data_8V2 # _chem_comp.id 8V2 _chem_comp.name ;methyl (3~{S},7~{R},10~{R},13~{R})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylid ene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3, 7}]tridec-8-ene-13-carboxylate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H42 Cl N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Ac-[2-Cl-F]-[ProM-2]-[ProM-12]-OMe _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-03-10 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 692.201 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8V2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5NDU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8V2 O2 O1 O 0 1 N N N -2.184 -12.950 26.539 6.054 -3.828 1.096 O2 8V2 1 8V2 C7 C1 C 0 1 N N N -4.803 -9.406 21.783 6.276 1.744 -2.590 C7 8V2 2 8V2 O3 O2 O 0 1 N N N -8.123 -5.802 26.732 -0.566 -0.022 0.144 O3 8V2 3 8V2 C16 C2 C 0 1 Y N N -11.987 -0.157 25.571 -6.592 -0.320 -2.629 C16 8V2 4 8V2 C19 C3 C 0 1 Y N N -14.517 -1.396 25.797 -7.667 -2.683 -1.676 C19 8V2 5 8V2 O5 O3 O 0 1 N N N -12.713 -1.167 29.476 -4.228 2.292 -1.293 O5 8V2 6 8V2 C22 C4 C 0 1 N N N -4.729 -6.272 23.561 3.081 3.231 -1.324 C22 8V2 7 8V2 C1 C5 C 0 1 N N N -3.389 -12.455 26.090 5.714 -2.847 0.245 C1 8V2 8 8V2 C10 C6 C 0 1 N N S -5.473 -5.696 26.330 1.095 2.256 0.675 C10 8V2 9 8V2 C11 C7 C 0 1 N N N -9.319 -3.130 28.085 -3.645 0.643 0.913 C11 8V2 10 8V2 C12 C8 C 0 1 N N S -10.658 -2.410 27.863 -4.945 0.222 0.277 C12 8V2 11 8V2 C13 C9 C 0 1 N N N -10.929 -2.176 26.343 -4.658 -0.487 -1.048 C13 8V2 12 8V2 C14 C10 C 0 1 Y N N -12.080 -1.486 26.076 -5.946 -1.016 -1.624 C14 8V2 13 8V2 C15 C11 C 0 1 Y N N -13.340 -2.040 26.118 -6.484 -2.199 -1.147 C15 8V2 14 8V2 C17 C12 C 0 1 Y N N -13.184 0.521 25.289 -7.777 -0.802 -3.153 C17 8V2 15 8V2 C18 C13 C 0 1 Y N N -14.415 -0.070 25.352 -8.316 -1.981 -2.674 C18 8V2 16 8V2 C2 C14 C 0 1 N N R -3.336 -11.993 24.741 6.433 -1.524 0.295 C2 8V2 17 8V2 C20 C15 C 0 1 N N N -5.490 -7.050 25.856 2.127 1.348 0.055 C20 8V2 18 8V2 C21 C16 C 0 1 N N S -5.091 -8.612 24.024 4.190 1.137 -1.349 C21 8V2 19 8V2 C23 C17 C 0 1 N N N -5.092 -7.045 22.348 4.351 3.351 -2.205 C23 8V2 20 8V2 C24 C18 C 0 1 N N N -4.237 -4.204 27.767 0.839 3.466 2.758 C24 8V2 21 8V2 C25 C19 C 0 1 N N N -4.200 -9.589 24.643 4.699 -0.011 -0.606 C25 8V2 22 8V2 C26 C20 C 0 1 N N N -7.279 -4.291 29.750 -1.818 1.037 3.342 C26 8V2 23 8V2 C27 C21 C 0 1 N N S -5.218 -4.992 28.664 0.399 1.995 2.946 C27 8V2 24 8V2 C28 C22 C 0 1 N N N -5.895 -4.217 29.591 -0.920 1.926 3.658 C28 8V2 25 8V2 C29 C23 C 0 1 N N N -9.938 -6.040 30.184 -1.891 -2.379 2.047 C29 8V2 26 8V2 C3 C24 C 0 1 N N N -3.698 -13.030 23.706 7.924 -1.731 -0.006 C3 8V2 27 8V2 C30 C25 C 0 1 N N N -10.498 -4.962 29.255 -3.247 -1.676 1.791 C30 8V2 28 8V2 C31 C26 C 0 1 N N N -7.486 -5.447 27.705 -0.617 0.489 1.243 C31 8V2 29 8V2 C32 C27 C 0 1 N N N -11.586 -0.670 29.395 -5.320 2.387 -0.775 C32 8V2 30 8V2 C33 C28 C 0 1 N N N -11.300 0.646 30.142 -6.172 3.604 -1.031 C33 8V2 31 8V2 C34 C29 C 0 1 N N N -8.706 -6.384 29.560 -1.137 -1.307 2.880 C34 8V2 32 8V2 C35 C30 C 0 1 N N R -8.114 -5.081 28.913 -1.624 0.018 2.259 C35 8V2 33 8V2 C4 C31 C 0 1 N N N -5.203 -12.888 23.613 8.215 -0.837 -1.227 C4 8V2 34 8V2 C5 C32 C 0 1 N N R -5.313 -11.340 23.403 6.816 -0.606 -1.857 C5 8V2 35 8V2 C6 C33 C 0 1 N N N -5.164 -10.726 22.091 6.875 0.636 -2.661 C6 8V2 36 8V2 C8 C34 C 0 1 N N R -4.463 -8.364 22.644 5.230 2.203 -1.669 C8 8V2 37 8V2 C87 C35 C 0 1 N N N -2.320 -14.326 26.925 5.319 -5.076 0.991 C87 8V2 38 8V2 C9 C36 C 0 1 N N N -4.054 -5.286 26.719 1.792 3.335 1.536 C9 8V2 39 8V2 N1 N1 N 0 1 N N N -4.261 -10.879 24.377 5.881 -0.615 -0.735 N1 8V2 40 8V2 N2 N2 N 0 1 N N N -5.145 -7.306 24.622 3.047 1.853 -0.791 N2 8V2 41 8V2 N3 N3 N 0 1 N N N -6.162 -5.486 27.598 0.227 1.486 1.571 N3 8V2 42 8V2 N4 N4 N 0 1 N N N -10.585 -1.098 28.602 -5.773 1.405 0.028 N4 8V2 43 8V2 N5 N5 N 0 1 N N N -9.343 -4.324 28.776 -2.905 -0.256 1.592 N5 8V2 44 8V2 O1 O4 O 0 1 N N N -4.363 -12.257 26.842 4.832 -3.025 -0.561 O1 8V2 45 8V2 O4 O5 O 0 1 N N N -8.260 -2.763 27.532 -3.265 1.790 0.813 O4 8V2 46 8V2 O6 O6 O 0 1 N N N -5.841 -7.993 26.599 2.130 0.164 0.318 O6 8V2 47 8V2 O7 O7 O 0 1 N N N -3.319 -9.225 25.472 3.956 -0.472 0.234 O7 8V2 48 8V2 CL CL1 CL 0 0 N N N -13.569 -3.676 26.661 -5.674 -3.074 0.115 CL 8V2 49 8V2 H7 H1 H 0 1 N N N -4.786 -9.163 20.731 6.585 2.474 -3.324 H7 8V2 50 8V2 H16 H2 H 0 1 N N N -11.028 0.313 25.410 -6.173 0.603 -3.001 H16 8V2 51 8V2 H19 H3 H 0 1 N N N -15.473 -1.890 25.884 -8.086 -3.606 -1.304 H19 8V2 52 8V2 H93 H4 H 0 1 N N N -3.653 -6.046 23.602 3.131 3.946 -0.503 H93 8V2 53 8V2 H22 H5 H 0 1 N N N -5.304 -5.338 23.645 2.190 3.419 -1.925 H22 8V2 54 8V2 H10 H6 H 0 1 N N N -5.858 -5.008 25.563 0.498 2.730 -0.104 H10 8V2 55 8V2 H12 H7 H 0 1 N N N -11.471 -3.023 28.279 -5.473 -0.458 0.945 H12 8V2 56 8V2 H13 H8 H 0 1 N N N -10.993 -3.157 25.849 -4.210 0.218 -1.748 H13 8V2 57 8V2 H36 H9 H 0 1 N N N -10.083 -1.610 25.925 -3.970 -1.315 -0.876 H36 8V2 58 8V2 H17 H10 H 0 1 N N N -13.129 1.562 25.008 -8.285 -0.254 -3.932 H17 8V2 59 8V2 H18 H11 H 0 1 N N N -15.299 0.478 25.062 -9.242 -2.357 -3.084 H18 8V2 60 8V2 H25 H12 H 0 1 N N N -2.310 -11.658 24.527 6.315 -1.077 1.282 H25 8V2 61 8V2 H21 H13 H 0 1 N N N -6.100 -9.031 23.900 3.860 0.745 -2.310 H21 8V2 62 8V2 H94 H14 H 0 1 N N N -4.669 -6.592 21.440 4.110 3.196 -3.257 H94 8V2 63 8V2 H23 H15 H 0 1 N N N -6.183 -7.134 22.239 4.837 4.315 -2.055 H23 8V2 64 8V2 H4B H16 H 0 1 N N N -3.299 -3.954 28.284 -0.013 4.104 2.525 H4B 8V2 65 8V2 H24 H17 H 0 1 N N N -4.684 -3.287 27.355 1.372 3.831 3.636 H24 8V2 66 8V2 H26 H18 H 0 1 N N N -7.737 -3.722 30.545 -2.750 1.034 3.888 H26 8V2 67 8V2 H27 H19 H 0 1 N N N -4.695 -5.839 29.133 1.159 1.430 3.485 H27 8V2 68 8V2 H28 H20 H 0 1 N N N -5.333 -3.533 30.211 -1.130 2.628 4.451 H28 8V2 69 8V2 H38 H21 H 0 1 N N N -9.772 -5.644 31.197 -2.028 -3.295 2.622 H38 8V2 70 8V2 H29 H22 H 0 1 N N N -10.612 -6.908 30.236 -1.373 -2.582 1.110 H29 8V2 71 8V2 H31 H23 H 0 1 N N N -3.414 -14.039 24.038 8.529 -1.419 0.845 H31 8V2 72 8V2 H32 H24 H 0 1 N N N -3.218 -12.813 22.741 8.120 -2.776 -0.246 H32 8V2 73 8V2 H30 H25 H 0 1 N N N -11.138 -4.258 29.807 -3.721 -2.081 0.897 H30 8V2 74 8V2 H37 H26 H 0 1 N N N -11.072 -5.410 28.431 -3.904 -1.793 2.653 H37 8V2 75 8V2 H35 H27 H 0 1 N N N -12.206 0.971 30.674 -6.802 3.430 -1.903 H35 8V2 76 8V2 H33 H28 H 0 1 N N N -10.487 0.487 30.866 -6.801 3.797 -0.161 H33 8V2 77 8V2 H34 H29 H 0 1 N N N -11.002 1.420 29.420 -5.530 4.465 -1.213 H34 8V2 78 8V2 H4A H30 H 0 1 N N N -8.880 -7.142 28.782 -1.419 -1.367 3.931 H4A 8V2 79 8V2 H39 H31 H 0 1 N N N -8.005 -6.781 30.309 -0.059 -1.417 2.764 H39 8V2 80 8V2 H41 H32 H 0 1 N N N -5.702 -13.212 24.538 8.654 0.110 -0.912 H41 8V2 81 8V2 H42 H33 H 0 1 N N N -5.615 -13.447 22.760 8.874 -1.349 -1.929 H42 8V2 82 8V2 H5 H34 H 0 1 N N N -6.289 -11.037 23.809 6.584 -1.438 -2.522 H5 8V2 83 8V2 H6 H35 H 0 1 N N N -5.356 -11.370 21.246 7.577 0.582 -3.479 H6 8V2 84 8V2 H8 H36 H 0 1 N N N -3.373 -8.255 22.745 5.693 2.519 -0.733 H8 8V2 85 8V2 H87 H37 H 0 1 N N N -1.351 -14.705 27.280 5.693 -5.781 1.734 H87 8V2 86 8V2 H95 H38 H 0 1 N N N -3.064 -14.409 27.731 4.260 -4.889 1.167 H95 8V2 87 8V2 H96 H39 H 0 1 N N N -2.650 -14.919 26.059 5.453 -5.494 -0.007 H96 8V2 88 8V2 H92 H40 H 0 1 N N N -3.504 -6.142 27.138 2.780 2.999 1.851 H92 8V2 89 8V2 H91 H41 H 0 1 N N N -3.511 -4.893 25.847 1.857 4.278 0.994 H91 8V2 90 8V2 H43 H42 H 0 1 N N N -9.769 -0.529 28.500 -6.647 1.480 0.442 H43 8V2 91 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8V2 C7 C6 DOUB N N 1 8V2 C7 C8 SING N N 2 8V2 C6 C5 SING N N 3 8V2 C23 C8 SING N N 4 8V2 C23 C22 SING N N 5 8V2 C8 C21 SING N N 6 8V2 C5 C4 SING N N 7 8V2 C5 N1 SING N N 8 8V2 C22 N2 SING N N 9 8V2 C4 C3 SING N N 10 8V2 C3 C2 SING N N 11 8V2 C21 N2 SING N N 12 8V2 C21 C25 SING N N 13 8V2 N1 C25 SING N N 14 8V2 N1 C2 SING N N 15 8V2 N2 C20 SING N N 16 8V2 C25 O7 DOUB N N 17 8V2 C2 C1 SING N N 18 8V2 C17 C18 DOUB Y N 19 8V2 C17 C16 SING Y N 20 8V2 C18 C19 SING Y N 21 8V2 C16 C14 DOUB Y N 22 8V2 C19 C15 DOUB Y N 23 8V2 C20 C10 SING N N 24 8V2 C20 O6 DOUB N N 25 8V2 C14 C15 SING Y N 26 8V2 C14 C13 SING N N 27 8V2 C1 O2 SING N N 28 8V2 C1 O1 DOUB N N 29 8V2 C15 CL SING N N 30 8V2 C10 C9 SING N N 31 8V2 C10 N3 SING N N 32 8V2 C13 C12 SING N N 33 8V2 O2 C87 SING N N 34 8V2 C9 C24 SING N N 35 8V2 O3 C31 DOUB N N 36 8V2 O4 C11 DOUB N N 37 8V2 N3 C31 SING N N 38 8V2 N3 C27 SING N N 39 8V2 C31 C35 SING N N 40 8V2 C24 C27 SING N N 41 8V2 C12 C11 SING N N 42 8V2 C12 N4 SING N N 43 8V2 C11 N5 SING N N 44 8V2 N4 C32 SING N N 45 8V2 C27 C28 SING N N 46 8V2 N5 C35 SING N N 47 8V2 N5 C30 SING N N 48 8V2 C35 C34 SING N N 49 8V2 C35 C26 SING N N 50 8V2 C30 C29 SING N N 51 8V2 C32 O5 DOUB N N 52 8V2 C32 C33 SING N N 53 8V2 C34 C29 SING N N 54 8V2 C28 C26 DOUB N N 55 8V2 C7 H7 SING N N 56 8V2 C16 H16 SING N N 57 8V2 C19 H19 SING N N 58 8V2 C22 H93 SING N N 59 8V2 C22 H22 SING N N 60 8V2 C10 H10 SING N N 61 8V2 C12 H12 SING N N 62 8V2 C13 H13 SING N N 63 8V2 C13 H36 SING N N 64 8V2 C17 H17 SING N N 65 8V2 C18 H18 SING N N 66 8V2 C2 H25 SING N N 67 8V2 C21 H21 SING N N 68 8V2 C23 H94 SING N N 69 8V2 C23 H23 SING N N 70 8V2 C24 H4B SING N N 71 8V2 C24 H24 SING N N 72 8V2 C26 H26 SING N N 73 8V2 C27 H27 SING N N 74 8V2 C28 H28 SING N N 75 8V2 C29 H38 SING N N 76 8V2 C29 H29 SING N N 77 8V2 C3 H31 SING N N 78 8V2 C3 H32 SING N N 79 8V2 C30 H30 SING N N 80 8V2 C30 H37 SING N N 81 8V2 C33 H35 SING N N 82 8V2 C33 H33 SING N N 83 8V2 C33 H34 SING N N 84 8V2 C34 H4A SING N N 85 8V2 C34 H39 SING N N 86 8V2 C4 H41 SING N N 87 8V2 C4 H42 SING N N 88 8V2 C5 H5 SING N N 89 8V2 C6 H6 SING N N 90 8V2 C8 H8 SING N N 91 8V2 C87 H87 SING N N 92 8V2 C87 H95 SING N N 93 8V2 C87 H96 SING N N 94 8V2 C9 H92 SING N N 95 8V2 C9 H91 SING N N 96 8V2 N4 H43 SING N N 97 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8V2 InChI InChI 1.03 "InChI=1S/C36H42ClN5O7/c1-21(43)38-27(20-23-6-3-4-7-26(23)37)31(44)40-18-5-16-36(40)17-14-25-10-12-28(42(25)35(36)48)32(45)39-19-15-22-8-9-24-11-13-29(34(47)49-2)41(24)33(46)30(22)39/h3-4,6-9,14,17,22,24-25,27-30H,5,10-13,15-16,18-20H2,1-2H3,(H,38,43)/t22-,24-,25-,27-,28-,29+,30-,36+/m0/s1" 8V2 InChIKey InChI 1.03 GZPHGKMETPUDJS-UIJLVBHGSA-N 8V2 SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@H]1CC[C@@H]2C=C[C@H]3CCN([C@@H]3C(=O)N12)C(=O)[C@@H]4CC[C@H]5C=C[C@]6(CCCN6C(=O)[C@H](Cc7ccccc7Cl)NC(C)=O)C(=O)N45" 8V2 SMILES CACTVS 3.385 "COC(=O)[CH]1CC[CH]2C=C[CH]3CCN([CH]3C(=O)N12)C(=O)[CH]4CC[CH]5C=C[C]6(CCCN6C(=O)[CH](Cc7ccccc7Cl)NC(C)=O)C(=O)N45" 8V2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@@H](Cc1ccccc1Cl)C(=O)N2CCC[C@]23C=C[C@@H]4CC[C@H](N4C3=O)C(=O)N5CC[C@H]6[C@H]5C(=O)N7[C@H](CC[C@@H]7C(=O)OC)C=C6" 8V2 SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)NC(Cc1ccccc1Cl)C(=O)N2CCCC23C=CC4CCC(N4C3=O)C(=O)N5CCC6C5C(=O)N7C(CCC7C(=O)OC)C=C6" # _pdbx_chem_comp_identifier.comp_id 8V2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "methyl (3~{S},7~{R},10~{R},13~{R})-4-[(3~{S},6~{R},8~{a}~{S})-1'-[(2~{S})-2-acetamido-3-(2-chlorophenyl)propanoyl]-5-oxidanylidene-spiro[1,2,3,8~{a}-tetrahydroindolizine-6,2'-pyrrolidine]-3-yl]carbonyl-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8V2 "Create component" 2017-03-10 EBI 8V2 "Initial release" 2018-03-21 RCSB 8V2 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8V2 _pdbx_chem_comp_synonyms.name Ac-[2-Cl-F]-[ProM-2]-[ProM-12]-OMe _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##