 0 1 N N N 73.765 51.342 157.962 -5.930 5.856 -1.467 H20 8PA 56 8PA H2MA H2MA H 0 0 N N N 74.070 52.240 159.488 -6.950 5.711 -0.015 H21 8PA 57 8PA H2MB H2MB H 0 0 N N N 74.031 50.444 159.495 -5.467 6.695 0.033 H22 8PA 58 8PA HN4S HN4S H 0 0 N N N 69.330 54.204 159.840 -6.677 1.048 0.454 H23 8PA 59 8PA HN4A HN4A H 0 0 N N N 70.056 54.228 158.378 -5.296 0.385 1.143 H24 8PA 60 8PA H25 H25 H 0 1 N N N 67.083 54.597 159.308 -4.278 0.085 -0.473 H25 8PA 61 8PA H26 H26 H 0 1 N N N 66.048 53.369 157.385 -3.187 -0.581 -3.079 H26 8PA 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8PA C1I C1N SING Y N 1 8PA C1I H1I SING N N 2 8PA C1G C1I DOUB Y N 3 8PA C1G C1H SING Y N 4 8PA C1G H1G SING N N 5 8PA C1H N1K DOUB Y N 6 8PA C1H H1H SING N N 7 8PA N1K C1J SING Y N 8 8PA C1J H1J SING N N 9 8PA C1N C1J DOUB Y N 10 8PA C1N C1F SING N N 11 8PA C1F H1F SING N N 12 8PA C1E C1F DOUB N E 13 8PA C1E C1M SING N N 14 8PA C1E H1E SING N N 15 8PA C1M C1Q SING N N 16 8PA O1D C1M SING N N 17 8PA C1Q N3 DOUB Y N 18 8PA C1Q S1 SING Y N 19 8PA S1 C5 SING Y N 20 8PA C5 C6 SING N N 21 8PA C6 C7 SING N N 22 8PA C6 H6 SING N N 23 8PA C6 H6A SING N N 24 8PA C7 O7 SING N N 25 8PA C7 H7 SING N N 26 8PA C7 H7A SING N N 27 8PA O7 P1A SING N N 28 8PA P1A O2A SING N N 29 8PA O2A HO2A SING N N 30 8PA O1A P1A DOUB N N 31 8PA O3A P1A SING N N 32 8PA O3A P1B SING N N 33 8PA P1B O3B SING N N 34 8PA P1B O1B SING N N 35 8PA O2B P1B DOUB N N 36 8PA O1B HO1B SING N N 37 8PA O3B HO3B SING N N 38 8PA C4 C5 DOUB Y N 39 8PA C4 C4M SING N N 40 8PA C4M H4M SING N N 41 8PA C4M H4MA SING N N 42 8PA C4M H4MB SING N N 43 8PA N3 C4 SING Y N 44 8PA C7S N3 SING N N 45 8PA C7S H7S SING N N 46 8PA C7S H7SA SING N N 47 8PA C5S C7S SING N N 48 8PA C5S C6S SING Y N 49 8PA C6S H6S SING N N 50 8PA N1S C6S DOUB Y N 51 8PA C2S N1S SING Y N 52 8PA C2M C2S SING N N 53 8PA C2M H2M SING N N 54 8PA C2M H2MA SING N N 55 8PA C2M H2MB SING N N 56 8PA N3S C2S DOUB Y N 57 8PA N3S C4S SING Y N 58 8PA C4S C5S DOUB Y N 59 8PA N4S C4S SING N N 60 8PA N4S HN4S SING N N 61 8PA N4S HN4A SING N N 62 8PA C1M H25 SING N N 63 8PA O1D H26 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8PA SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCCc1sc([n+](c1C)Cc2cnc(nc2N)C)C(O)\C=C\c3cccnc3" 8PA SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(C[n+]2c(C)c(CCO[P@@](O)(=O)O[P](O)(O)=O)sc2[C@@H](O)\C=C\c3cccnc3)c(N)n1" 8PA SMILES CACTVS 3.341 "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[CH](O)C=Cc3cccnc3)c(N)n1" 8PA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@H](\C=C\c3cccnc3)O)CCO[P@](=O)(O)OP(=O)(O)O" 8PA SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(C=Cc3cccnc3)O)CCOP(=O)(O)OP(=O)(O)O" 8PA InChI InChI 1.03 "InChI=1S/C20H25N5O8P2S/c1-13-18(7-9-32-35(30,31)33-34(27,28)29)36-20(17(26)6-5-15-4-3-8-22-10-15)25(13)12-16-11-23-14(2)24-19(16)21/h3-6,8,10-11,17,26H,7,9,12H2,1-2H3,(H4-,21,23,24,27,28,29,30,31)/p+1/b6-5+/t17-/m0/s1" 8PA InChIKey InChI 1.03 HUCLASQGRJZNFE-RTRPANQVSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8PA "SYSTEMATIC NAME" ACDLabs 10.04 "3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-2-[(1S,2E)-1-hydroxy-3-pyridin-3-ylprop-2-en-1-yl]-4-methyl-1,3-thiazol-3-ium" 8PA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-2-[(E,1S)-1-hydroxy-3-pyridin-3-yl-prop-2-enyl]-4-methyl-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8PA "Create component" 2008-11-07 RCSB 8PA "Modify aromatic_flag" 2011-06-04 RCSB 8PA "Modify descriptor" 2011-06-04 RCSB #