data_8WE # _chem_comp.id 8WE _chem_comp.name "(2~{Z},4~{E})-~{N}-[(~{S})-oxidanyl-[(1~{S},2~{E},5~{S},11~{R},17~{S},19~{R})-3,11,19-trimethyl-7,13-bis(oxidanylidene)-6,21-dioxabicyclo[15.3.1]henicos-2-en-5-yl]methyl]hexa-2,4-dienamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H45 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-03-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.671 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8WE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5NG1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8WE C1 C1 C 0 1 N N N N N N -2.088 61.289 26.016 1.871 0.068 -2.450 C1 8WE 1 8WE O1 O1 O 0 1 N N N N N N -1.392 60.292 25.808 2.942 0.593 -2.641 O1 8WE 2 8WE C2 C2 C 0 1 N N N N N N -2.845 61.971 24.974 1.659 -1.359 -2.881 C2 8WE 3 8WE C3 C3 C 0 1 N N N N N N -2.299 62.303 23.796 2.344 -2.316 -1.904 C3 8WE 4 8WE C4 C4 C 0 1 N N N N N N -3.138 62.706 22.679 1.517 -3.585 -1.754 C4 8WE 5 8WE C5 C5 C 0 1 N N R N N N -2.697 62.781 21.422 0.588 -3.559 -0.546 C5 8WE 6 8WE C21 C6 C 0 1 N N N N N N -2.923 64.067 20.685 0.224 -2.134 -0.142 C21 8WE 7 8WE C6 C7 C 0 1 N N N N N N -1.583 61.893 20.923 -0.696 -4.323 -0.895 C6 8WE 8 8WE C7 C8 C 0 1 N N N N N N -0.341 62.712 20.759 -1.747 -4.076 0.156 C7 8WE 9 8WE O7 O2 O 0 1 N N N N N N 0.140 62.855 19.653 -1.510 -4.304 1.319 O7 8WE 10 8WE C8 C9 C 0 1 N N N N N N -0.082 63.747 21.815 -3.105 -3.554 -0.242 C8 8WE 11 8WE C9 C10 C 0 1 N N N N N N 1.299 63.575 22.443 -3.181 -2.050 0.029 C9 8WE 12 8WE C10 C11 C 0 1 N N N N N N 1.594 64.790 23.324 -4.595 -1.684 0.480 C10 8WE 13 8WE C11 C12 C 0 1 N N S N N N 2.239 64.375 24.644 -4.817 -0.180 0.320 C11 8WE 14 8WE C12 C13 C 0 1 N N N N N N 3.032 65.568 25.154 -5.039 0.455 1.695 C12 8WE 15 8WE C13 C14 C 0 1 N N R N N N 3.484 65.321 26.569 -5.245 1.962 1.528 C13 8WE 16 8WE C22 C15 C 0 1 N N N N N N 4.566 65.951 27.025 -5.374 2.614 2.907 C22 8WE 17 8WE C14 C16 C 0 1 N N N N N N 2.433 64.799 27.515 -4.043 2.565 0.794 C14 8WE 18 8WE C15 C17 C 0 1 N N S N N N 1.665 63.642 26.863 -3.814 1.823 -0.521 C15 8WE 19 8WE O11 O3 O 0 1 N N N N N N 1.216 64.008 25.564 -3.673 0.422 -0.291 O11 8WE 20 8WE C16 C18 C 0 1 N N N N N N 0.456 63.321 27.683 -2.639 2.388 -1.256 C16 8WE 21 8WE C17 C19 C 0 1 N N N N N N 0.167 62.098 28.096 -1.383 2.222 -0.913 C17 8WE 22 8WE C23 C20 C 0 1 N N N N N N 1.139 60.957 27.935 -1.014 1.401 0.290 C23 8WE 23 8WE C18 C21 C 0 1 N N N N N N -1.030 61.837 28.959 -0.339 2.899 -1.758 C18 8WE 24 8WE C19 C22 C 0 1 N N S N N N -1.977 60.811 28.312 1.004 2.191 -1.788 C19 8WE 25 8WE O19 O4 O 0 1 N N N N N N -2.648 61.401 27.216 0.864 0.756 -1.887 O19 8WE 26 8WE C20 C23 C 0 1 N N S N N N -3.068 60.424 29.307 1.855 2.582 -0.579 C20 8WE 27 8WE O20 O5 O 0 1 N N N N N N -3.896 59.375 28.808 1.984 4.004 -0.526 O20 8WE 28 8WE N20 N1 N 0 1 N N N N N N -3.903 61.622 29.533 3.183 1.975 -0.700 N20 8WE 29 8WE "C1'" C24 C 0 1 N N N N N N -4.576 61.763 30.694 3.732 1.339 0.354 "C1'" 8WE 30 8WE "O1'" O6 O 0 1 N N N N N N -4.633 60.787 31.466 3.124 1.269 1.407 "O1'" 8WE 31 8WE "C2'" C25 C 0 1 N N N N N N -5.204 63.079 30.852 5.057 0.733 0.234 "C2'" 8WE 32 8WE "C3'" C26 C 0 1 N N N N N N -6.052 63.402 31.861 5.558 -0.005 1.250 "C3'" 8WE 33 8WE "C4'" C27 C 0 1 N N N N N N -6.473 62.464 32.897 4.839 -0.083 2.522 "C4'" 8WE 34 8WE "C5'" C28 C 0 1 N N N N N N -7.039 62.850 34.060 5.386 -0.718 3.560 "C5'" 8WE 35 8WE "C6'" C29 C 0 1 N N N N N N -7.367 61.872 35.156 4.645 -0.798 4.869 "C6'" 8WE 36 8WE H21 H1 H 0 1 N N N N N N -3.205 62.909 25.421 0.592 -1.574 -2.923 H21 8WE 37 8WE H1 H2 H 0 1 N N N N N N -3.703 61.322 24.743 2.088 -1.497 -3.877 H1 8WE 38 8WE H31 H3 H 0 1 N N N N N N -1.724 61.428 23.458 3.321 -2.596 -2.341 H31 8WE 39 8WE H2 H4 H 0 1 N N N N N N -1.613 63.140 23.992 2.551 -1.834 -0.959 H2 8WE 40 8WE H41 H5 H 0 1 N N N N N N -3.511 63.710 22.928 0.919 -3.733 -2.662 H41 8WE 41 8WE H3 H6 H 0 1 N N N N N N -3.979 61.997 22.662 2.194 -4.443 -1.663 H3 8WE 42 8WE H4 H7 H 0 1 N N N N N N -3.520 62.222 20.952 1.074 -4.059 0.296 H4 8WE 43 8WE H211 H8 H 0 0 N N N N N N -3.757 64.614 21.148 -0.280 -1.639 -0.973 H211 8WE 44 8WE H213 H9 H 0 0 N N N N N N -2.012 64.681 20.731 -0.439 -2.160 0.722 H213 8WE 45 8WE H212 H10 H 0 0 N N N N N N -3.166 63.850 19.634 1.131 -1.585 0.111 H212 8WE 46 8WE H61 H11 H 0 1 N N N N N N -1.866 61.455 19.954 -1.064 -3.977 -1.864 H61 8WE 47 8WE H62 H12 H 0 1 N N N N N N -1.400 61.088 21.650 -0.479 -5.388 -0.952 H62 8WE 48 8WE H81 H13 H 0 1 N N N N N N -0.145 64.746 21.359 -3.265 -3.738 -1.306 H81 8WE 49 8WE H82 H14 H 0 1 N N N N N N -0.846 63.654 22.601 -3.873 -4.067 0.335 H82 8WE 50 8WE H91 H15 H 0 1 N N N N N N 1.316 62.661 23.055 -2.475 -1.785 0.816 H91 8WE 51 8WE H5 H16 H 0 1 N N N N N N 2.059 63.499 21.651 -2.935 -1.508 -0.884 H5 8WE 52 8WE H162 H17 H 0 0 N N N N N N 2.278 65.464 22.787 -5.324 -2.225 -0.125 H162 8WE 53 8WE H102 H18 H 0 0 N N N N N N 0.652 65.316 23.536 -4.724 -1.959 1.528 H102 8WE 54 8WE H141 H19 H 0 0 N N N N N N 2.923 63.532 24.465 -5.695 -0.004 -0.303 H141 8WE 55 8WE H142 H20 H 0 0 N N N N N N 3.912 65.721 24.512 -5.919 0.017 2.162 H142 8WE 56 8WE H151 H21 H 0 0 N N N N N N 2.397 66.466 25.126 -4.165 0.276 2.322 H151 8WE 57 8WE H6 H22 H 0 1 N N N N N N 3.964 64.350 26.375 -6.152 2.146 0.953 H6 8WE 58 8WE H223 H23 H 0 0 N N N N N N 4.750 65.656 28.069 -4.466 2.432 3.482 H223 8WE 59 8WE H7 H24 H 0 1 N N N N N N 5.435 65.679 26.408 -5.521 3.688 2.790 H7 8WE 60 8WE H222 H25 H 0 0 N N N N N N 4.406 67.038 26.974 -6.228 2.186 3.433 H222 8WE 61 8WE H121 H26 H 0 0 N N N N N N 2.917 64.441 28.436 -4.247 3.617 0.581 H121 8WE 62 8WE H122 H27 H 0 0 N N N N N N 1.731 65.609 27.761 -3.163 2.496 1.430 H122 8WE 63 8WE H111 H28 H 0 0 N N N N N N 2.320 62.760 26.812 -4.711 1.967 -1.148 H111 8WE 64 8WE H101 H29 H 0 0 N N N N N N -0.213 64.126 27.951 -2.829 2.990 -2.149 H101 8WE 65 8WE H231 H30 H 0 0 N N N N N N 0.696 60.037 28.345 -1.919 1.018 0.761 H231 8WE 66 8WE H232 H31 H 0 0 N N N N N N 1.361 60.813 26.867 -0.384 0.566 -0.018 H232 8WE 67 8WE H233 H32 H 0 0 N N N N N N 2.069 61.189 28.475 -0.470 2.023 1.002 H233 8WE 68 8WE H181 H33 H 0 0 N N N N N N -0.692 61.449 29.931 -0.724 2.973 -2.785 H181 8WE 69 8WE H182 H34 H 0 0 N N N N N N -1.575 62.781 29.110 -0.201 3.924 -1.392 H182 8WE 70 8WE H191 H35 H 0 0 N N N N N N -1.410 59.918 28.009 1.545 2.532 -2.692 H191 8WE 71 8WE H201 H36 H 0 0 N N N N N N -2.596 60.120 30.253 1.375 2.226 0.333 H201 8WE 72 8WE H202 H37 H 0 0 N N N N N N -4.561 59.162 29.452 2.404 4.390 -1.307 H202 8WE 73 8WE H203 H38 H 0 0 N N N N N N -3.969 62.327 28.827 3.667 2.030 -1.538 H203 8WE 74 8WE "H2'1" H39 H 0 0 N N N N N N -4.977 63.839 30.119 5.636 0.875 -0.667 "H2'1" 8WE 75 8WE "H3'1" H40 H 0 0 N N N N N N -6.437 64.410 31.900 6.490 -0.537 1.122 "H3'1" 8WE 76 8WE "H4'1" H41 H 0 0 N N N N N N -6.324 61.408 32.724 3.865 0.373 2.620 "H4'1" 8WE 77 8WE H8 H42 H 0 1 N N N N N N -7.264 63.896 34.209 6.360 -1.174 3.461 H8 8WE 78 8WE H9 H43 H 0 1 N N N N N N -7.819 62.408 36.004 4.459 0.208 5.244 H9 8WE 79 8WE H10 H44 H 0 1 N N N N N N -8.076 61.121 34.777 3.695 -1.311 4.718 H10 8WE 80 8WE H11 H45 H 0 1 N N N N N N -6.446 61.371 35.488 5.245 -1.350 5.593 H11 8WE 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8WE O7 C7 DOUB N N 1 8WE C21 C5 SING N N 2 8WE C7 C6 SING N N 3 8WE C7 C8 SING N N 4 8WE C6 C5 SING N N 5 8WE C5 C4 SING N N 6 8WE C8 C9 SING N N 7 8WE C9 C10 SING N N 8 8WE C4 C3 SING N N 9 8WE C10 C11 SING N N 10 8WE C3 C2 SING N N 11 8WE C11 C12 SING N N 12 8WE C11 O11 SING N N 13 8WE C2 C1 SING N N 14 8WE C12 C13 SING N N 15 8WE O11 C15 SING N N 16 8WE O1 C1 DOUB N N 17 8WE C1 O19 SING N N 18 8WE C13 C22 SING N N 19 8WE C13 C14 SING N N 20 8WE C15 C14 SING N N 21 8WE C15 C16 SING N N 22 8WE O19 C19 SING N N 23 8WE C16 C17 DOUB N E 24 8WE C23 C17 SING N N 25 8WE C17 C18 SING N N 26 8WE C19 C18 SING N N 27 8WE C19 C20 SING N N 28 8WE O20 C20 SING N N 29 8WE C20 N20 SING N N 30 8WE N20 "C1'" SING N N 31 8WE "C1'" "C2'" SING N N 32 8WE "C1'" "O1'" DOUB N N 33 8WE "C2'" "C3'" DOUB N Z 34 8WE "C3'" "C4'" SING N N 35 8WE "C4'" "C5'" DOUB N E 36 8WE "C5'" "C6'" SING N N 37 8WE C2 H21 SING N N 38 8WE C2 H1 SING N N 39 8WE C3 H31 SING N N 40 8WE C3 H2 SING N N 41 8WE C4 H41 SING N N 42 8WE C4 H3 SING N N 43 8WE C5 H4 SING N N 44 8WE C21 H211 SING N N 45 8WE C21 H213 SING N N 46 8WE C21 H212 SING N N 47 8WE C6 H61 SING N N 48 8WE C6 H62 SING N N 49 8WE C8 H81 SING N N 50 8WE C8 H82 SING N N 51 8WE C9 H91 SING N N 52 8WE C9 H5 SING N N 53 8WE C10 H162 SING N N 54 8WE C10 H102 SING N N 55 8WE C11 H141 SING N N 56 8WE C12 H142 SING N N 57 8WE C12 H151 SING N N 58 8WE C13 H6 SING N N 59 8WE C22 H223 SING N N 60 8WE C22 H7 SING N N 61 8WE C22 H222 SING N N 62 8WE C14 H121 SING N N 63 8WE C14 H122 SING N N 64 8WE C15 H111 SING N N 65 8WE C16 H101 SING N N 66 8WE C23 H231 SING N N 67 8WE C23 H232 SING N N 68 8WE C23 H233 SING N N 69 8WE C18 H181 SING N N 70 8WE C18 H182 SING N N 71 8WE C19 H191 SING N N 72 8WE C20 H201 SING N N 73 8WE O20 H202 SING N N 74 8WE N20 H203 SING N N 75 8WE "C2'" "H2'1" SING N N 76 8WE "C3'" "H3'1" SING N N 77 8WE "C4'" "H4'1" SING N N 78 8WE "C5'" H8 SING N N 79 8WE "C6'" H9 SING N N 80 8WE "C6'" H10 SING N N 81 8WE "C6'" H11 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8WE InChI InChI 1.03 "InChI=1S/C29H45NO6/c1-5-6-7-13-27(32)30-29(34)26-19-22(4)18-25-17-21(3)16-24(35-25)12-9-11-23(31)15-20(2)10-8-14-28(33)36-26/h5-7,13,18,20-21,24-26,29,34H,8-12,14-17,19H2,1-4H3,(H,30,32)/b6-5+,13-7-,22-18+/t20-,21-,24+,25+,26+,29+/m1/s1" 8WE InChIKey InChI 1.03 WSHDEXCLDGAKJW-NFPHSYLMSA-N 8WE SMILES_CANONICAL CACTVS 3.385 "C\C=C\C=C/C(=O)N[C@@H](O)[C@@H]1CC(=C/[C@@H]2C[C@H](C)C[C@H](CCCC(=O)C[C@H](C)CCCC(=O)O1)O2)/C" 8WE SMILES CACTVS 3.385 "CC=CC=CC(=O)N[CH](O)[CH]1CC(=C[CH]2C[CH](C)C[CH](CCCC(=O)C[CH](C)CCCC(=O)O1)O2)C" 8WE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C/C=C/C=C\C(=O)N[C@H]([C@@H]1C/C(=C/[C@@H]2C[C@@H](C[C@@H](O2)CCCC(=O)C[C@@H](CCCC(=O)O1)C)C)/C)O" 8WE SMILES "OpenEye OEToolkits" 2.0.6 "CC=CC=CC(=O)NC(C1CC(=CC2CC(CC(O2)CCCC(=O)CC(CCCC(=O)O1)C)C)C)O" # _pdbx_chem_comp_identifier.comp_id 8WE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(2~{Z},4~{E})-~{N}-[(~{S})-oxidanyl-[(1~{S},2~{E},5~{S},11~{R},17~{S},19~{R})-3,11,19-trimethyl-7,13-bis(oxidanylidene)-6,21-dioxabicyclo[15.3.1]henicos-2-en-5-yl]methyl]hexa-2,4-dienamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8WE "Create component" 2017-03-16 EBI 8WE "Initial release" 2017-10-25 RCSB 8WE "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 8WE _pdbx_chem_comp_pcm.modified_residue_id HIS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #