data_8RX # _chem_comp.id 8RX _chem_comp.name "(3~{R})-3-(pent-4-ynylcarbamoyl)pyrrolidine-1-carboximidothioic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H17 N3 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-14 _chem_comp.pdbx_modified_date 2024-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 239.337 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8RX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PQ0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8RX C10 C1 C 0 1 N N N N N N -17.501 14.119 -4.454 3.039 0.674 0.373 C10 8RX 1 8RX C13 C2 C 0 1 N N N N N N -18.894 17.848 -3.992 6.399 -1.060 0.025 C13 8RX 2 8RX C02 C3 C 0 1 N N N N N N -17.703 14.176 2.135 -3.572 -1.137 0.090 C02 8RX 3 8RX C05 C4 C 0 1 N N N N N N -19.406 13.749 0.261 -2.994 1.264 -0.485 C05 8RX 4 8RX C06 C5 C 0 1 N N N N N N -19.400 12.531 -0.771 -1.683 2.032 -0.182 C06 8RX 5 8RX C07 C6 C 0 1 N N R N N N -18.105 12.211 -1.072 -0.612 1.044 -0.715 C07 8RX 6 8RX C08 C7 C 0 1 N N N N N N -17.465 13.183 -2.110 0.700 1.244 -0.002 C08 8RX 7 8RX C11 C8 C 0 1 N N N N N N -18.469 15.393 -4.294 4.072 -0.313 -0.174 C11 8RX 8 8RX C12 C9 C 0 1 N N N N N N -17.818 16.783 -4.185 5.405 -0.111 0.551 C12 8RX 9 8RX C14 C10 C 0 1 N N N N N N -19.790 18.677 -3.838 7.192 -1.817 -0.395 C14 8RX 10 8RX C16 C11 C 0 1 N N N N N N -17.357 12.456 0.372 -1.217 -0.335 -0.379 C16 8RX 11 8RX N03 N1 N 0 1 N N N N N N -18.483 15.071 2.570 -3.162 -2.358 0.292 N03 8RX 12 8RX N04 N2 N 0 1 N N N N N N -18.058 13.488 0.992 -2.668 -0.152 -0.232 N04 8RX 13 8RX N09 N3 N 0 1 N N N N N N -18.051 13.189 -3.462 1.763 0.480 -0.320 N09 8RX 14 8RX O15 O1 O 0 1 N N N N N N -16.512 13.874 -1.863 0.799 2.092 0.860 O15 8RX 15 8RX H102 H1 H 0 0 N N N N N N -16.458 14.379 -4.222 2.902 0.502 1.441 H102 8RX 16 8RX H101 H2 H 0 0 N N N N N N -17.558 13.699 -5.469 3.389 1.693 0.212 H101 8RX 17 8RX H051 H4 H 0 0 N N N N N N -20.262 13.696 0.950 -3.790 1.595 0.182 H051 8RX 18 8RX H052 H5 H 0 0 N N N N N N -19.410 14.721 -0.254 -3.287 1.406 -1.525 H052 8RX 19 8RX H062 H6 H 0 0 N N N N N N -19.900 11.662 -0.319 -1.649 2.976 -0.726 H062 8RX 20 8RX H061 H7 H 0 0 N N N N N N -19.931 12.822 -1.689 -1.565 2.197 0.889 H061 8RX 21 8RX H071 H8 H 0 0 N N N N N N -17.969 11.165 -1.384 -0.485 1.157 -1.792 H071 8RX 22 8RX H111 H9 H 0 0 N N N N N N -19.134 15.411 -5.170 3.722 -1.333 -0.012 H111 8RX 23 8RX H112 H10 H 0 0 N N N N N N -19.066 15.239 -3.383 4.210 -0.141 -1.241 H112 8RX 24 8RX H122 H11 H 0 0 N N N N N N -17.132 16.798 -3.325 5.267 -0.283 1.618 H122 8RX 25 8RX H121 H12 H 0 0 N N N N N N -17.256 16.996 -5.106 5.755 0.909 0.389 H121 8RX 26 8RX H141 H13 H 0 0 N N N N N N -20.562 19.391 -3.705 7.901 -2.495 -0.770 H141 8RX 27 8RX H161 H14 H 0 0 N N N N N N -17.398 11.543 0.984 -1.012 -1.037 -1.188 H161 8RX 28 8RX H162 H15 H 0 0 N N N N N N -16.307 12.746 0.215 -0.792 -0.709 0.553 H162 8RX 29 8RX H031 H16 H 0 0 N N N N N N -18.155 15.470 3.426 -3.799 -3.053 0.518 H031 8RX 30 8RX H091 H17 H 0 0 N N N N N N -18.804 12.575 -3.697 1.684 -0.199 -1.009 H091 8RX 31 8RX S1 S1 S 0 1 N N N N N N -16.186 13.562 2.797 -5.286 -0.750 0.228 S1 8RX 32 8RX H1 H17 H 0 1 N N N N N N -15.853 12.663 1.919 -5.798 -2.021 0.559 H1 8RX 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8RX N03 C02 DOUB N N 1 8RX N04 C02 SING N N 2 8RX C05 N04 SING N N 3 8RX C06 C05 SING N N 4 8RX C07 C06 SING N N 5 8RX C10 N09 SING N N 6 8RX C11 C10 SING N N 7 8RX C12 C11 SING N N 8 8RX C13 C12 SING N N 9 8RX C14 C13 TRIP N N 10 8RX N09 C08 SING N N 11 8RX O15 C08 DOUB N N 12 8RX C08 C07 SING N N 13 8RX C16 C07 SING N N 14 8RX N04 C16 SING N N 15 8RX C10 H102 SING N N 16 8RX C10 H101 SING N N 17 8RX C05 H051 SING N N 18 8RX C05 H052 SING N N 19 8RX C06 H062 SING N N 20 8RX C06 H061 SING N N 21 8RX C07 H071 SING N N 22 8RX C11 H111 SING N N 23 8RX C11 H112 SING N N 24 8RX C12 H122 SING N N 25 8RX C12 H121 SING N N 26 8RX C14 H141 SING N N 27 8RX C16 H161 SING N N 28 8RX C16 H162 SING N N 29 8RX N03 H031 SING N N 30 8RX N09 H091 SING N N 31 8RX C02 S1 SING N N 32 8RX S1 H1 SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8RX InChI InChI 1.06 "InChI=1S/C11H17N3OS/c1-2-3-4-6-13-10(15)9-5-7-14(8-9)11(12)16/h1,9H,3-8H2,(H2,12,16)(H,13,15)/t9-/m1/s1" 8RX InChIKey InChI 1.06 FDJJUFUKBXRHKT-SECBINFHSA-N 8RX SMILES_CANONICAL CACTVS 3.385 "SC(=N)N1CC[C@H](C1)C(=O)NCCCC#C" 8RX SMILES CACTVS 3.385 "SC(=N)N1CC[CH](C1)C(=O)NCCCC#C" 8RX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N1CC[C@H](C1)C(=O)NCCCC#C)\S" 8RX SMILES "OpenEye OEToolkits" 2.0.7 "C#CCCCNC(=O)C1CCN(C1)C(=N)S" # _pdbx_chem_comp_identifier.comp_id 8RX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R})-3-(pent-4-ynylcarbamoyl)pyrrolidine-1-carboximidothioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8RX "Create component" 2023-07-14 PDBE 8RX "Initial release" 2024-01-31 RCSB #