data_8W7
#
_chem_comp.id 8W7
_chem_comp.name "(3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H27 N3 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-03-08
_chem_comp.pdbx_modified_date 2017-04-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 449.499
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8W7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5V3O
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8W7 C1 C1 C 0 1 Y N N 46.852 57.264 -37.745 -2.722 -4.259 0.219 C1 8W7 1
8W7 C2 C2 C 0 1 Y N N 48.184 56.909 -37.929 -1.550 -3.526 0.213 C2 8W7 2
8W7 C3 C3 C 0 1 Y N N 48.536 55.584 -38.181 -1.594 -2.140 0.125 C3 8W7 3
8W7 C4 C4 C 0 1 Y N N 45.850 56.301 -37.811 -3.944 -3.622 0.133 C4 8W7 4
8W7 C5 C5 C 0 1 Y N N 46.189 54.974 -38.067 -3.999 -2.230 0.044 C5 8W7 5
8W7 C6 C6 C 0 1 Y N N 47.524 54.639 -38.246 -2.812 -1.495 0.044 C6 8W7 6
8W7 N1 N1 N 0 1 N N N 46.215 52.745 -38.429 -4.674 -0.021 -0.110 N1 8W7 7
8W7 N2 N2 N 0 1 N N N 46.751 49.123 -37.876 -4.018 3.082 -0.786 N2 8W7 8
8W7 N3 N3 N 0 1 N N N 52.110 56.375 -31.640 6.500 0.772 0.222 N3 8W7 9
8W7 O1 O1 O 0 1 N N N 44.215 53.752 -38.073 -6.301 -1.604 -0.081 O1 8W7 10
8W7 C7 C7 C 0 1 N N N 47.624 53.143 -38.500 -3.208 -0.044 -0.060 C7 8W7 11
8W7 C8 C8 C 0 1 N N N 45.439 53.803 -38.188 -5.128 -1.285 -0.058 C8 8W7 12
8W7 C9 C9 C 0 1 N N S 45.746 51.361 -38.589 -5.506 1.181 -0.203 C9 8W7 13
8W7 C10 C10 C 0 1 N N N 46.037 50.876 -40.006 -5.593 1.851 1.173 C10 8W7 14
8W7 C11 C11 C 0 1 N N N 45.664 49.402 -40.156 -4.201 2.334 1.575 C11 8W7 15
8W7 C12 C12 C 0 1 N N N 46.382 48.560 -39.103 -3.653 3.231 0.496 C12 8W7 16
8W7 C13 C13 C 0 1 N N N 46.470 50.464 -37.579 -4.892 2.145 -1.184 C13 8W7 17
8W7 C14 C14 C 0 1 N N N 50.815 56.111 -37.893 0.782 -2.155 0.206 C14 8W7 18
8W7 C15 C15 C 0 1 Y N N 51.339 56.006 -36.606 1.946 -1.197 0.186 C15 8W7 19
8W7 O2 O2 O 0 1 N N N 46.805 50.921 -36.488 -5.192 2.072 -2.356 O2 8W7 20
8W7 C22 C16 C 0 1 N N N 52.218 55.738 -30.316 6.714 -0.049 -0.979 C22 8W7 21
8W7 C23 C17 C 0 1 N N N 51.304 56.472 -29.328 8.004 -0.857 -0.814 C23 8W7 22
8W7 O5 O3 O 0 1 N N N 51.619 57.881 -29.265 9.093 0.038 -0.569 O5 8W7 23
8W7 C24 C18 C 0 1 N N N 51.523 58.492 -30.565 8.917 0.853 0.593 C24 8W7 24
8W7 C25 C19 C 0 1 N N N 52.504 57.787 -31.504 7.636 1.678 0.443 C25 8W7 25
8W7 C21 C20 C 0 1 N N N 52.979 55.688 -32.615 5.240 1.522 0.129 C21 8W7 26
8W7 C20 C21 C 0 1 Y N N 52.396 55.795 -34.032 4.080 0.559 0.150 C20 8W7 27
8W7 C19 C22 C 0 1 Y N N 52.255 54.660 -34.824 3.506 0.195 1.353 C19 8W7 28
8W7 C17 C23 C 0 1 Y N N 51.728 54.763 -36.107 2.439 -0.684 1.371 C17 8W7 29
8W7 C18 C24 C 0 1 Y N N 52.009 57.032 -34.539 3.590 0.042 -1.035 C18 8W7 30
8W7 C16 C25 C 0 1 Y N N 51.482 57.146 -35.820 2.523 -0.836 -1.016 C16 8W7 31
8W7 O4 O4 O 0 1 N N N 49.829 55.182 -38.371 -0.441 -1.421 0.119 O4 8W7 32
8W7 O3 O5 O 0 1 N N N 46.639 47.381 -39.333 -2.867 4.104 0.793 O3 8W7 33
8W7 H1 H1 H 0 1 N N N 46.594 58.294 -37.550 -2.682 -5.336 0.287 H1 8W7 34
8W7 H2 H2 H 0 1 N N N 48.952 57.666 -37.876 -0.598 -4.032 0.276 H2 8W7 35
8W7 H3 H3 H 0 1 N N N 44.817 56.580 -37.665 -4.856 -4.200 0.133 H3 8W7 36
8W7 H4 H4 H 0 1 N N N 47.224 48.559 -37.199 -3.639 3.678 -1.451 H4 8W7 37
8W7 H6 H6 H 0 1 N N N 48.223 52.642 -37.725 -2.855 0.497 0.819 H6 8W7 38
8W7 H7 H7 H 0 1 N N N 48.053 52.930 -39.490 -2.795 0.401 -0.965 H7 8W7 39
8W7 H8 H8 H 0 1 N N N 44.663 51.309 -38.405 -6.506 0.907 -0.539 H8 8W7 40
8W7 H9 H9 H 0 1 N N N 47.109 51.001 -40.218 -6.269 2.705 1.122 H9 8W7 41
8W7 H10 H10 H 0 1 N N N 45.450 51.472 -40.720 -5.963 1.135 1.906 H10 8W7 42
8W7 H11 H11 H 0 1 N N N 44.577 49.289 -40.031 -4.264 2.882 2.515 H11 8W7 43
8W7 H12 H12 H 0 1 N N N 45.956 49.055 -41.158 -3.539 1.477 1.695 H12 8W7 44
8W7 H13 H13 H 0 1 N N N 51.668 56.044 -38.584 0.858 -2.836 -0.641 H13 8W7 45
8W7 H14 H14 H 0 1 N N N 50.363 57.111 -37.965 0.798 -2.726 1.135 H14 8W7 46
8W7 H15 H15 H 0 1 N N N 51.911 54.684 -30.388 5.873 -0.730 -1.109 H15 8W7 47
8W7 H16 H16 H 0 1 N N N 53.259 55.793 -29.965 6.798 0.598 -1.852 H16 8W7 48
8W7 H17 H17 H 0 1 N N N 50.259 56.353 -29.651 7.900 -1.542 0.027 H17 8W7 49
8W7 H18 H18 H 0 1 N N N 51.431 56.032 -28.328 8.197 -1.423 -1.725 H18 8W7 50
8W7 H19 H19 H 0 1 N N N 51.779 59.559 -30.494 8.840 0.217 1.475 H19 8W7 51
8W7 H20 H20 H 0 1 N N N 50.498 58.386 -30.951 9.771 1.522 0.701 H20 8W7 52
8W7 H21 H21 H 0 1 N N N 53.520 57.847 -31.088 7.735 2.352 -0.407 H21 8W7 53
8W7 H22 H22 H 0 1 N N N 52.483 58.272 -32.491 7.469 2.257 1.351 H22 8W7 54
8W7 H23 H23 H 0 1 N N N 53.063 54.627 -32.338 5.160 2.205 0.975 H23 8W7 55
8W7 H24 H24 H 0 1 N N N 53.976 56.151 -32.599 5.223 2.091 -0.800 H24 8W7 56
8W7 H25 H25 H 0 1 N N N 52.556 53.696 -34.441 3.888 0.599 2.279 H25 8W7 57
8W7 H26 H26 H 0 1 N N N 51.620 53.879 -36.718 1.990 -0.969 2.312 H26 8W7 58
8W7 H27 H27 H 0 1 N N N 52.120 57.916 -33.928 4.039 0.327 -1.975 H27 8W7 59
8W7 H28 H28 H 0 1 N N N 51.186 58.112 -36.203 2.141 -1.241 -1.942 H28 8W7 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8W7 C11 C10 SING N N 1
8W7 C11 C12 SING N N 2
8W7 C10 C9 SING N N 3
8W7 O3 C12 DOUB N N 4
8W7 C12 N2 SING N N 5
8W7 C9 N1 SING N N 6
8W7 C9 C13 SING N N 7
8W7 C7 N1 SING N N 8
8W7 C7 C6 SING N N 9
8W7 N1 C8 SING N N 10
8W7 O4 C3 SING N N 11
8W7 O4 C14 SING N N 12
8W7 C6 C3 DOUB Y N 13
8W7 C6 C5 SING Y N 14
8W7 C8 O1 DOUB N N 15
8W7 C8 C5 SING N N 16
8W7 C3 C2 SING Y N 17
8W7 C5 C4 DOUB Y N 18
8W7 C2 C1 DOUB Y N 19
8W7 C14 C15 SING N N 20
8W7 N2 C13 SING N N 21
8W7 C4 C1 SING Y N 22
8W7 C13 O2 DOUB N N 23
8W7 C15 C17 DOUB Y N 24
8W7 C15 C16 SING Y N 25
8W7 C17 C19 SING Y N 26
8W7 C16 C18 DOUB Y N 27
8W7 C19 C20 DOUB Y N 28
8W7 C18 C20 SING Y N 29
8W7 C20 C21 SING N N 30
8W7 C21 N3 SING N N 31
8W7 N3 C25 SING N N 32
8W7 N3 C22 SING N N 33
8W7 C25 C24 SING N N 34
8W7 C24 O5 SING N N 35
8W7 C22 C23 SING N N 36
8W7 C23 O5 SING N N 37
8W7 C1 H1 SING N N 38
8W7 C2 H2 SING N N 39
8W7 C4 H3 SING N N 40
8W7 N2 H4 SING N N 41
8W7 C7 H6 SING N N 42
8W7 C7 H7 SING N N 43
8W7 C9 H8 SING N N 44
8W7 C10 H9 SING N N 45
8W7 C10 H10 SING N N 46
8W7 C11 H11 SING N N 47
8W7 C11 H12 SING N N 48
8W7 C14 H13 SING N N 49
8W7 C14 H14 SING N N 50
8W7 C22 H15 SING N N 51
8W7 C22 H16 SING N N 52
8W7 C23 H17 SING N N 53
8W7 C23 H18 SING N N 54
8W7 C24 H19 SING N N 55
8W7 C24 H20 SING N N 56
8W7 C25 H21 SING N N 57
8W7 C25 H22 SING N N 58
8W7 C21 H23 SING N N 59
8W7 C21 H24 SING N N 60
8W7 C19 H25 SING N N 61
8W7 C17 H26 SING N N 62
8W7 C18 H27 SING N N 63
8W7 C16 H28 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8W7 SMILES ACDLabs 12.01 "c1cc(c2c(c1)C(N(C2)C3C(NC(CC3)=O)=O)=O)OCc5ccc(CN4CCOCC4)cc5"
8W7 InChI InChI 1.03 "InChI=1S/C25H27N3O5/c29-23-9-8-21(24(30)26-23)28-15-20-19(25(28)31)2-1-3-22(20)33-16-18-6-4-17(5-7-18)14-27-10-12-32-13-11-27/h1-7,21H,8-16H2,(H,26,29,30)/t21-/m0/s1"
8W7 InChIKey InChI 1.03 IXZOHGPZAQLIBH-NRFANRHFSA-N
8W7 SMILES_CANONICAL CACTVS 3.385 "O=C1CC[C@H](N2Cc3c(OCc4ccc(CN5CCOCC5)cc4)cccc3C2=O)C(=O)N1"
8W7 SMILES CACTVS 3.385 "O=C1CC[CH](N2Cc3c(OCc4ccc(CN5CCOCC5)cc4)cccc3C2=O)C(=O)N1"
8W7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc2c(c(c1)OCc3ccc(cc3)CN4CCOCC4)CN(C2=O)[C@H]5CCC(=O)NC5=O"
8W7 SMILES "OpenEye OEToolkits" 2.0.6 "c1cc2c(c(c1)OCc3ccc(cc3)CN4CCOCC4)CN(C2=O)C5CCC(=O)NC5=O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8W7 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-[4-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1-oxo-1,3-dihydro-2H-isoindol-2-yl]piperidine-2,6-dione"
8W7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{S})-3-[7-[[4-(morpholin-4-ylmethyl)phenyl]methoxy]-3-oxidanylidene-1~{H}-isoindol-2-yl]piperidine-2,6-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8W7 "Create component" 2017-03-08 RCSB
8W7 "Initial release" 2017-05-03 RCSB
#