data_8VI # _chem_comp.id 8VI _chem_comp.name "N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H31 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2016-05-16 _chem_comp.pdbx_modified_date 2016-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 437.535 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8VI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5G4S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8VI C01 C01 C 0 1 N N N 32.275 27.683 38.036 -1.577 1.368 -2.651 C01 8VI 1 8VI C05 C05 C 0 1 N N N 31.185 26.655 38.166 -1.353 0.036 -1.932 C05 8VI 2 8VI N08 N08 N 0 1 N N N 30.928 25.983 36.895 -0.856 0.289 -0.577 N08 8VI 3 8VI C09 C09 C 0 1 N N N 31.583 24.825 36.619 -1.724 0.552 0.420 C09 8VI 4 8VI O10 O10 O 0 1 N N N 31.418 24.232 35.569 -1.309 0.869 1.518 O10 8VI 5 8VI C11 C11 C 0 1 Y N N 32.515 24.291 37.668 -3.176 0.458 0.179 C11 8VI 6 8VI C12 C12 C 0 1 Y N N 33.840 24.727 37.686 -3.725 -0.713 -0.350 C12 8VI 7 8VI C14 C14 C 0 1 Y N N 34.722 24.246 38.639 -5.083 -0.795 -0.572 C14 8VI 8 8VI C16 C16 C 0 1 Y N N 34.299 23.332 39.579 -5.906 0.278 -0.275 C16 8VI 9 8VI C18 C18 C 0 1 Y N N 32.990 22.885 39.580 -5.376 1.441 0.248 C18 8VI 10 8VI C20 C20 C 0 1 Y N N 32.102 23.366 38.632 -4.013 1.539 0.484 C20 8VI 11 8VI O21 O21 O 0 1 N N N 30.795 22.973 38.559 -3.492 2.679 1.003 O21 8VI 12 8VI C22 C22 C 0 1 N N N 30.476 21.661 39.014 -4.406 3.739 1.290 C22 8VI 13 8VI C26 C26 C 0 1 Y N N 30.040 26.608 35.965 0.521 0.256 -0.318 C26 8VI 14 8VI C27 C27 C 0 1 Y N N 30.570 27.196 34.816 1.275 1.413 -0.437 C27 8VI 15 8VI C29 C29 C 0 1 Y N N 29.716 27.799 33.916 2.637 1.379 -0.180 C29 8VI 16 8VI N30 N30 N 0 1 N N N 29.949 28.455 32.708 3.639 2.349 -0.212 N30 8VI 17 8VI C31 C31 C 0 1 N N N 31.251 28.677 32.081 3.455 3.761 -0.557 C31 8VI 18 8VI C35 C35 C 0 1 N N N 28.751 28.874 32.172 4.804 1.767 0.130 C35 8VI 19 8VI O36 O36 O 0 1 N N N 28.594 29.477 31.128 5.878 2.336 0.201 O36 8VI 20 8VI N37 N37 N 0 1 N N N 27.767 28.486 33.058 4.602 0.461 0.382 N37 8VI 21 8VI C38 C38 C 0 1 N N N 26.341 28.737 32.864 5.629 -0.504 0.783 C38 8VI 22 8VI C42 C42 C 0 1 Y N N 28.345 27.815 34.135 3.248 0.181 0.197 C42 8VI 23 8VI C43 C43 C 0 1 Y N N 27.800 27.229 35.259 2.493 -0.976 0.315 C43 8VI 24 8VI C45 C45 C 0 1 Y N N 28.648 26.627 36.190 1.131 -0.940 0.064 C45 8VI 25 8VI N46 N46 N 0 1 N N N 28.141 26.007 37.341 0.365 -2.107 0.188 N46 8VI 26 8VI C47 C47 C 0 1 N N N 28.009 24.550 37.268 0.354 -2.584 1.578 C47 8VI 27 8VI C50 C50 C 0 1 N N N 27.679 23.958 38.614 -0.554 -3.811 1.686 C50 8VI 28 8VI N53 N53 N 0 1 N N N 26.459 24.573 39.143 -0.069 -4.858 0.776 N53 8VI 29 8VI C55 C55 C 0 1 N N N 26.634 26.018 39.289 -0.059 -4.381 -0.614 C55 8VI 30 8VI C58 C58 C 0 1 N N R 26.999 26.682 37.984 0.850 -3.154 -0.722 C58 8VI 31 8VI C60 C60 C 0 1 N N N 27.224 28.170 38.191 0.831 -2.630 -2.159 C60 8VI 32 8VI H011 H011 H 0 0 N N N 32.441 28.167 39.010 -1.946 1.180 -3.659 H011 8VI 33 8VI H012 H012 H 0 0 N N N 33.203 27.193 37.707 -2.308 1.959 -2.100 H012 8VI 34 8VI H013 H013 H 0 0 N N N 31.978 28.440 37.296 -0.635 1.914 -2.705 H013 8VI 35 8VI H051 H051 H 0 0 N N N 31.488 25.905 38.912 -2.295 -0.510 -1.878 H051 8VI 36 8VI H052 H052 H 0 0 N N N 30.263 27.153 38.500 -0.622 -0.556 -2.483 H052 8VI 37 8VI H12 H12 H 0 1 N N N 34.180 25.443 36.953 -3.087 -1.553 -0.584 H12 8VI 38 8VI H14 H14 H 0 1 N N N 35.746 24.589 38.645 -5.506 -1.701 -0.981 H14 8VI 39 8VI H16 H16 H 0 1 N N N 34.993 22.962 40.319 -6.969 0.205 -0.454 H16 8VI 40 8VI H18 H18 H 0 1 N N N 32.662 22.165 40.316 -6.025 2.274 0.477 H18 8VI 41 8VI H221 H221 H 0 0 N N N 29.397 21.484 38.896 -3.861 4.589 1.699 H221 8VI 42 8VI H222 H222 H 0 0 N N N 31.035 20.922 38.422 -4.912 4.040 0.372 H222 8VI 43 8VI H223 H223 H 0 0 N N N 30.750 21.564 40.075 -5.144 3.397 2.016 H223 8VI 44 8VI H27 H27 H 0 1 N N N 31.634 27.179 34.634 0.803 2.339 -0.728 H27 8VI 45 8VI H311 H311 H 0 0 N N N 31.115 29.222 31.135 3.229 4.330 0.345 H311 8VI 46 8VI H312 H312 H 0 0 N N N 31.887 29.268 32.757 4.369 4.147 -1.010 H312 8VI 47 8VI H313 H313 H 0 0 N N N 31.731 27.708 31.879 2.631 3.858 -1.264 H313 8VI 48 8VI H381 H381 H 0 0 N N N 25.777 28.326 33.714 6.594 -0.002 0.848 H381 8VI 49 8VI H382 H382 H 0 0 N N N 26.165 29.821 32.797 5.372 -0.925 1.756 H382 8VI 50 8VI H383 H383 H 0 0 N N N 26.007 28.253 31.934 5.684 -1.304 0.045 H383 8VI 51 8VI H43 H43 H 0 1 N N N 26.732 27.236 35.416 2.965 -1.903 0.606 H43 8VI 52 8VI H471 H471 H 0 0 N N N 27.205 24.299 36.560 1.367 -2.854 1.877 H471 8VI 53 8VI H472 H472 H 0 0 N N N 28.958 24.122 36.912 -0.020 -1.796 2.230 H472 8VI 54 8VI H58 H58 H 0 1 N N N 26.133 26.578 37.314 1.868 -3.431 -0.448 H58 8VI 55 8VI H501 H501 H 0 0 N N N 27.525 22.874 38.508 -0.541 -4.184 2.710 H501 8VI 56 8VI H502 H502 H 0 0 N N N 28.512 24.144 39.308 -1.572 -3.534 1.413 H502 8VI 57 8VI H53 H53 H 0 1 N N N 25.702 24.395 38.514 0.845 -5.184 1.054 H53 8VI 58 8VI H551 H551 H 0 0 N N N 25.693 26.453 39.657 0.316 -5.170 -1.266 H551 8VI 59 8VI H552 H552 H 0 0 N N N 27.435 26.206 40.019 -1.071 -4.111 -0.913 H552 8VI 60 8VI H601 H601 H 0 0 N N N 26.339 28.612 38.673 1.477 -1.755 -2.236 H601 8VI 61 8VI H602 H602 H 0 0 N N N 28.105 28.322 38.833 1.191 -3.407 -2.834 H602 8VI 62 8VI H603 H603 H 0 0 N N N 27.392 28.654 37.218 -0.187 -2.355 -2.432 H603 8VI 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8VI C01 C05 SING N N 1 8VI C05 N08 SING N N 2 8VI N08 C09 SING N N 3 8VI N08 C26 SING N N 4 8VI C09 O10 DOUB N N 5 8VI C09 C11 SING N N 6 8VI C11 C12 SING Y N 7 8VI C11 C20 DOUB Y N 8 8VI C12 C14 DOUB Y N 9 8VI C14 C16 SING Y N 10 8VI C16 C18 DOUB Y N 11 8VI C18 C20 SING Y N 12 8VI C20 O21 SING N N 13 8VI O21 C22 SING N N 14 8VI C26 C27 SING Y N 15 8VI C26 C45 DOUB Y N 16 8VI C27 C29 DOUB Y N 17 8VI C29 N30 SING N N 18 8VI C29 C42 SING Y N 19 8VI N30 C31 SING N N 20 8VI N30 C35 SING N N 21 8VI C35 O36 DOUB N N 22 8VI C35 N37 SING N N 23 8VI N37 C38 SING N N 24 8VI N37 C42 SING N N 25 8VI C42 C43 DOUB Y N 26 8VI C43 C45 SING Y N 27 8VI C45 N46 SING N N 28 8VI N46 C47 SING N N 29 8VI N46 C58 SING N N 30 8VI C47 C50 SING N N 31 8VI C50 N53 SING N N 32 8VI N53 C55 SING N N 33 8VI C55 C58 SING N N 34 8VI C58 C60 SING N N 35 8VI C01 H011 SING N N 36 8VI C01 H012 SING N N 37 8VI C01 H013 SING N N 38 8VI C05 H051 SING N N 39 8VI C05 H052 SING N N 40 8VI C12 H12 SING N N 41 8VI C14 H14 SING N N 42 8VI C16 H16 SING N N 43 8VI C18 H18 SING N N 44 8VI C22 H221 SING N N 45 8VI C22 H222 SING N N 46 8VI C22 H223 SING N N 47 8VI C27 H27 SING N N 48 8VI C31 H311 SING N N 49 8VI C31 H312 SING N N 50 8VI C31 H313 SING N N 51 8VI C38 H381 SING N N 52 8VI C38 H382 SING N N 53 8VI C38 H383 SING N N 54 8VI C43 H43 SING N N 55 8VI C47 H471 SING N N 56 8VI C47 H472 SING N N 57 8VI C58 H58 SING N N 58 8VI C50 H501 SING N N 59 8VI C50 H502 SING N N 60 8VI N53 H53 SING N N 61 8VI C55 H551 SING N N 62 8VI C55 H552 SING N N 63 8VI C60 H601 SING N N 64 8VI C60 H602 SING N N 65 8VI C60 H603 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8VI InChI InChI 1.03 "InChI=1S/C24H31N5O3/c1-6-28(23(30)17-9-7-8-10-22(17)32-5)20-13-18-19(27(4)24(31)26(18)3)14-21(20)29-12-11-25-15-16(29)2/h7-10,13-14,16,25H,6,11-12,15H2,1-5H3/t16-/m1/s1" 8VI InChIKey InChI 1.03 WFXIHQFRQPGCCR-MRXNPFEDSA-N 8VI SMILES_CANONICAL CACTVS 3.385 "CCN(C(=O)c1ccccc1OC)c2cc3N(C)C(=O)N(C)c3cc2N4CCNC[C@H]4C" 8VI SMILES CACTVS 3.385 "CCN(C(=O)c1ccccc1OC)c2cc3N(C)C(=O)N(C)c3cc2N4CCNC[CH]4C" 8VI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCN(c1cc2c(cc1N3CCNC[C@H]3C)N(C(=O)N2C)C)C(=O)c4ccccc4OC" 8VI SMILES "OpenEye OEToolkits" 1.7.6 "CCN(c1cc2c(cc1N3CCNCC3C)N(C(=O)N2C)C)C(=O)c4ccccc4OC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8VI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[1,3-dimethyl-6-[(2R)-2-methylpiperazin-1-yl]-2-oxidanylidene-benzimidazol-5-yl]-N-ethyl-2-methoxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8VI "Create component" 2016-05-16 EBI 8VI "Initial release" 2016-07-06 RCSB #