data_8VG # _chem_comp.id 8VG _chem_comp.name "5-[[(5~{S})-6-[[(1~{S})-1-(4-hydroxyphenyl)-2-oxidanylidene-2-(prop-2-ynylamino)ethyl]amino]-6-oxidanylidene-5-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]carbonylamino]hexyl]amino]-5-sulfanylidene-pentanoic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H33 F3 N6 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-09 _chem_comp.pdbx_modified_date 2023-09-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 674.691 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8VG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7X3P _chem_comp.pdbx_subcomponent_list "8KT 8QA D4P RRA" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8VG C33 C23 C 0 1 N N N 8.775 -14.477 52.368 -1.447 1.434 -0.950 C33 8KT 1 8VG O34 O6 O 0 1 N N N 8.705 -14.734 53.530 -1.987 1.020 -1.958 O34 8KT 2 8VG C35 C24 C 0 1 Y N N 9.306 -15.502 51.375 -1.498 2.875 -0.623 C35 8KT 3 8VG C36 C25 C 0 1 Y N N 10.271 -16.395 51.774 -2.166 3.763 -1.469 C36 8KT 4 8VG C37 C26 C 0 1 Y N N 10.735 -17.352 50.888 -2.210 5.106 -1.157 C37 8KT 5 8VG C38 C27 C 0 1 Y N N 10.244 -17.367 49.593 -1.595 5.574 -0.010 C38 8KT 6 8VG C39 C28 C 0 1 Y N N 9.283 -16.463 49.180 -0.932 4.700 0.833 C39 8KT 7 8VG C40 C29 C 0 1 Y N N 8.806 -15.526 50.085 -0.885 3.353 0.536 C40 8KT 8 8VG C41 C30 C 0 1 N N N 10.667 -18.357 48.539 -1.647 7.043 0.323 C41 8KT 9 8VG C42 C31 C 0 1 N N N 11.754 -19.344 48.972 -2.831 7.501 1.177 C42 8KT 10 8VG F43 F1 F 0 1 N N N 12.039 -20.152 47.907 -2.740 8.879 1.400 F43 8KT 11 8VG F44 F2 F 0 1 N N N 11.374 -20.094 50.027 -4.026 7.214 0.509 F44 8KT 12 8VG F45 F3 F 0 1 N N N 12.867 -18.674 49.331 -2.809 6.827 2.404 F45 8KT 13 8VG N46 N5 N 0 1 N N N 10.724 -18.152 47.069 -1.049 7.996 -0.615 N46 8KT 14 8VG N47 N6 N 0 1 N N N 9.767 -18.932 47.495 -0.387 7.786 0.415 N47 8KT 15 8VG N01 N1 N 0 1 N N N 8.320 -13.222 51.826 -0.807 0.579 -0.129 N01 8QA 16 8VG C02 C1 C 0 1 N N S 7.773 -12.271 52.753 -0.761 -0.850 -0.450 C02 8QA 17 8VG C03 C2 C 0 1 N N N 6.371 -12.745 53.094 -2.010 -1.520 0.062 C03 8QA 18 8VG O04 O1 O 0 1 N N N 5.540 -13.092 52.289 -2.855 -0.868 0.639 O04 8QA 19 8VG C20 C14 C 0 1 N N N 7.756 -10.929 52.069 0.465 -1.482 0.212 C20 8QA 20 8VG C21 C15 C 0 1 N N N 7.199 -9.862 53.029 1.737 -0.889 -0.398 C21 8QA 21 8VG C22 C16 C 0 1 N N N 7.319 -8.472 52.376 2.963 -1.521 0.263 C22 8QA 22 8VG C23 C17 C 0 1 N N N 6.755 -7.422 53.348 4.235 -0.928 -0.347 C23 8QA 23 8VG N24 N4 N 0 1 N N N 6.832 -6.122 52.680 5.409 -1.534 0.286 N24 8QA 24 8VG C25 C18 C 0 1 N N N 6.700 -4.940 53.445 6.647 -1.162 -0.094 C25 8QA 25 8VG S26 S1 S 0 1 N N N 6.342 -4.961 55.008 6.834 -0.060 -1.237 S26 8QA 26 8VG C27 C19 C 0 1 N N N 7.006 -3.665 52.671 7.854 -1.785 0.557 C27 8QA 27 8VG C28 C20 C 0 1 N N N 5.845 -2.690 52.740 9.126 -1.192 -0.053 C28 8QA 28 8VG C29 C21 C 0 1 N N N 4.602 -3.306 52.088 10.352 -1.824 0.609 C29 8QA 29 8VG C30 C22 C 0 1 N N N 3.642 -2.137 52.044 11.604 -1.240 0.008 C30 8QA 30 8VG O31 O4 O 0 1 N N N 3.358 -1.554 53.136 12.809 -1.649 0.437 O31 8QA 31 8VG O32 O5 O 0 1 N N N 3.241 -1.750 50.915 11.525 -0.404 -0.861 O32 8QA 32 8VG N05 N2 N 0 1 N N N 6.069 -12.795 54.503 -2.187 -2.843 -0.120 N D4P 33 8VG C06 C3 C 0 1 N N S 4.787 -13.288 54.929 -3.343 -3.517 0.478 CA D4P 34 8VG C07 C4 C 0 1 N N N 4.538 -12.750 56.311 -3.002 -4.961 0.740 C D4P 35 8VG O08 O2 O 0 1 N N N 5.455 -12.561 57.045 -2.079 -5.483 0.151 O D4P 36 8VG C13 C8 C 0 1 Y N N 4.810 -14.814 55.072 -4.514 -3.440 -0.468 C1 D4P 37 8VG C14 C9 C 0 1 Y N N 6.013 -15.472 55.279 -5.765 -3.096 0.010 C2 D4P 38 8VG C15 C10 C 0 1 Y N N 6.032 -16.858 55.411 -6.840 -3.025 -0.855 C3 D4P 39 8VG C16 C11 C 0 1 Y N N 4.836 -17.554 55.319 -6.664 -3.300 -2.203 C4 D4P 40 8VG O19 O3 O 0 1 N N N 4.830 -18.956 55.447 -7.720 -3.231 -3.056 O4 D4P 41 8VG C17 C12 C 0 1 Y N N 3.633 -16.889 55.102 -5.407 -3.645 -2.680 C5 D4P 42 8VG C18 C13 C 0 1 Y N N 3.616 -15.507 54.969 -4.334 -3.709 -1.812 C6 D4P 43 8VG N09 N3 N 0 1 N N N 3.167 -12.508 56.662 -3.723 -5.673 1.629 N03 RRA 44 8VG C10 C5 C 0 1 N N N 2.872 -12.009 58.022 -3.392 -7.077 1.883 C37 RRA 45 8VG C11 C6 C 0 1 N N N 2.448 -10.540 58.016 -4.319 -7.626 2.886 C38 RRA 46 8VG C12 C7 C 0 1 N N N 2.115 -9.398 58.013 -5.059 -8.063 3.686 C39 RRA 47 8VG H30 H30 H 0 1 N N N 10.667 -16.350 52.778 -2.646 3.399 -2.365 H30 8KT 48 8VG H31 H31 H 0 1 N N N 11.470 -18.078 51.202 -2.726 5.794 -1.811 H31 8KT 49 8VG H32 H32 H 0 1 N N N 8.909 -16.486 48.167 -0.453 5.071 1.727 H32 8KT 50 8VG H33 H33 H 0 1 N N N 8.048 -14.818 49.784 -0.367 2.671 1.195 H33 8KT 51 8VG H1 H1 H 0 1 N N N 8.382 -13.022 50.848 -0.376 0.910 0.675 H1 8QA 52 8VG H2 H2 H 0 1 N N N 8.381 -12.218 53.668 -0.697 -0.977 -1.531 H2 8QA 53 8VG H14 H14 H 0 1 N N N 8.780 -10.656 51.774 0.447 -1.278 1.282 H14 8QA 54 8VG H15 H15 H 0 1 N N N 7.119 -10.983 51.174 0.452 -2.559 0.047 H15 8QA 55 8VG H16 H16 H 0 1 N N N 6.142 -10.077 53.243 1.756 -1.093 -1.469 H16 8QA 56 8VG H17 H17 H 0 1 N N N 7.773 -9.877 53.967 1.751 0.189 -0.234 H17 8QA 57 8VG H18 H18 H 0 1 N N N 8.376 -8.252 52.165 2.944 -1.317 1.334 H18 8QA 58 8VG H19 H19 H 0 1 N N N 6.746 -8.453 51.437 2.949 -2.599 0.099 H19 8QA 59 8VG H20 H20 H 0 1 N N N 5.709 -7.658 53.591 4.253 -1.133 -1.418 H20 8QA 60 8VG H21 H21 H 0 1 N N N 7.352 -7.406 54.272 4.248 0.149 -0.183 H21 8QA 61 8VG H22 H22 H 0 1 N N N 6.977 -6.070 51.692 5.295 -2.202 0.980 H22 8QA 62 8VG H23 H23 H 0 1 N N N 7.198 -3.921 51.619 7.836 -1.581 1.628 H23 8QA 63 8VG H24 H24 H 0 1 N N N 7.900 -3.190 53.101 7.841 -2.862 0.393 H24 8QA 64 8VG H25 H25 H 0 1 N N N 6.114 -1.765 52.209 9.145 -1.396 -1.123 H25 8QA 65 8VG H26 H26 H 0 1 N N N 5.627 -2.458 53.793 9.140 -0.114 0.112 H26 8QA 66 8VG H27 H27 H 0 1 N N N 4.199 -4.128 52.698 10.333 -1.620 1.679 H27 8QA 67 8VG H28 H28 H 0 1 N N N 4.825 -3.675 51.076 10.339 -2.902 0.444 H28 8QA 68 8VG H29 H29 H 0 1 N N N 2.808 -0.800 52.959 13.583 -1.245 0.022 H29 8QA 69 8VG H3 H3 H 0 1 N N N 6.743 -12.490 55.176 -1.550 -3.350 -0.648 HN2 D4P 70 8VG H4 H4 H 0 1 N N N 3.985 -12.981 54.242 -3.602 -3.028 1.417 HA D4P 71 8VG H9 H9 H 0 1 N N N 6.934 -14.910 55.338 -5.902 -2.882 1.060 H2 D4P 72 8VG H10 H10 H 0 1 N N N 6.961 -17.381 55.582 -7.817 -2.757 -0.481 H3 D4P 73 8VG H13 H13 H 0 1 N N N 5.717 -19.265 55.590 -7.848 -2.359 -3.453 H4 D4P 74 8VG H11 H11 H 0 1 N N N 2.712 -17.448 55.037 -5.267 -3.860 -3.729 H5 D4P 75 8VG H12 H12 H 0 1 N N N 2.689 -14.983 54.789 -3.355 -3.973 -2.183 H6 D4P 76 8VG H5 H5 H 0 1 N N N 2.432 -12.672 56.004 -4.461 -5.255 2.100 HN03 RRA 77 8VG H6 H6 H 0 1 N N N 2.058 -12.611 58.452 -3.481 -7.645 0.957 H37 RRA 78 8VG H7 H7 H 0 1 N N N 3.774 -12.115 58.642 -2.370 -7.148 2.256 H37A RRA 79 8VG H8 H8 H 0 1 N N N 1.818 -8.380 58.010 -5.720 -8.455 4.401 H39 RRA 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8VG N46 N47 DOUB N N 1 8VG N46 C41 SING N N 2 8VG N47 C41 SING N N 3 8VG F43 C42 SING N N 4 8VG C41 C42 SING N N 5 8VG C41 C38 SING N N 6 8VG C42 F45 SING N N 7 8VG C42 F44 SING N N 8 8VG C39 C38 DOUB Y N 9 8VG C39 C40 SING Y N 10 8VG C38 C37 SING Y N 11 8VG C40 C35 DOUB Y N 12 8VG C37 C36 DOUB Y N 13 8VG O32 C30 DOUB N N 14 8VG C35 C36 SING Y N 15 8VG C35 C33 SING N N 16 8VG N01 C33 SING N N 17 8VG N01 C02 SING N N 18 8VG C30 C29 SING N N 19 8VG C30 O31 SING N N 20 8VG C20 C02 SING N N 21 8VG C20 C21 SING N N 22 8VG C29 C28 SING N N 23 8VG O04 C03 DOUB N N 24 8VG C33 O34 DOUB N N 25 8VG C22 C21 SING N N 26 8VG C22 C23 SING N N 27 8VG C27 C28 SING N N 28 8VG C27 C25 SING N N 29 8VG N24 C23 SING N N 30 8VG N24 C25 SING N N 31 8VG C02 C03 SING N N 32 8VG C03 N05 SING N N 33 8VG C25 S26 DOUB N N 34 8VG N05 C06 SING N N 35 8VG C06 C13 SING N N 36 8VG C06 C07 SING N N 37 8VG C18 C13 DOUB Y N 38 8VG C18 C17 SING Y N 39 8VG C13 C14 SING Y N 40 8VG C17 C16 DOUB Y N 41 8VG C14 C15 DOUB Y N 42 8VG C16 C15 SING Y N 43 8VG C16 O19 SING N N 44 8VG C07 N09 SING N N 45 8VG C07 O08 DOUB N N 46 8VG N09 C10 SING N N 47 8VG C12 C11 TRIP N N 48 8VG C11 C10 SING N N 49 8VG N01 H1 SING N N 50 8VG C02 H2 SING N N 51 8VG N05 H3 SING N N 52 8VG C06 H4 SING N N 53 8VG N09 H5 SING N N 54 8VG C10 H6 SING N N 55 8VG C10 H7 SING N N 56 8VG C12 H8 SING N N 57 8VG C14 H9 SING N N 58 8VG C15 H10 SING N N 59 8VG C17 H11 SING N N 60 8VG C18 H12 SING N N 61 8VG O19 H13 SING N N 62 8VG C20 H14 SING N N 63 8VG C20 H15 SING N N 64 8VG C21 H16 SING N N 65 8VG C21 H17 SING N N 66 8VG C22 H18 SING N N 67 8VG C22 H19 SING N N 68 8VG C23 H20 SING N N 69 8VG C23 H21 SING N N 70 8VG N24 H22 SING N N 71 8VG C27 H23 SING N N 72 8VG C27 H24 SING N N 73 8VG C28 H25 SING N N 74 8VG C28 H26 SING N N 75 8VG C29 H27 SING N N 76 8VG C29 H28 SING N N 77 8VG O31 H29 SING N N 78 8VG C36 H30 SING N N 79 8VG C37 H31 SING N N 80 8VG C39 H32 SING N N 81 8VG C40 H33 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8VG InChI InChI 1.03 "InChI=1S/C31H33F3N6O6S/c1-2-17-36-29(46)26(19-11-15-22(41)16-12-19)38-28(45)23(6-3-4-18-35-24(47)7-5-8-25(42)43)37-27(44)20-9-13-21(14-10-20)30(39-40-30)31(32,33)34/h1,9-16,23,26,41H,3-8,17-18H2,(H,35,47)(H,36,46)(H,37,44)(H,38,45)(H,42,43)/t23-,26-/m0/s1" 8VG InChIKey InChI 1.03 BSPJSERNTAGWAV-OZXSUGGESA-N 8VG SMILES_CANONICAL CACTVS 3.385 "OC(=O)CCCC(=S)NCCCC[C@H](NC(=O)c1ccc(cc1)C2(N=N2)C(F)(F)F)C(=O)N[C@H](C(=O)NCC#C)c3ccc(O)cc3" 8VG SMILES CACTVS 3.385 "OC(=O)CCCC(=S)NCCCC[CH](NC(=O)c1ccc(cc1)C2(N=N2)C(F)(F)F)C(=O)N[CH](C(=O)NCC#C)c3ccc(O)cc3" 8VG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#CCNC(=O)[C@H](c1ccc(cc1)O)NC(=O)[C@H](CCCCNC(=S)CCCC(=O)O)NC(=O)c2ccc(cc2)C3(N=N3)C(F)(F)F" 8VG SMILES "OpenEye OEToolkits" 2.0.7 "C#CCNC(=O)C(c1ccc(cc1)O)NC(=O)C(CCCCNC(=S)CCCC(=O)O)NC(=O)c2ccc(cc2)C3(N=N3)C(F)(F)F" # _pdbx_chem_comp_identifier.comp_id 8VG _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[(5~{S})-6-[[(1~{S})-1-(4-hydroxyphenyl)-2-oxidanylidene-2-(prop-2-ynylamino)ethyl]amino]-6-oxidanylidene-5-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]carbonylamino]hexyl]amino]-5-sulfanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8VG "Create component" 2022-03-09 PDBJ 8VG "Initial release" 2023-09-06 RCSB #