data_8PD # _chem_comp.id 8PD _chem_comp.name "(2~{S})-2-(hexadecanoylamino)-4-oxidanyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H39 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-12-23 _chem_comp.pdbx_modified_date 2022-12-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.528 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8PD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7W97 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8PD O21 O1 O 0 1 N N N 18.043 -2.643 57.900 -8.800 -2.226 0.397 O21 8PD 1 8PD C01 C1 C 0 1 N N N 21.804 -14.472 49.379 13.787 0.197 -0.207 C01 8PD 2 8PD C02 C2 C 0 1 N N N 20.717 -13.972 48.461 12.516 -0.246 0.521 C02 8PD 3 8PD C03 C3 C 0 1 N N N 19.876 -12.932 49.152 11.289 0.219 -0.266 C03 8PD 4 8PD C04 C4 C 0 1 N N N 18.415 -13.176 49.264 10.018 -0.225 0.462 C04 8PD 5 8PD C05 C5 C 0 1 N N N 17.940 -12.009 50.127 8.791 0.241 -0.325 C05 8PD 6 8PD C06 C6 C 0 1 N N N 16.868 -11.281 49.375 7.521 -0.203 0.403 C06 8PD 7 8PD C07 C7 C 0 1 N N N 16.236 -10.362 50.415 6.294 0.262 -0.384 C07 8PD 8 8PD C08 C8 C 0 1 N N N 15.872 -9.074 49.732 5.023 -0.181 0.343 C08 8PD 9 8PD C09 C9 C 0 1 N N N 15.002 -8.174 50.626 3.796 0.284 -0.443 C09 8PD 10 8PD C10 C10 C 0 1 N N N 15.812 -7.449 51.673 2.525 -0.160 0.284 C10 8PD 11 8PD C11 C11 C 0 1 N N N 14.932 -6.298 52.170 1.298 0.305 -0.502 C11 8PD 12 8PD C12 C12 C 0 1 N N N 14.253 -6.741 53.441 0.027 -0.138 0.225 C12 8PD 13 8PD C13 C13 C 0 1 N N N 13.925 -5.480 54.231 -1.199 0.327 -0.562 C13 8PD 14 8PD C14 C14 C 0 1 N N N 13.371 -5.964 55.550 -2.470 -0.116 0.166 C14 8PD 15 8PD C15 C15 C 0 1 N N N 12.626 -4.778 56.159 -3.697 0.349 -0.621 C15 8PD 16 8PD C16 C16 C 0 1 N N N 13.517 -3.623 56.571 -4.949 -0.088 0.096 C16 8PD 17 8PD N17 N1 N 0 1 N N N 14.754 -3.866 57.145 -6.159 0.212 -0.417 N17 8PD 18 8PD C18 C17 C 0 1 N N S 15.668 -2.788 57.626 -7.375 -0.212 0.280 C18 8PD 19 8PD C19 C18 C 0 1 N N N 17.086 -3.389 57.579 -7.717 -1.624 -0.121 C19 8PD 20 8PD O20 O2 O 0 1 N N N 17.206 -4.594 57.227 -7.016 -2.215 -0.908 O20 8PD 21 8PD C22 C19 C 0 1 N N N 15.210 -2.451 59.052 -8.530 0.718 -0.097 C22 8PD 22 8PD C23 C20 C 0 1 N N N 15.844 -1.161 59.605 -8.238 2.128 0.421 C23 8PD 23 8PD O24 O3 O 0 1 N N N 16.961 -1.652 60.300 -9.317 2.997 0.069 O24 8PD 24 8PD O25 O4 O 0 1 N N N 13.167 -2.400 56.394 -4.867 -0.710 1.134 O25 8PD 25 8PD H1 H1 H 0 1 N N N 18.858 -3.127 57.835 -8.978 -3.132 0.109 H1 8PD 26 8PD H2 H2 H 0 1 N N N 22.406 -15.230 48.856 14.661 -0.134 0.354 H2 8PD 27 8PD H3 H3 H 0 1 N N N 22.449 -13.632 49.675 13.806 -0.242 -1.204 H3 8PD 28 8PD H4 H4 H 0 1 N N N 21.350 -14.919 50.275 13.798 1.284 -0.288 H4 8PD 29 8PD H5 H5 H 0 1 N N N 20.077 -14.816 48.165 12.505 -1.333 0.603 H5 8PD 30 8PD H6 H6 H 0 1 N N N 21.176 -13.529 47.565 12.496 0.193 1.518 H6 8PD 31 8PD H7 H7 H 0 1 N N N 20.268 -12.821 50.174 11.300 1.306 -0.348 H7 8PD 32 8PD H8 H8 H 0 1 N N N 20.008 -11.988 48.604 11.309 -0.221 -1.263 H8 8PD 33 8PD H9 H9 H 0 1 N N N 17.934 -13.159 48.275 10.007 -1.311 0.543 H9 8PD 34 8PD H10 H10 H 0 1 N N N 18.211 -14.139 49.754 9.998 0.215 1.459 H10 8PD 35 8PD H11 H11 H 0 1 N N N 17.537 -12.388 51.078 8.803 1.327 -0.407 H11 8PD 36 8PD H12 H12 H 0 1 N N N 18.780 -11.329 50.330 8.811 -0.199 -1.322 H12 8PD 37 8PD H13 H13 H 0 1 N N N 17.300 -10.696 48.549 7.509 -1.290 0.484 H13 8PD 38 8PD H14 H14 H 0 1 N N N 16.125 -11.986 48.975 7.501 0.237 1.400 H14 8PD 39 8PD H15 H15 H 0 1 N N N 15.333 -10.833 50.831 6.305 1.349 -0.466 H15 8PD 40 8PD H16 H16 H 0 1 N N N 16.953 -10.166 51.226 6.313 -0.177 -1.382 H16 8PD 41 8PD H17 H17 H 0 1 N N N 16.796 -8.534 49.476 5.011 -1.268 0.425 H17 8PD 42 8PD H18 H18 H 0 1 N N N 15.315 -9.305 48.812 5.003 0.258 1.341 H18 8PD 43 8PD H19 H19 H 0 1 N N N 14.496 -7.430 49.993 3.807 1.371 -0.525 H19 8PD 44 8PD H20 H20 H 0 1 N N N 14.250 -8.798 51.131 3.816 -0.156 -1.441 H20 8PD 45 8PD H21 H21 H 0 1 N N N 16.058 -8.128 52.503 2.514 -1.247 0.366 H21 8PD 46 8PD H22 H22 H 0 1 N N N 16.741 -7.057 51.233 2.505 0.280 1.281 H22 8PD 47 8PD H23 H23 H 0 1 N N N 15.554 -5.413 52.369 1.309 1.392 -0.584 H23 8PD 48 8PD H24 H24 H 0 1 N N N 14.176 -6.052 51.410 1.318 -0.134 -1.500 H24 8PD 49 8PD H25 H25 H 0 1 N N N 13.330 -7.290 53.205 0.016 -1.225 0.307 H25 8PD 50 8PD H26 H26 H 0 1 N N N 14.926 -7.388 54.023 0.008 0.301 1.222 H26 8PD 51 8PD H27 H27 H 0 1 N N N 14.833 -4.880 54.392 -1.188 1.414 -0.643 H27 8PD 52 8PD H28 H28 H 0 1 N N N 13.176 -4.876 53.698 -1.180 -0.112 -1.559 H28 8PD 53 8PD H29 H29 H 0 1 N N N 12.681 -6.806 55.388 -2.481 -1.203 0.248 H29 8PD 54 8PD H30 H30 H 0 1 N N N 14.189 -6.282 56.213 -2.490 0.323 1.163 H30 8PD 55 8PD H31 H31 H 0 1 N N N 11.904 -4.407 55.417 -3.686 1.436 -0.702 H31 8PD 56 8PD H32 H32 H 0 1 N N N 12.087 -5.131 57.050 -3.677 -0.091 -1.618 H32 8PD 57 8PD H33 H33 H 0 1 N N N 15.051 -4.816 57.243 -6.224 0.710 -1.247 H33 8PD 58 8PD H34 H34 H 0 1 N N N 15.606 -1.899 56.981 -7.211 -0.170 1.357 H34 8PD 59 8PD H35 H35 H 0 1 N N N 14.117 -2.329 59.048 -8.637 0.744 -1.181 H35 8PD 60 8PD H36 H36 H 0 1 N N N 15.484 -3.286 59.713 -9.453 0.351 0.351 H36 8PD 61 8PD H37 H37 H 0 1 N N N 16.146 -0.485 58.792 -8.132 2.102 1.505 H37 8PD 62 8PD H38 H38 H 0 1 N N N 15.153 -0.636 60.281 -7.315 2.496 -0.026 H38 8PD 63 8PD H39 H39 H 0 1 N N N 17.436 -0.927 60.690 -9.199 3.910 0.366 H39 8PD 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8PD C02 C03 SING N N 1 8PD C02 C01 SING N N 2 8PD C03 C04 SING N N 3 8PD C04 C05 SING N N 4 8PD C06 C05 SING N N 5 8PD C06 C07 SING N N 6 8PD C08 C07 SING N N 7 8PD C08 C09 SING N N 8 8PD C09 C10 SING N N 9 8PD C10 C11 SING N N 10 8PD C11 C12 SING N N 11 8PD C12 C13 SING N N 12 8PD C13 C14 SING N N 13 8PD C14 C15 SING N N 14 8PD C15 C16 SING N N 15 8PD O25 C16 DOUB N N 16 8PD C16 N17 SING N N 17 8PD N17 C18 SING N N 18 8PD O20 C19 DOUB N N 19 8PD C19 C18 SING N N 20 8PD C19 O21 SING N N 21 8PD C18 C22 SING N N 22 8PD C22 C23 SING N N 23 8PD C23 O24 SING N N 24 8PD O21 H1 SING N N 25 8PD C01 H2 SING N N 26 8PD C01 H3 SING N N 27 8PD C01 H4 SING N N 28 8PD C02 H5 SING N N 29 8PD C02 H6 SING N N 30 8PD C03 H7 SING N N 31 8PD C03 H8 SING N N 32 8PD C04 H9 SING N N 33 8PD C04 H10 SING N N 34 8PD C05 H11 SING N N 35 8PD C05 H12 SING N N 36 8PD C06 H13 SING N N 37 8PD C06 H14 SING N N 38 8PD C07 H15 SING N N 39 8PD C07 H16 SING N N 40 8PD C08 H17 SING N N 41 8PD C08 H18 SING N N 42 8PD C09 H19 SING N N 43 8PD C09 H20 SING N N 44 8PD C10 H21 SING N N 45 8PD C10 H22 SING N N 46 8PD C11 H23 SING N N 47 8PD C11 H24 SING N N 48 8PD C12 H25 SING N N 49 8PD C12 H26 SING N N 50 8PD C13 H27 SING N N 51 8PD C13 H28 SING N N 52 8PD C14 H29 SING N N 53 8PD C14 H30 SING N N 54 8PD C15 H31 SING N N 55 8PD C15 H32 SING N N 56 8PD N17 H33 SING N N 57 8PD C18 H34 SING N N 58 8PD C22 H35 SING N N 59 8PD C22 H36 SING N N 60 8PD C23 H37 SING N N 61 8PD C23 H38 SING N N 62 8PD O24 H39 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8PD InChI InChI 1.03 "InChI=1S/C20H39NO4/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-19(23)21-18(16-17-22)20(24)25/h18,22H,2-17H2,1H3,(H,21,23)(H,24,25)/t18-/m0/s1" 8PD InChIKey InChI 1.03 GYSOJFKWYUVNCE-SFHVURJKSA-N 8PD SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)N[C@@H](CCO)C(O)=O" 8PD SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCC(=O)N[CH](CCO)C(O)=O" 8PD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)N[C@@H](CCO)C(=O)O" 8PD SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCCCCC(=O)NC(CCO)C(=O)O" # _pdbx_chem_comp_identifier.comp_id 8PD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-(hexadecanoylamino)-4-oxidanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8PD "Create component" 2021-12-23 PDBJ 8PD "Initial release" 2022-12-14 RCSB #