data_8R3 # _chem_comp.id 8R3 _chem_comp.name "3-[2-[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]ethanoylamino]benzoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 Cl N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-08-29 _chem_comp.pdbx_modified_date 2017-11-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 501.963 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8R3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5Y9L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8R3 C1 C1 C 0 1 N N N 18.986 39.582 21.814 -0.739 -0.617 -1.439 C1 8R3 1 8R3 O2 O1 O 0 1 N N N 17.917 39.588 22.464 -0.243 -0.262 -2.488 O2 8R3 2 8R3 O32 O2 O 0 1 N N N 16.527 48.014 23.565 9.064 1.079 1.086 O32 8R3 3 8R3 C31 C2 C 0 1 N N N 17.197 46.962 23.307 8.168 0.184 0.626 C31 8R3 4 8R3 O33 O3 O 0 1 N N N 17.889 46.902 22.243 8.497 -0.973 0.457 O33 8R3 5 8R3 C26 C3 C 0 1 Y N N 17.152 45.796 24.272 6.786 0.610 0.327 C26 8R3 6 8R3 C25 C4 C 0 1 Y N N 17.890 44.631 24.036 5.854 -0.315 -0.143 C25 8R3 7 8R3 C27 C5 C 0 1 Y N N 16.392 45.836 25.453 6.405 1.940 0.521 C27 8R3 8 8R3 C28 C6 C 0 1 Y N N 16.371 44.753 26.328 5.112 2.335 0.242 C28 8R3 9 8R3 C29 C7 C 0 1 Y N N 17.109 43.606 26.062 4.191 1.418 -0.229 C29 8R3 10 8R3 C21 C8 C 0 1 Y N N 17.887 43.524 24.911 4.558 0.092 -0.421 C21 8R3 11 8R3 N20 N1 N 0 1 N N N 18.609 42.326 24.712 3.620 -0.833 -0.893 N20 8R3 12 8R3 C19 C9 C 0 1 N N N 19.451 42.005 23.642 2.320 -0.704 -0.561 C19 8R3 13 8R3 O30 O4 O 0 1 N N N 19.712 42.695 22.647 1.942 0.283 0.034 O30 8R3 14 8R3 C17 C10 C 0 1 N N N 20.112 40.619 23.714 1.338 -1.786 -0.928 C17 8R3 15 8R3 N16 N2 N 0 1 N N N 20.177 40.082 22.352 -0.017 -1.355 -0.576 N16 8R3 16 8R3 C15 C11 C 0 1 N N N 21.472 40.152 21.647 -0.598 -1.725 0.721 C15 8R3 17 8R3 C13 C12 C 0 1 N N N 22.062 38.792 21.249 -1.730 -2.697 0.489 C13 8R3 18 8R3 N14 N3 N 0 1 N N N 23.340 38.624 21.464 -1.557 -3.962 0.688 N14 8R3 19 8R3 N62 N4 N 0 1 N N N 23.800 37.402 21.072 -2.573 -4.869 0.356 N62 8R3 20 8R3 C68 C13 C 0 1 N N N 24.215 36.441 22.109 -3.119 -4.891 -1.003 C68 8R3 21 8R3 C63 C14 C 0 1 N N N 24.766 37.539 19.964 -3.088 -5.793 1.369 C63 8R3 22 8R3 N12 N5 N 0 1 N N N 21.289 37.794 20.715 -2.962 -2.214 0.059 N12 8R3 23 8R3 C11 C15 C 0 1 N N N 19.893 37.730 20.398 -3.054 -1.466 -1.199 C11 8R3 24 8R3 C3 C16 C 0 1 N N R 19.073 39.015 20.387 -2.156 -0.221 -1.111 C3 8R3 25 8R3 C4 C17 C 0 1 N N N 17.703 38.742 19.721 -2.217 0.355 0.305 C4 8R3 26 8R3 C5 C18 C 0 1 Y N N 17.704 38.000 18.396 -3.200 1.497 0.340 C5 8R3 27 8R3 C10 C19 C 0 1 Y N N 17.138 36.699 18.338 -2.778 2.781 0.053 C10 8R3 28 8R3 C6 C20 C 0 1 Y N N 18.255 38.575 17.216 -4.529 1.259 0.656 C6 8R3 29 8R3 O23 O5 O 0 1 N N N 18.780 39.850 17.372 -4.947 -0.004 0.935 O23 8R3 30 8R3 C24 C21 C 0 1 N N N 19.399 40.635 16.339 -6.349 -0.193 1.139 C24 8R3 31 8R3 C7 C22 C 0 1 Y N N 18.211 37.812 16.020 -5.432 2.312 0.688 C7 8R3 32 8R3 C8 C23 C 0 1 Y N N 17.635 36.530 15.980 -5.005 3.595 0.406 C8 8R3 33 8R3 C9 C24 C 0 1 Y N N 17.105 35.964 17.140 -3.680 3.830 0.086 C9 8R3 34 8R3 CL2 CL1 CL 0 0 N N N 16.416 34.371 17.067 -3.145 5.443 -0.269 CL2 8R3 35 8R3 H1 H1 H 0 1 N N N 16.653 48.649 22.870 9.957 0.754 1.267 H1 8R3 36 8R3 H2 H2 H 0 1 N N N 18.491 44.576 23.141 6.142 -1.346 -0.292 H2 8R3 37 8R3 H3 H3 H 0 1 N N N 15.816 46.719 25.686 7.121 2.659 0.889 H3 8R3 38 8R3 H4 H4 H 0 1 N N N 15.773 44.805 27.226 4.819 3.364 0.393 H4 8R3 39 8R3 H5 H5 H 0 1 N N N 17.079 42.775 26.751 3.181 1.733 -0.446 H5 8R3 40 8R3 H6 H6 H 0 1 N N N 18.506 41.626 25.418 3.905 -1.567 -1.460 H6 8R3 41 8R3 H7 H7 H 0 1 N N N 19.513 39.952 24.351 1.391 -1.977 -2.000 H7 8R3 42 8R3 H8 H8 H 0 1 N N N 21.127 40.709 24.129 1.582 -2.698 -0.384 H8 8R3 43 8R3 H9 H9 H 0 1 N N N 22.193 40.659 22.305 0.165 -2.194 1.342 H9 8R3 44 8R3 H10 H10 H 0 1 N N N 21.332 40.745 20.731 -0.976 -0.832 1.220 H10 8R3 45 8R3 H12 H12 H 0 1 N N N 23.447 36.395 22.896 -2.555 -4.204 -1.633 H12 8R3 46 8R3 H13 H13 H 0 1 N N N 24.337 35.445 21.658 -3.044 -5.901 -1.407 H13 8R3 47 8R3 H14 H14 H 0 1 N N N 25.170 36.765 22.548 -4.166 -4.587 -0.979 H14 8R3 48 8R3 H15 H15 H 0 1 N N N 25.124 36.543 19.664 -3.924 -5.330 1.893 H15 8R3 49 8R3 H16 H16 H 0 1 N N N 24.275 38.026 19.108 -3.426 -6.710 0.885 H16 8R3 50 8R3 H17 H17 H 0 1 N N N 25.618 38.151 20.294 -2.298 -6.029 2.082 H17 8R3 51 8R3 H18 H18 H 0 1 N N N 19.427 37.058 21.133 -2.725 -2.098 -2.024 H18 8R3 52 8R3 H19 H19 H 0 1 N N N 19.811 37.288 19.394 -4.087 -1.159 -1.365 H19 8R3 53 8R3 H20 H20 H 0 1 N N N 19.605 39.751 19.766 -2.500 0.527 -1.825 H20 8R3 54 8R3 H21 H21 H 0 1 N N N 17.218 39.715 19.554 -2.538 -0.422 0.999 H21 8R3 55 8R3 H22 H22 H 0 1 N N N 17.104 38.151 20.429 -1.230 0.715 0.594 H22 8R3 56 8R3 H23 H23 H 0 1 N N N 16.723 36.264 19.235 -1.744 2.965 -0.198 H23 8R3 57 8R3 H24 H24 H 0 1 N N N 19.719 41.602 16.755 -6.546 -1.244 1.352 H24 8R3 58 8R3 H25 H25 H 0 1 N N N 20.274 40.098 15.945 -6.679 0.416 1.980 H25 8R3 59 8R3 H26 H26 H 0 1 N N N 18.677 40.806 15.527 -6.890 0.103 0.240 H26 8R3 60 8R3 H27 H27 H 0 1 N N N 18.631 38.227 15.116 -6.468 2.129 0.934 H27 8R3 61 8R3 H28 H28 H 0 1 N N N 17.603 35.982 15.050 -5.708 4.415 0.431 H28 8R3 62 8R3 H30 H30 H 0 1 N N N 21.793 36.955 20.508 -3.758 -2.372 0.590 H30 8R3 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8R3 C8 C7 DOUB Y N 1 8R3 C8 C9 SING Y N 2 8R3 C7 C6 SING Y N 3 8R3 C24 O23 SING N N 4 8R3 CL2 C9 SING N N 5 8R3 C9 C10 DOUB Y N 6 8R3 C6 O23 SING N N 7 8R3 C6 C5 DOUB Y N 8 8R3 C10 C5 SING Y N 9 8R3 C5 C4 SING N N 10 8R3 C4 C3 SING N N 11 8R3 C63 N62 SING N N 12 8R3 C3 C11 SING N N 13 8R3 C3 C1 SING N N 14 8R3 C11 N12 SING N N 15 8R3 N12 C13 SING N N 16 8R3 N62 N14 SING N N 17 8R3 N62 C68 SING N N 18 8R3 C13 N14 DOUB N Z 19 8R3 C13 C15 SING N N 20 8R3 C15 N16 SING N N 21 8R3 C1 N16 SING N N 22 8R3 C1 O2 DOUB N N 23 8R3 O33 C31 DOUB N N 24 8R3 N16 C17 SING N N 25 8R3 O30 C19 DOUB N N 26 8R3 C31 O32 SING N N 27 8R3 C31 C26 SING N N 28 8R3 C19 C17 SING N N 29 8R3 C19 N20 SING N N 30 8R3 C25 C26 DOUB Y N 31 8R3 C25 C21 SING Y N 32 8R3 C26 C27 SING Y N 33 8R3 N20 C21 SING N N 34 8R3 C21 C29 DOUB Y N 35 8R3 C27 C28 DOUB Y N 36 8R3 C29 C28 SING Y N 37 8R3 O32 H1 SING N N 38 8R3 C25 H2 SING N N 39 8R3 C27 H3 SING N N 40 8R3 C28 H4 SING N N 41 8R3 C29 H5 SING N N 42 8R3 N20 H6 SING N N 43 8R3 C17 H7 SING N N 44 8R3 C17 H8 SING N N 45 8R3 C15 H9 SING N N 46 8R3 C15 H10 SING N N 47 8R3 C68 H12 SING N N 48 8R3 C68 H13 SING N N 49 8R3 C68 H14 SING N N 50 8R3 C63 H15 SING N N 51 8R3 C63 H16 SING N N 52 8R3 C63 H17 SING N N 53 8R3 C11 H18 SING N N 54 8R3 C11 H19 SING N N 55 8R3 C3 H20 SING N N 56 8R3 C4 H21 SING N N 57 8R3 C4 H22 SING N N 58 8R3 C10 H23 SING N N 59 8R3 C24 H24 SING N N 60 8R3 C24 H25 SING N N 61 8R3 C24 H26 SING N N 62 8R3 C7 H27 SING N N 63 8R3 C8 H28 SING N N 64 8R3 N12 H30 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8R3 InChI InChI 1.03 "InChI=1S/C24H28ClN5O5/c1-29(2)28-21-13-30(14-22(31)27-19-6-4-5-15(11-19)24(33)34)23(32)17(12-26-21)9-16-10-18(25)7-8-20(16)35-3/h4-8,10-11,17H,9,12-14H2,1-3H3,(H,26,28)(H,27,31)(H,33,34)/t17-/m1/s1" 8R3 InChIKey InChI 1.03 STRUTOBZXDUGAL-QGZVFWFLSA-N 8R3 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(Cl)cc1C[C@@H]2CNC(/CN(CC(=O)Nc3cccc(c3)C(O)=O)C2=O)=N\N(C)C" 8R3 SMILES CACTVS 3.385 "COc1ccc(Cl)cc1C[CH]2CNC(CN(CC(=O)Nc3cccc(c3)C(O)=O)C2=O)=NN(C)C" 8R3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN(C)/N=C\1/CN(C(=O)[C@@H](CN1)Cc2cc(ccc2OC)Cl)CC(=O)Nc3cccc(c3)C(=O)O" 8R3 SMILES "OpenEye OEToolkits" 2.0.6 "CN(C)N=C1CN(C(=O)C(CN1)Cc2cc(ccc2OC)Cl)CC(=O)Nc3cccc(c3)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8R3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "3-[2-[(3~{Z},6~{R})-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-3-(dimethylhydrazinylidene)-7-oxidanylidene-1,4-diazepan-1-yl]ethanoylamino]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8R3 "Create component" 2017-08-29 PDBJ 8R3 "Initial release" 2017-11-29 RCSB #