data_8TF # _chem_comp.id 8TF _chem_comp.name "2,4-bis[(E)-(1-ethyl-3,3-dimethyl-indol-2-ylidene)methyl]cyclobutane-1,3-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H34 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Dye with squaraine-scaffold" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-29 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 454.603 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8TF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Q34 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8TF CAC C1 C 0 1 N N N 16.743 -4.474 29.089 3.083 3.323 -0.393 CAC 8TF 1 8TF CAD C2 C 0 1 N N N 15.605 -3.432 29.143 3.463 2.517 0.851 CAD 8TF 2 8TF NAA N1 N 0 1 N N N 15.942 -1.896 28.722 3.961 1.200 0.446 NAA 8TF 3 8TF CAE C3 C 0 1 Y N N 14.881 -1.001 28.681 5.299 0.916 0.176 CAE 8TF 4 8TF CAJ C4 C 0 1 Y N N 13.545 -1.169 28.876 6.424 1.740 0.216 CAJ 8TF 5 8TF CAI C5 C 0 1 Y N N 12.621 -0.116 28.724 7.667 1.230 -0.097 CAI 8TF 6 8TF CAH C6 C 0 1 Y N N 13.065 1.143 28.331 7.808 -0.099 -0.452 CAH 8TF 7 8TF CAG C7 C 0 1 Y N N 14.430 1.291 28.111 6.696 -0.922 -0.493 CAG 8TF 8 8TF CAF C8 C 0 1 Y N N 15.285 0.235 28.251 5.453 -0.417 -0.182 CAF 8TF 9 8TF CAK C9 C 0 1 N N N 16.683 0.177 28.101 4.081 -1.049 -0.136 CAK 8TF 10 8TF CAL C10 C 0 1 N N N 17.247 1.012 26.947 3.688 -1.573 -1.519 CAL 8TF 11 8TF CAM C11 C 0 1 N N N 17.197 0.939 29.267 4.048 -2.181 0.893 CAM 8TF 12 8TF CAN C12 C 0 1 N N N 17.052 -1.236 28.235 3.163 0.077 0.289 CAN 8TF 13 8TF CAO C13 C 0 1 N N N 18.261 -1.888 28.163 1.858 0.005 0.473 CAO 8TF 14 8TF CAP C14 C 0 1 N N N 19.538 -1.466 27.716 1.118 -1.264 0.134 CAP 8TF 15 8TF CBF C15 C 0 1 N N N 20.668 -2.278 27.627 0.079 -1.088 -0.954 CBF 8TF 16 8TF OBH O1 O 0 1 N N N 20.843 -3.467 27.886 0.048 -1.178 -2.158 OBH 8TF 17 8TF CAQ C16 C 0 1 N N N 20.335 -0.373 27.257 -0.029 -1.567 1.074 CAQ 8TF 18 8TF OBG O2 O 0 1 N N N 20.208 0.845 27.008 -0.179 -2.183 2.102 OBG 8TF 19 8TF CAR C17 C 0 1 N N N 21.451 -1.221 27.156 -0.904 -0.750 0.147 CAR 8TF 20 8TF CAS C18 C 0 1 N N N 22.756 -0.952 26.723 -2.275 -1.339 -0.065 CAS 8TF 21 8TF CAT C19 C 0 1 N N N 23.799 -1.813 26.685 -3.336 -0.554 -0.082 CAT 8TF 22 8TF CBC C20 C 0 1 N N N 23.852 -3.179 27.016 -3.360 0.940 0.156 CBC 8TF 23 8TF CBD C21 C 0 1 N N N 23.592 -3.393 28.512 -2.850 1.267 1.561 CBD 8TF 24 8TF CBE C22 C 0 1 N N N 22.926 -4.042 26.134 -2.518 1.663 -0.898 CBE 8TF 25 8TF CAX C23 C 0 1 Y N N 25.158 -3.545 26.779 -4.817 1.318 0.021 CAX 8TF 26 8TF CAY C24 C 0 1 Y N N 25.746 -4.736 26.941 -5.476 2.524 0.127 CAY 8TF 27 8TF CAZ C25 C 0 1 Y N N 27.102 -4.893 26.640 -6.847 2.580 -0.048 CAZ 8TF 28 8TF CBA C26 C 0 1 Y N N 27.829 -3.795 26.178 -7.553 1.425 -0.329 CBA 8TF 29 8TF CBB C27 C 0 1 Y N N 27.163 -2.581 26.035 -6.898 0.216 -0.435 CBB 8TF 30 8TF CAW C28 C 0 1 Y N N 25.849 -2.475 26.338 -5.516 0.151 -0.260 CAW 8TF 31 8TF NAB N2 N 0 1 N N N 25.026 -1.418 26.280 -4.647 -0.937 -0.325 NAB 8TF 32 8TF CAU C29 C 0 1 N N N 25.551 -0.027 25.876 -5.066 -2.312 -0.610 CAU 8TF 33 8TF CAV C30 C 0 1 N N N 26.184 -0.010 24.469 -5.406 -3.023 0.701 CAV 8TF 34 8TF H1 H1 H 0 1 N N N 16.357 -5.456 29.401 2.306 2.794 -0.945 H1 8TF 35 8TF H2 H2 H 0 1 N N N 17.130 -4.541 28.061 2.712 4.302 -0.092 H2 8TF 36 8TF H3 H3 H 0 1 N N N 17.553 -4.167 29.766 3.960 3.446 -1.028 H3 8TF 37 8TF H4 H4 H 0 1 N N N 14.808 -3.786 28.472 4.240 3.046 1.403 H4 8TF 38 8TF H5 H5 H 0 1 N N N 15.232 -3.411 30.177 2.586 2.394 1.486 H5 8TF 39 8TF H6 H6 H 0 1 N N N 13.179 -2.145 29.158 6.322 2.779 0.492 H6 8TF 40 8TF H7 H7 H 0 1 N N N 11.571 -0.286 28.912 8.535 1.872 -0.064 H7 8TF 41 8TF H8 H8 H 0 1 N N N 12.380 1.968 28.203 8.783 -0.493 -0.697 H8 8TF 42 8TF H9 H9 H 0 1 N N N 14.820 2.256 27.825 6.804 -1.960 -0.771 H9 8TF 43 8TF H10 H10 H 0 1 N N N 18.341 0.901 26.914 4.397 -2.339 -1.833 H10 8TF 44 8TF H11 H11 H 0 1 N N N 16.814 0.665 25.997 2.686 -2.002 -1.474 H11 8TF 45 8TF H12 H12 H 0 1 N N N 16.991 2.071 27.101 3.699 -0.752 -2.236 H12 8TF 46 8TF H13 H13 H 0 1 N N N 18.297 0.952 29.241 4.363 -1.799 1.863 H13 8TF 47 8TF H14 H14 H 0 1 N N N 16.817 1.970 29.227 3.033 -2.573 0.968 H14 8TF 48 8TF H15 H15 H 0 1 N N N 16.858 0.459 30.197 4.723 -2.977 0.579 H15 8TF 49 8TF H16 H16 H 0 1 N N N 18.232 -2.910 28.511 1.320 0.855 0.866 H16 8TF 50 8TF H17 H17 H 0 1 N N N 19.267 -1.715 26.679 1.784 -2.111 -0.032 H17 8TF 51 8TF H18 H18 H 0 1 N N N 21.739 -0.970 28.188 -0.933 0.311 0.396 H18 8TF 52 8TF H19 H19 H 0 1 N N N 22.951 0.054 26.382 -2.389 -2.405 -0.204 H19 8TF 53 8TF H20 H20 H 0 1 N N N 23.639 -4.467 28.743 -1.796 1.000 1.637 H20 8TF 54 8TF H21 H21 H 0 1 N N N 24.355 -2.859 29.097 -2.970 2.333 1.752 H21 8TF 55 8TF H22 H22 H 0 1 N N N 22.595 -3.006 28.770 -3.423 0.700 2.296 H22 8TF 56 8TF H23 H23 H 0 1 N N N 23.008 -5.096 26.437 -2.920 1.455 -1.890 H23 8TF 57 8TF H24 H24 H 0 1 N N N 21.886 -3.706 26.256 -2.546 2.736 -0.712 H24 8TF 58 8TF H25 H25 H 0 1 N N N 23.223 -3.939 25.080 -1.487 1.311 -0.843 H25 8TF 59 8TF H26 H26 H 0 1 N N N 25.173 -5.576 27.304 -4.921 3.424 0.346 H26 8TF 60 8TF H27 H27 H 0 1 N N N 27.581 -5.853 26.764 -7.365 3.525 0.034 H27 8TF 61 8TF H28 H28 H 0 1 N N N 28.878 -3.885 25.938 -8.624 1.470 -0.465 H28 8TF 62 8TF H29 H29 H 0 1 N N N 27.701 -1.715 25.679 -7.456 -0.682 -0.654 H29 8TF 63 8TF H30 H30 H 0 1 N N N 24.711 0.683 25.892 -5.945 -2.297 -1.254 H30 8TF 64 8TF H31 H31 H 0 1 N N N 26.311 0.287 26.607 -4.256 -2.842 -1.112 H31 8TF 65 8TF H32 H32 H 0 1 N N N 26.539 1.005 24.238 -5.717 -4.046 0.489 H32 8TF 66 8TF H33 H33 H 0 1 N N N 27.032 -0.710 24.440 -4.526 -3.038 1.345 H33 8TF 67 8TF H34 H34 H 0 1 N N N 25.433 -0.314 23.725 -6.215 -2.493 1.203 H34 8TF 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8TF CAC CAD SING N N 1 8TF CAD NAA SING N N 2 8TF NAA CAE SING N N 3 8TF NAA CAN SING N N 4 8TF CAE CAJ DOUB Y N 5 8TF CAE CAF SING Y N 6 8TF CAJ CAI SING Y N 7 8TF CAI CAH DOUB Y N 8 8TF CAH CAG SING Y N 9 8TF CAG CAF DOUB Y N 10 8TF CAF CAK SING N N 11 8TF CAK CAL SING N N 12 8TF CAK CAM SING N N 13 8TF CAK CAN SING N N 14 8TF CAN CAO DOUB N E 15 8TF CAO CAP SING N N 16 8TF CAP CBF SING N N 17 8TF CAP CAQ SING N N 18 8TF CBF OBH DOUB N N 19 8TF CBF CAR SING N N 20 8TF CAQ OBG DOUB N N 21 8TF CAQ CAR SING N N 22 8TF CAR CAS SING N N 23 8TF CAS CAT DOUB N E 24 8TF CAT CBC SING N N 25 8TF CAT NAB SING N N 26 8TF CBC CBD SING N N 27 8TF CBC CBE SING N N 28 8TF CBC CAX SING N N 29 8TF CAX CAY DOUB Y N 30 8TF CAX CAW SING Y N 31 8TF CAY CAZ SING Y N 32 8TF CAZ CBA DOUB Y N 33 8TF CBA CBB SING Y N 34 8TF CBB CAW DOUB Y N 35 8TF CAW NAB SING N N 36 8TF NAB CAU SING N N 37 8TF CAU CAV SING N N 38 8TF CAC H1 SING N N 39 8TF CAC H2 SING N N 40 8TF CAC H3 SING N N 41 8TF CAD H4 SING N N 42 8TF CAD H5 SING N N 43 8TF CAJ H6 SING N N 44 8TF CAI H7 SING N N 45 8TF CAH H8 SING N N 46 8TF CAG H9 SING N N 47 8TF CAL H10 SING N N 48 8TF CAL H11 SING N N 49 8TF CAL H12 SING N N 50 8TF CAM H13 SING N N 51 8TF CAM H14 SING N N 52 8TF CAM H15 SING N N 53 8TF CAO H16 SING N N 54 8TF CAP H17 SING N N 55 8TF CAR H18 SING N N 56 8TF CAS H19 SING N N 57 8TF CBD H20 SING N N 58 8TF CBD H21 SING N N 59 8TF CBD H22 SING N N 60 8TF CBE H23 SING N N 61 8TF CBE H24 SING N N 62 8TF CBE H25 SING N N 63 8TF CAY H26 SING N N 64 8TF CAZ H27 SING N N 65 8TF CBA H28 SING N N 66 8TF CBB H29 SING N N 67 8TF CAU H30 SING N N 68 8TF CAU H31 SING N N 69 8TF CAV H32 SING N N 70 8TF CAV H33 SING N N 71 8TF CAV H34 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8TF InChI InChI 1.06 "InChI=1S/C30H34N2O2/c1-7-31-23-15-11-9-13-21(23)29(3,4)25(31)17-19-27(33)20(28(19)34)18-26-30(5,6)22-14-10-12-16-24(22)32(26)8-2/h9-20H,7-8H2,1-6H3/b25-17+,26-18+/t19-,20-" 8TF InChIKey InChI 1.06 RFXRJJSGFNDERY-FAKNRSBRSA-N 8TF SMILES_CANONICAL CACTVS 3.385 "CCN\1c2ccccc2C(C)(C)C\1=C\[C@@H]3C(=O)[C@@H](\C=C/4N(CC)c5ccccc5C/4(C)C)C3=O" 8TF SMILES CACTVS 3.385 "CCN1c2ccccc2C(C)(C)C1=C[CH]3C(=O)[CH](C=C4N(CC)c5ccccc5C4(C)C)C3=O" 8TF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1/C(=C/C2C(=O)C(C2=O)/C=C\3/N(c4c(cccc4)C3(C)C)CC)/C(c5c1cccc5)(C)C" 8TF SMILES "OpenEye OEToolkits" 2.0.7 "CCN1c2ccccc2C(C1=CC3C(=O)C(C3=O)C=C4C(c5ccccc5N4CC)(C)C)(C)C" # _pdbx_chem_comp_identifier.comp_id 8TF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2,4-bis[(~{E})-(1-ethyl-3,3-dimethyl-indol-2-ylidene)methyl]cyclobutane-1,3-dione" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8TF _pdbx_chem_comp_synonyms.name "Dye with squaraine-scaffold" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8TF "Create component" 2021-10-29 PDBE 8TF "Initial release" 2022-06-01 RCSB 8TF "Modify descriptor" 2022-08-22 RCSB #