data_8W3 # _chem_comp.id 8W3 _chem_comp.name ;2-amino-4-((R)-1-((R,Z)-6-(5-chloro-2-methoxybenzyl)-7-oxo-3-(phenoxyimino)-1,4-diazepane-1-carboxamido)propyl)benzoic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H32 Cl N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;2-azanyl-4-[(1R)-1-[[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-7-oxidanylidene-3-phenoxyimino-1,4-diazepan-1-yl] carbonylamino]propyl]benzoic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-10-12 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 594.058 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5YJM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8W3 C1 C1 C 0 1 N N N -9.519 -16.738 -6.085 1.682 0.658 1.839 C1 8W3 1 8W3 O2 O1 O 0 1 N N N -8.567 -17.215 -5.481 1.686 1.163 2.941 O2 8W3 2 8W3 CL2 CL1 CL 0 0 N N N -14.062 -15.108 -0.439 7.086 4.054 -0.055 CL2 8W3 3 8W3 C9 C2 C 0 1 Y N N -13.053 -14.495 -1.585 6.353 2.563 -0.560 C9 8W3 4 8W3 C10 C3 C 0 1 Y N N -12.169 -15.319 -2.270 5.041 2.287 -0.216 C10 8W3 5 8W3 C8 C4 C 0 1 Y N N -13.125 -13.122 -1.791 7.079 1.655 -1.310 C8 8W3 6 8W3 C7 C5 C 0 1 Y N N -12.281 -12.579 -2.743 6.498 0.469 -1.713 C7 8W3 7 8W3 C6 C6 C 0 1 Y N N -11.348 -13.364 -3.458 5.184 0.188 -1.365 C6 8W3 8 8W3 O23 O2 O 0 1 N N N -10.499 -12.984 -4.458 4.610 -0.979 -1.761 O23 8W3 9 8W3 C24 C7 C 0 1 N N N -10.387 -11.634 -4.892 5.377 -1.817 -2.628 C24 8W3 10 8W3 C5 C8 C 0 1 Y N N -11.299 -14.725 -3.185 4.456 1.102 -0.618 C5 8W3 11 8W3 C4 C9 C 0 1 N N N -10.305 -15.535 -3.922 3.029 0.799 -0.239 C4 8W3 12 8W3 C3 C10 C 0 1 N N R -10.631 -16.043 -5.311 2.985 0.262 1.193 C3 8W3 13 8W3 C11 C11 C 0 1 N N N -12.054 -16.590 -5.482 3.092 -1.266 1.170 C11 8W3 14 8W3 N12 N1 N 0 1 N N N -12.608 -16.851 -6.764 2.348 -1.783 0.016 N12 8W3 15 8W3 C13 C12 C 0 1 N N N -12.088 -16.614 -7.995 0.998 -1.528 -0.105 C13 8W3 16 8W3 N14 N2 N 0 1 N N N -12.703 -16.899 -9.055 0.152 -2.502 -0.169 N14 8W3 17 8W3 O62 O3 O 0 1 N N N -14.015 -17.369 -8.779 0.609 -3.841 -0.117 O62 8W3 18 8W3 C63 C13 C 0 1 Y N N -14.749 -17.859 -9.809 -0.383 -4.767 -0.195 C63 8W3 19 8W3 C68 C14 C 0 1 Y N N -14.315 -17.949 -11.141 -0.999 -5.225 0.961 C68 8W3 20 8W3 C67 C15 C 0 1 Y N N -15.172 -18.528 -12.109 -2.010 -6.162 0.878 C67 8W3 21 8W3 C66 C16 C 0 1 Y N N -16.398 -19.091 -11.752 -2.409 -6.644 -0.355 C66 8W3 22 8W3 C65 C17 C 0 1 Y N N -16.814 -19.012 -10.419 -1.797 -6.189 -1.508 C65 8W3 23 8W3 C64 C18 C 0 1 Y N N -15.974 -18.443 -9.457 -0.785 -5.252 -1.431 C64 8W3 24 8W3 C15 C19 C 0 1 N N N -10.709 -16.034 -8.167 0.520 -0.096 -0.160 C15 8W3 25 8W3 N16 N3 N 0 1 N N N -9.684 -16.825 -7.470 0.514 0.450 1.205 N16 8W3 26 8W3 C17 C20 C 0 1 N N N -8.843 -17.556 -8.323 -0.652 0.747 1.812 C17 8W3 27 8W3 O18 O4 O 0 1 N N N -9.020 -17.589 -9.498 -0.658 1.111 2.972 O18 8W3 28 8W3 N19 N4 N 0 1 N N N -7.898 -18.313 -7.805 -1.812 0.640 1.134 N19 8W3 29 8W3 C20 C21 C 0 1 N N R -6.949 -19.097 -8.583 -3.068 1.062 1.759 C20 8W3 30 8W3 C30 C22 C 0 1 N N N -7.516 -20.522 -8.679 -3.627 -0.084 2.604 C30 8W3 31 8W3 C35 C23 C 0 1 N N N -6.538 -21.571 -8.419 -2.674 -0.373 3.766 C35 8W3 32 8W3 C21 C24 C 0 1 Y N N -5.718 -18.627 -7.858 -4.063 1.429 0.689 C21 8W3 33 8W3 C25 C25 C 0 1 Y N N -5.213 -19.220 -6.661 -4.884 2.525 0.863 C25 8W3 34 8W3 C26 C26 C 0 1 Y N N -4.104 -18.697 -5.989 -5.804 2.868 -0.120 C26 8W3 35 8W3 N57 N5 N 0 1 N N N -3.631 -19.383 -4.886 -6.631 3.970 0.053 N57 8W3 36 8W3 C29 C27 C 0 1 Y N N -5.130 -17.428 -8.303 -4.144 0.668 -0.466 C29 8W3 37 8W3 C28 C28 C 0 1 Y N N -4.035 -16.873 -7.631 -5.050 0.992 -1.452 C28 8W3 38 8W3 C27 C29 C 0 1 Y N N -3.492 -17.492 -6.472 -5.893 2.095 -1.289 C27 8W3 39 8W3 C31 C30 C 0 1 N N N -2.301 -16.822 -5.811 -6.863 2.448 -2.339 C31 8W3 40 8W3 O32 O5 O 0 1 N N N -1.813 -15.744 -6.296 -7.521 3.465 -2.241 O32 8W3 41 8W3 O33 O6 O 0 1 N N N -1.800 -17.364 -4.777 -7.022 1.643 -3.409 O33 8W3 42 8W3 H1 H1 H 0 1 N N N -12.156 -16.385 -2.100 4.475 2.999 0.366 H1 8W3 43 8W3 H2 H2 H 0 1 N N N -13.812 -12.505 -1.231 8.102 1.874 -1.580 H2 8W3 44 8W3 H3 H3 H 0 1 N N N -12.337 -11.520 -2.947 7.065 -0.239 -2.299 H3 8W3 45 8W3 H4 H4 H 0 1 N N N -9.646 -11.569 -5.703 5.606 -1.277 -3.546 H4 8W3 46 8W3 H5 H5 H 0 1 N N N -11.363 -11.285 -5.259 6.305 -2.101 -2.132 H5 8W3 47 8W3 H6 H6 H 0 1 N N N -10.065 -11.004 -4.050 4.804 -2.713 -2.866 H6 8W3 48 8W3 H7 H7 H 0 1 N N N -10.090 -16.418 -3.302 2.435 1.711 -0.304 H7 8W3 49 8W3 H8 H8 H 0 1 N N N -9.397 -14.921 -4.012 2.623 0.052 -0.920 H8 8W3 50 8W3 H9 H9 H 0 1 N N N -10.708 -15.096 -5.865 3.815 0.677 1.764 H9 8W3 51 8W3 H10 H10 H 0 1 N N N -12.724 -15.864 -4.998 4.139 -1.557 1.087 H10 8W3 52 8W3 H11 H11 H 0 1 N N N -13.340 -17.581 -11.424 -0.688 -4.849 1.925 H11 8W3 53 8W3 H12 H12 H 0 1 N N N -14.870 -18.534 -13.146 -2.490 -6.518 1.778 H12 8W3 54 8W3 H13 H13 H 0 1 N N N -17.015 -19.579 -12.492 -3.200 -7.377 -0.417 H13 8W3 55 8W3 H14 H14 H 0 1 N N N -17.784 -19.391 -10.133 -2.110 -6.567 -2.470 H14 8W3 56 8W3 H15 H15 H 0 1 N N N -16.275 -18.454 -8.420 -0.310 -4.893 -2.333 H15 8W3 57 8W3 H16 H16 H 0 1 N N N -10.467 -16.007 -9.240 1.191 0.489 -0.788 H16 8W3 58 8W3 H17 H17 H 0 1 N N N -10.702 -15.011 -7.764 -0.489 -0.064 -0.571 H17 8W3 59 8W3 H18 H18 H 0 1 N N N -7.827 -18.352 -6.808 -1.815 0.284 0.231 H18 8W3 60 8W3 H19 H19 H 0 1 N N N -6.915 -18.687 -9.603 -2.884 1.927 2.396 H19 8W3 61 8W3 H20 H20 H 0 1 N N N -8.330 -20.620 -7.946 -4.604 0.198 2.997 H20 8W3 62 8W3 H21 H21 H 0 1 N N N -7.916 -20.667 -9.693 -3.727 -0.976 1.986 H21 8W3 63 8W3 H22 H22 H 0 1 N N N -7.022 -22.555 -8.507 -1.697 -0.655 3.372 H22 8W3 64 8W3 H23 H23 H 0 1 N N N -5.720 -21.498 -9.150 -2.573 0.519 4.384 H23 8W3 65 8W3 H24 H24 H 0 1 N N N -6.134 -21.451 -7.403 -3.072 -1.190 4.368 H24 8W3 66 8W3 H25 H25 H 0 1 N N N -5.702 -20.097 -6.264 -4.812 3.115 1.764 H25 8W3 67 8W3 H26 H26 H 0 1 N N N -2.842 -18.901 -4.506 -6.478 4.580 0.791 H26 8W3 68 8W3 H27 H27 H 0 1 N N N -4.351 -19.439 -4.195 -7.361 4.130 -0.565 H27 8W3 69 8W3 H28 H28 H 0 1 N N N -5.529 -16.930 -9.174 -3.494 -0.185 -0.594 H28 8W3 70 8W3 H29 H29 H 0 1 N N N -3.595 -15.958 -7.999 -5.108 0.395 -2.351 H29 8W3 71 8W3 H30 H30 H 0 1 N N N -1.062 -16.848 -4.475 -7.670 1.917 -4.072 H30 8W3 72 8W3 H31 H31 H 0 1 N N N -12.087 -17.542 -4.932 2.671 -1.675 2.089 H31 8W3 73 8W3 H32 H32 H 0 1 N N N -13.515 -17.272 -6.758 2.805 -2.305 -0.661 H32 8W3 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8W3 C67 C66 DOUB Y N 1 8W3 C67 C68 SING Y N 2 8W3 C66 C65 SING Y N 3 8W3 C68 C63 DOUB Y N 4 8W3 C65 C64 DOUB Y N 5 8W3 C63 C64 SING Y N 6 8W3 C63 O62 SING N N 7 8W3 O18 C17 DOUB N N 8 8W3 N14 O62 SING N N 9 8W3 N14 C13 DOUB N Z 10 8W3 C30 C20 SING N N 11 8W3 C30 C35 SING N N 12 8W3 C20 C21 SING N N 13 8W3 C20 N19 SING N N 14 8W3 C17 N19 SING N N 15 8W3 C17 N16 SING N N 16 8W3 C29 C21 DOUB Y N 17 8W3 C29 C28 SING Y N 18 8W3 C15 C13 SING N N 19 8W3 C15 N16 SING N N 20 8W3 C13 N12 SING N N 21 8W3 C21 C25 SING Y N 22 8W3 C28 C27 DOUB Y N 23 8W3 N16 C1 SING N N 24 8W3 N12 C11 SING N N 25 8W3 C25 C26 DOUB Y N 26 8W3 C27 C26 SING Y N 27 8W3 C27 C31 SING N N 28 8W3 O32 C31 DOUB N N 29 8W3 C1 O2 DOUB N N 30 8W3 C1 C3 SING N N 31 8W3 C26 N57 SING N N 32 8W3 C31 O33 SING N N 33 8W3 C11 C3 SING N N 34 8W3 C3 C4 SING N N 35 8W3 C24 O23 SING N N 36 8W3 O23 C6 SING N N 37 8W3 C4 C5 SING N N 38 8W3 C6 C5 DOUB Y N 39 8W3 C6 C7 SING Y N 40 8W3 C5 C10 SING Y N 41 8W3 C7 C8 DOUB Y N 42 8W3 C10 C9 DOUB Y N 43 8W3 C8 C9 SING Y N 44 8W3 C9 CL2 SING N N 45 8W3 C10 H1 SING N N 46 8W3 C8 H2 SING N N 47 8W3 C7 H3 SING N N 48 8W3 C24 H4 SING N N 49 8W3 C24 H5 SING N N 50 8W3 C24 H6 SING N N 51 8W3 C4 H7 SING N N 52 8W3 C4 H8 SING N N 53 8W3 C3 H9 SING N N 54 8W3 C11 H10 SING N N 55 8W3 C68 H11 SING N N 56 8W3 C67 H12 SING N N 57 8W3 C66 H13 SING N N 58 8W3 C65 H14 SING N N 59 8W3 C64 H15 SING N N 60 8W3 C15 H16 SING N N 61 8W3 C15 H17 SING N N 62 8W3 N19 H18 SING N N 63 8W3 C20 H19 SING N N 64 8W3 C30 H20 SING N N 65 8W3 C30 H21 SING N N 66 8W3 C35 H22 SING N N 67 8W3 C35 H23 SING N N 68 8W3 C35 H24 SING N N 69 8W3 C25 H25 SING N N 70 8W3 N57 H26 SING N N 71 8W3 N57 H27 SING N N 72 8W3 C29 H28 SING N N 73 8W3 C28 H29 SING N N 74 8W3 O33 H30 SING N N 75 8W3 C11 H31 SING N N 76 8W3 N12 H32 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8W3 InChI InChI 1.03 "InChI=1S/C30H32ClN5O6/c1-3-25(18-9-11-23(29(38)39)24(32)15-18)34-30(40)36-17-27(35-42-22-7-5-4-6-8-22)33-16-20(28(36)37)13-19-14-21(31)10-12-26(19)41-2/h4-12,14-15,20,25H,3,13,16-17,32H2,1-2H3,(H,33,35)(H,34,40)(H,38,39)/t20-,25-/m1/s1" 8W3 InChIKey InChI 1.03 LHASZEBEQGPCFM-CJFMBICVSA-N 8W3 SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](NC(=O)N1CC(/NC[C@@H](Cc2cc(Cl)ccc2OC)C1=O)=N/Oc3ccccc3)c4ccc(C(O)=O)c(N)c4" 8W3 SMILES CACTVS 3.385 "CC[CH](NC(=O)N1CC(NC[CH](Cc2cc(Cl)ccc2OC)C1=O)=NOc3ccccc3)c4ccc(C(O)=O)c(N)c4" 8W3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC[C@H](c1ccc(c(c1)N)C(=O)O)NC(=O)N2C/C(=N/Oc3ccccc3)/NC[C@H](C2=O)Cc4cc(ccc4OC)Cl" 8W3 SMILES "OpenEye OEToolkits" 2.0.6 "CCC(c1ccc(c(c1)N)C(=O)O)NC(=O)N2CC(=NOc3ccccc3)NCC(C2=O)Cc4cc(ccc4OC)Cl" # _pdbx_chem_comp_identifier.comp_id 8W3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "2-azanyl-4-[(1~{R})-1-[[(3~{Z},6~{R})-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-7-oxidanylidene-3-phenoxyimino-1,4-diazepan-1-yl]carbonylamino]propyl]benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8W3 "Create component" 2017-10-12 PDBJ 8W3 "Modify name" 2017-12-18 PDBJ 8W3 "Initial release" 2017-12-27 RCSB 8W3 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 8W3 _pdbx_chem_comp_synonyms.name "2-azanyl-4-[(1R)-1-[[(3Z,6R)-6-[(5-chloranyl-2-methoxy-phenyl)methyl]-7-oxidanylidene-3-phenoxyimino-1,4-diazepan-1-yl]carbonylamino]propyl]benzoic acid" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##