data_8SU # _chem_comp.id 8SU _chem_comp.name "(~{Z})-7-[(1~{R},5~{S})-2-oxidanylidene-5-[(~{E},3~{S})-3-oxidanyloct-1-enyl]cyclopent-3-en-1-yl]hept-5-enoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PROSTAGLANDIN A2 (PGA2)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8SU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5YD6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8SU O9 O1 O 0 1 N N N N N N -3.906 -19.484 20.223 -1.730 -4.554 0.384 O9 8SU 1 8SU C9 C1 C 0 1 N N N N N N -3.643 -19.292 19.045 -0.908 -3.831 -0.140 C9 8SU 2 8SU C10 C2 C 0 1 N N N N N N -4.527 -18.597 18.107 0.100 -4.236 -1.115 C10 8SU 3 8SU C11 C3 C 0 1 N N N N N N -4.139 -18.922 16.876 0.856 -3.221 -1.507 C11 8SU 4 8SU C12 C4 C 0 1 N N S N N N -2.754 -19.547 16.886 0.433 -1.949 -0.816 C12 8SU 5 8SU C13 C5 C 0 1 N N N N N N -2.899 -20.846 16.151 1.570 -1.400 0.007 C13 8SU 6 8SU C14 C6 C 0 1 N N N N N N -1.973 -21.560 15.540 2.026 -0.194 -0.227 C14 8SU 7 8SU C15 C7 C 0 1 N N S N N N -2.563 -22.787 14.896 3.162 0.354 0.596 C15 8SU 8 8SU C16 C8 C 0 1 N N N N N N -1.594 -23.962 14.960 4.293 0.803 -0.332 C16 8SU 9 8SU C17 C9 C 0 1 N N N N N N -2.210 -25.248 14.420 5.394 1.473 0.493 C17 8SU 10 8SU C18 C10 C 0 1 N N N N N N -3.105 -25.906 15.465 6.525 1.921 -0.435 C18 8SU 11 8SU C19 C11 C 0 1 N N N N N N -3.395 -27.370 15.174 7.626 2.592 0.390 C19 8SU 12 8SU C20 C12 C 0 1 N N N N N N -4.612 -27.556 14.305 8.757 3.040 -0.538 C20 8SU 13 8SU O15 O2 O 0 1 N N N N N N -2.908 -22.459 13.536 3.645 -0.660 1.479 O15 8SU 14 8SU C8 C13 C 0 1 N N R N N N -2.406 -19.763 18.359 -0.745 -2.344 0.092 C8 8SU 15 8SU C7 C14 C 0 1 N N N N N N -1.246 -18.877 18.792 -2.012 -1.589 -0.315 C7 8SU 16 8SU C6 C15 C 0 1 N N N N N N -0.132 -19.696 19.415 -3.117 -1.899 0.662 C6 8SU 17 8SU C5 C16 C 0 1 N N N N N N 1.141 -19.274 19.476 -3.773 -0.924 1.241 C5 8SU 18 8SU C4 C17 C 0 1 N N N N N N 1.619 -17.933 18.943 -3.541 0.501 0.808 C4 8SU 19 8SU C3 C18 C 0 1 N N N N N N 2.153 -18.074 17.520 -4.880 1.149 0.449 C3 8SU 20 8SU C2 C19 C 0 1 N N N N N N 2.688 -16.739 16.999 -4.644 2.595 0.010 C2 8SU 21 8SU C1 C20 C 0 1 N N N N N N 4.198 -16.759 16.859 -5.963 3.234 -0.344 C1 8SU 22 8SU O1 O3 O 0 1 N N N N N N 4.844 -15.783 17.306 -6.001 4.510 -0.759 O1 8SU 23 8SU O2 O4 O 0 1 N N N N N N 4.750 -17.736 16.296 -6.986 2.597 -0.253 O2 8SU 24 8SU H1 H1 H 0 1 N N N N N N -5.344 -17.941 18.367 0.217 -5.248 -1.474 H1 8SU 25 8SU H3 H3 H 0 1 N N N N N N -4.731 -18.762 15.987 1.664 -3.295 -2.219 H3 8SU 26 8SU H5 H5 H 0 1 N N N N N N -2.019 -18.890 16.399 0.108 -1.211 -1.549 H5 8SU 27 8SU H6 H6 H 0 1 N N N N N N -3.899 -21.253 16.117 2.009 -2.001 0.790 H6 8SU 28 8SU H8 H8 H 0 1 N N N N N N -0.926 -21.298 15.506 1.586 0.407 -1.009 H8 8SU 29 8SU H10 H10 H 0 1 N N N N N N -3.475 -23.064 15.446 2.811 1.206 1.179 H10 8SU 30 8SU H11 H11 H 0 1 N N N N N N -1.301 -24.123 16.008 4.704 -0.064 -0.849 H11 8SU 31 8SU H12 H12 H 0 1 N N N N N N -0.703 -23.719 14.363 3.905 1.511 -1.063 H12 8SU 32 8SU H13 H13 H 0 1 N N N N N N -2.810 -25.013 13.529 4.984 2.340 1.010 H13 8SU 33 8SU H14 H14 H 0 1 N N N N N N -1.405 -25.945 14.146 5.783 0.764 1.224 H14 8SU 34 8SU H15 H15 H 0 1 N N N N N N -2.608 -25.837 16.444 6.936 1.054 -0.952 H15 8SU 35 8SU H16 H16 H 0 1 N N N N N N -4.060 -25.361 15.499 6.136 2.630 -1.166 H16 8SU 36 8SU H17 H17 H 0 1 N N N N N N -3.559 -27.893 16.128 7.215 3.459 0.907 H17 8SU 37 8SU H18 H18 H 0 1 N N N N N N -2.525 -27.807 14.661 8.015 1.883 1.121 H18 8SU 38 8SU H19 H19 H 0 1 N N N N N N -4.775 -28.629 14.127 9.168 2.173 -1.055 H19 8SU 39 8SU H20 H20 H 0 1 N N N N N N -5.492 -27.131 14.810 8.368 3.749 -1.269 H20 8SU 40 8SU H21 H21 H 0 1 N N N N N N -4.458 -27.044 13.344 9.541 3.517 0.050 H21 8SU 41 8SU H22 H22 H 0 1 N N N N N N -3.511 -21.725 13.530 3.974 -1.450 1.028 H22 8SU 42 8SU H23 H23 H 0 1 N N N N N N -2.200 -20.823 18.569 -0.504 -2.149 1.137 H23 8SU 43 8SU H24 H24 H 0 1 N N N N N N -0.852 -18.346 17.913 -1.813 -0.517 -0.310 H24 8SU 44 8SU H25 H25 H 0 1 N N N N N N -1.609 -18.146 19.529 -2.314 -1.898 -1.315 H25 8SU 45 8SU H26 H26 H 0 1 N N N N N N -0.374 -20.664 19.829 -3.368 -2.926 0.885 H26 8SU 46 8SU H27 H27 H 0 1 N N N N N N 1.870 -19.927 19.932 -4.480 -1.141 2.028 H27 8SU 47 8SU H28 H28 H 0 1 N N N N N N 2.421 -17.552 19.593 -3.075 1.056 1.621 H28 8SU 48 8SU H29 H29 H 0 1 N N N N N N 0.778 -17.224 18.944 -2.886 0.514 -0.063 H29 8SU 49 8SU H30 H30 H 0 1 N N N N N N 1.340 -18.416 16.863 -5.346 0.593 -0.364 H30 8SU 50 8SU H31 H31 H 0 1 N N N N N N 2.966 -18.815 17.513 -5.535 1.136 1.320 H31 8SU 51 8SU H32 H32 H 0 1 N N N N N N 2.405 -15.942 17.703 -4.178 3.151 0.823 H32 8SU 52 8SU H33 H33 H 0 1 N N N N N N 2.241 -16.535 16.015 -3.989 2.609 -0.862 H33 8SU 53 8SU H34 H34 H 0 1 N N N N N N 5.771 -15.917 17.147 -6.870 4.876 -0.974 H34 8SU 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8SU O15 C15 SING N N 1 8SU C20 C19 SING N N 2 8SU C17 C16 SING N N 3 8SU C17 C18 SING N N 4 8SU C15 C16 SING N N 5 8SU C15 C14 SING N N 6 8SU C19 C18 SING N N 7 8SU C14 C13 DOUB N E 8 8SU C13 C12 SING N N 9 8SU O2 C1 DOUB N N 10 8SU C1 C2 SING N N 11 8SU C1 O1 SING N N 12 8SU C11 C12 SING N N 13 8SU C11 C10 DOUB N N 14 8SU C12 C8 SING N N 15 8SU C2 C3 SING N N 16 8SU C3 C4 SING N N 17 8SU C10 C9 SING N N 18 8SU C8 C7 SING N N 19 8SU C8 C9 SING N N 20 8SU C7 C6 SING N N 21 8SU C4 C5 SING N N 22 8SU C9 O9 DOUB N N 23 8SU C6 C5 DOUB N Z 24 8SU C10 H1 SING N N 25 8SU C11 H3 SING N N 26 8SU C12 H5 SING N N 27 8SU C13 H6 SING N N 28 8SU C14 H8 SING N N 29 8SU C15 H10 SING N N 30 8SU C16 H11 SING N N 31 8SU C16 H12 SING N N 32 8SU C17 H13 SING N N 33 8SU C17 H14 SING N N 34 8SU C18 H15 SING N N 35 8SU C18 H16 SING N N 36 8SU C19 H17 SING N N 37 8SU C19 H18 SING N N 38 8SU C20 H19 SING N N 39 8SU C20 H20 SING N N 40 8SU C20 H21 SING N N 41 8SU O15 H22 SING N N 42 8SU C8 H23 SING N N 43 8SU C7 H24 SING N N 44 8SU C7 H25 SING N N 45 8SU C6 H26 SING N N 46 8SU C5 H27 SING N N 47 8SU C4 H28 SING N N 48 8SU C4 H29 SING N N 49 8SU C3 H30 SING N N 50 8SU C3 H31 SING N N 51 8SU C2 H32 SING N N 52 8SU C2 H33 SING N N 53 8SU O1 H34 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8SU InChI InChI 1.03 "InChI=1S/C20H30O4/c1-2-3-6-9-17(21)14-12-16-13-15-19(22)18(16)10-7-4-5-8-11-20(23)24/h4,7,12-18,21H,2-3,5-6,8-11H2,1H3,(H,23,24)/b7-4-,14-12+/t16-,17-,18+/m0/s1" 8SU InChIKey InChI 1.03 MYHXHCUNDDAEOZ-FOSBLDSVSA-N 8SU SMILES_CANONICAL CACTVS 3.385 "CCCCC[C@H](O)\C=C\[C@H]1C=CC(=O)[C@@H]1C\C=C/CCCC(O)=O" 8SU SMILES CACTVS 3.385 "CCCCC[CH](O)C=C[CH]1C=CC(=O)[CH]1CC=CCCCC(O)=O" 8SU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCC[C@@H](/C=C/[C@H]1C=CC(=O)[C@@H]1C/C=C\CCCC(=O)O)O" 8SU SMILES "OpenEye OEToolkits" 2.0.6 "CCCCCC(C=CC1C=CC(=O)C1CC=CCCCC(=O)O)O" # _pdbx_chem_comp_identifier.comp_id 8SU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(~{Z})-7-[(1~{R},5~{S})-2-oxidanylidene-5-[(~{E},3~{S})-3-oxidanyloct-1-enyl]cyclopent-3-en-1-yl]hept-5-enoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8SU "Create component" 2017-09-12 PDBJ 8SU "Modify synonyms" 2017-09-13 PDBJ 8SU "Initial release" 2019-03-27 RCSB 8SU "Modify synonyms" 2021-03-01 PDBE 8SU "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8SU _pdbx_chem_comp_synonyms.name "PROSTAGLANDIN A2 (PGA2)" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 8SU _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C11 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #