data_8PK # _chem_comp.id 8PK _chem_comp.name "4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-fucopyranose" _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C9 H18 O6" _chem_comp.mon_nstd_parent_comp_id FUC _chem_comp.pdbx_synonyms ;2-O-methyl, 4-O-Acetyl-alpha-L-fucosepyranose; 6-deoxy-4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-galactopyranose; 4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-fucose; 4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-L-fucose; 4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-fucose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-02-18 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 222.236 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8PK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5MUI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 8PK "2-O-methyl, 4-O-Acetyl-alpha-L-fucosepyranose" PDB ? 2 8PK "6-deoxy-4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-galactopyranose" PDB ? 3 8PK "4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-alpha-L-fucose" PDB ? 4 8PK "4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-L-fucose" PDB ? 5 8PK "4-O-[(1R)-1-hydroxyethyl]-2-O-methyl-fucose" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8PK O9 O9 O 0 1 N N N 22.939 -18.575 -14.166 3.578 0.080 0.463 O9 8PK 1 8PK C8 C8 C 0 1 N N R 21.566 -18.285 -14.401 2.549 0.944 -0.023 C8 8PK 2 8PK C10 C10 C 0 1 N N N 20.805 -19.597 -14.592 3.075 1.743 -1.217 C10 8PK 3 8PK O4 O4 O 0 1 N N N 21.030 -17.520 -13.309 1.424 0.163 -0.431 O4 8PK 4 8PK C4 C4 C 0 1 N N S 21.666 -16.245 -13.057 0.706 -0.432 0.652 C4 8PK 5 8PK C5 C5 C 0 1 N N S 21.593 -15.958 -11.557 0.207 -1.818 0.234 C5 8PK 6 8PK C6 C6 C 0 1 N N N 22.078 -17.167 -10.761 1.397 -2.683 -0.187 C6 8PK 7 8PK O5 O5 O 0 1 N N N 20.252 -15.652 -11.123 -0.698 -1.686 -0.863 O5 8PK 8 8PK C3 C3 C 0 1 N N R 21.008 -15.112 -13.847 -0.495 0.447 1.014 C3 8PK 9 8PK O3 O3 O 0 1 N N N 21.049 -15.375 -15.253 -0.044 1.764 1.335 O3 8PK 10 8PK C2 C2 C 0 1 N N S 19.564 -14.927 -13.369 -1.448 0.508 -0.183 C2 8PK 11 8PK O2 O2 O 0 1 N N N 18.891 -13.883 -14.124 -2.608 1.266 0.169 O2 8PK 12 8PK C7 C7 C 0 1 N N N 18.051 -14.355 -15.188 -3.207 1.955 -0.931 C7 8PK 13 8PK C1 C1 C 0 1 N N R 19.571 -14.631 -11.852 -1.864 -0.914 -0.568 C1 8PK 14 8PK O1 O1 O 0 1 N Y N 20.207 -13.373 -11.576 -2.571 -1.515 0.519 O1 8PK 15 8PK H1A H1 H 0 1 N N N 23.419 -17.764 -14.046 3.842 -0.608 -0.164 H1A 8PK 16 8PK H2A H2 H 0 1 N N N 21.472 -17.702 -15.329 2.247 1.630 0.768 H2A 8PK 17 8PK H3A H3 H 0 1 N N N 19.742 -19.382 -14.774 3.377 1.057 -2.009 H3A 8PK 18 8PK H4A H4 H 0 1 N N N 21.222 -20.141 -15.453 2.290 2.402 -1.588 H4A 8PK 19 8PK H5A H5 H 0 1 N N N 20.904 -20.213 -13.686 3.933 2.339 -0.906 H5A 8PK 20 8PK H4 H6 H 0 1 N N N 22.725 -16.300 -13.348 1.364 -0.527 1.516 H4 8PK 21 8PK H5 H7 H 0 1 N N N 22.254 -15.108 -11.334 -0.305 -2.288 1.074 H5 8PK 22 8PK H61 H8 H 0 1 N N N 22.020 -16.946 -9.685 2.132 -2.707 0.618 H61 8PK 23 8PK H62 H9 H 0 1 N N N 21.444 -18.036 -10.991 1.053 -3.696 -0.396 H62 8PK 24 8PK H63 H10 H 0 1 N N N 23.120 -17.391 -11.033 1.853 -2.262 -1.083 H63 8PK 25 8PK H3 H11 H 0 1 N N N 21.558 -14.184 -13.634 -1.014 0.019 1.872 H3 8PK 26 8PK HO3 H12 H 0 1 N Y N 21.951 -15.486 -15.529 -0.754 2.377 1.568 HO3 8PK 27 8PK H2 H13 H 0 1 N N N 19.032 -15.878 -13.523 -0.944 0.982 -1.026 H2 8PK 28 8PK H14 H14 H 0 1 N N N 17.588 -13.498 -15.698 -2.486 2.651 -1.360 H14 8PK 29 8PK H15 H15 H 0 1 N N N 18.657 -14.926 -15.907 -3.511 1.234 -1.689 H15 8PK 30 8PK H16 H16 H 0 1 N N N 17.265 -15.004 -14.774 -4.080 2.507 -0.582 H16 8PK 31 8PK H1 H17 H 0 1 N N N 18.524 -14.585 -11.517 -2.509 -0.879 -1.446 H1 8PK 32 8PK HO1 H18 H 0 1 N Y N 20.200 -13.213 -10.640 -2.866 -2.419 0.344 HO1 8PK 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8PK O3 C3 SING N N 1 8PK C7 O2 SING N N 2 8PK C10 C8 SING N N 3 8PK C8 O9 SING N N 4 8PK C8 O4 SING N N 5 8PK O2 C2 SING N N 6 8PK C3 C2 SING N N 7 8PK C3 C4 SING N N 8 8PK C2 C1 SING N N 9 8PK O4 C4 SING N N 10 8PK C4 C5 SING N N 11 8PK C1 O1 SING N N 12 8PK C1 O5 SING N N 13 8PK C5 O5 SING N N 14 8PK C5 C6 SING N N 15 8PK O9 H1A SING N N 16 8PK C8 H2A SING N N 17 8PK C10 H3A SING N N 18 8PK C10 H4A SING N N 19 8PK C10 H5A SING N N 20 8PK C4 H4 SING N N 21 8PK C5 H5 SING N N 22 8PK C6 H61 SING N N 23 8PK C6 H62 SING N N 24 8PK C6 H63 SING N N 25 8PK C3 H3 SING N N 26 8PK O3 HO3 SING N N 27 8PK C2 H2 SING N N 28 8PK C7 H14 SING N N 29 8PK C7 H15 SING N N 30 8PK C7 H16 SING N N 31 8PK C1 H1 SING N N 32 8PK O1 HO1 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8PK InChI InChI 1.03 "InChI=1S/C9H18O6/c1-4-7(15-5(2)10)6(11)8(13-3)9(12)14-4/h4-12H,1-3H3/t4-,5+,6+,7+,8-,9+/m0/s1" 8PK InChIKey InChI 1.03 MOOIWRPNHMPYOB-BARZSYDPSA-N 8PK SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@H](O)O[C@@H](C)[C@@H](O[C@H](C)O)[C@H]1O" 8PK SMILES CACTVS 3.385 "CO[CH]1[CH](O)O[CH](C)[CH](O[CH](C)O)[CH]1O" 8PK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)OC)O)O[C@H](C)O" 8PK SMILES "OpenEye OEToolkits" 2.0.6 "CC1C(C(C(C(O1)O)OC)O)OC(C)O" # _pdbx_chem_comp_identifier.comp_id 8PK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{S},4~{R},5~{S},6~{S})-3-methoxy-6-methyl-5-[(1~{R})-1-oxidanylethoxy]oxane-2,4-diol" # _pdbx_chem_comp_related.comp_id 8PK _pdbx_chem_comp_related.related_comp_id FUC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 8PK C1 FUC C1 "Carbohydrate core" 2 8PK C2 FUC C2 "Carbohydrate core" 3 8PK C3 FUC C3 "Carbohydrate core" 4 8PK C4 FUC C4 "Carbohydrate core" 5 8PK C5 FUC C5 "Carbohydrate core" 6 8PK C6 FUC C6 "Carbohydrate core" 7 8PK O1 FUC O1 "Carbohydrate core" 8 8PK O2 FUC O2 "Carbohydrate core" 9 8PK O3 FUC O3 "Carbohydrate core" 10 8PK O4 FUC O4 "Carbohydrate core" 11 8PK O5 FUC O5 "Carbohydrate core" 12 8PK H63 FUC H63 "Carbohydrate core" 13 8PK H3 FUC H3 "Carbohydrate core" 14 8PK HO3 FUC HO3 "Carbohydrate core" 15 8PK H2 FUC H2 "Carbohydrate core" 16 8PK H1 FUC H1 "Carbohydrate core" 17 8PK HO1 FUC HO1 "Carbohydrate core" 18 8PK H4 FUC H4 "Carbohydrate core" 19 8PK H5 FUC H5 "Carbohydrate core" 20 8PK H61 FUC H61 "Carbohydrate core" 21 8PK H62 FUC H62 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 8PK "CARBOHYDRATE ISOMER" L PDB ? 8PK "CARBOHYDRATE RING" pyranose PDB ? 8PK "CARBOHYDRATE ANOMER" alpha PDB ? 8PK "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8PK "Create component" 2017-02-18 EBI 8PK "Initial release" 2017-03-22 RCSB 8PK "Other modification" 2020-07-03 RCSB 8PK "Modify parent residue" 2020-07-17 RCSB 8PK "Modify name" 2020-07-17 RCSB 8PK "Modify synonyms" 2020-07-17 RCSB 8PK "Modify internal type" 2020-07-17 RCSB 8PK "Modify linking type" 2020-07-17 RCSB 8PK "Modify atom id" 2020-07-17 RCSB 8PK "Modify component atom id" 2020-07-17 RCSB 8PK "Modify leaving atom flag" 2020-07-17 RCSB ##