data_8YC # _chem_comp.id 8YC _chem_comp.name "(2S,5R)-1-[2-[[1-(hydroxymethyl)cyclopentyl]amino]ethanoyl]pyrrolidine-2,5-dicarbonitrile" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H20 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-11-08 _chem_comp.pdbx_modified_date 2018-02-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 276.334 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8YC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5YP2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8YC O1 O1 O 0 1 N N N 23.816 9.068 24.913 0.592 -1.884 -0.467 O1 8YC 1 8YC C5 C1 C 0 1 N N N 24.968 9.457 24.801 0.699 -0.786 0.038 C5 8YC 2 8YC N1 N1 N 0 1 N N N 25.521 10.420 25.589 1.903 -0.353 0.460 N1 8YC 3 8YC C1 C2 C 0 1 N N R 26.960 10.638 25.704 3.164 -1.104 0.370 C1 8YC 4 8YC C6 C3 C 0 1 N N N 27.317 11.633 24.729 3.484 -1.377 -1.040 C6 8YC 5 8YC N2 N2 N 0 1 N N N 27.571 12.431 23.967 3.731 -1.588 -2.129 N2 8YC 6 8YC C3 C4 C 0 1 N N N 27.128 11.173 27.137 4.266 -0.225 0.998 C3 8YC 7 8YC C4 C5 C 0 1 N N N 25.825 11.885 27.420 3.465 0.735 1.917 C4 8YC 8 8YC C2 C6 C 0 1 N N S 24.760 11.307 26.464 2.176 0.956 1.082 C2 8YC 9 8YC C7 C7 C 0 1 N N N 24.052 12.372 25.726 2.400 1.978 0.048 C7 8YC 10 8YC N3 N3 N 0 1 N N N 24.544 12.919 24.844 2.574 2.768 -0.751 N3 8YC 11 8YC C8 C8 C 0 1 N N N 25.884 8.820 23.739 -0.514 0.096 0.188 C8 8YC 12 8YC N4 N4 N 0 1 N N N 25.201 7.906 22.812 -1.693 -0.597 -0.350 N4 8YC 13 8YC C9 C9 C 0 1 N N N 24.680 8.554 21.581 -2.915 0.181 -0.112 C9 8YC 14 8YC C14 C10 C 0 1 N N N 23.758 9.793 21.807 -2.775 1.577 -0.723 C14 8YC 15 8YC O2 O2 O 0 1 N N N 24.392 11.062 22.032 -2.444 1.459 -2.108 O2 8YC 16 8YC C10 C11 C 0 1 N N N 23.894 7.473 20.827 -3.184 0.292 1.400 C10 8YC 17 8YC C11 C12 C 0 1 N N N 24.217 7.587 19.327 -4.554 -0.369 1.653 C11 8YC 18 8YC C12 C13 C 0 1 N N N 25.437 8.492 19.234 -4.734 -1.341 0.461 C12 8YC 19 8YC C13 C14 C 0 1 N N N 25.881 8.808 20.675 -4.131 -0.544 -0.724 C13 8YC 20 8YC H1 H1 H 0 1 N N N 27.526 9.705 25.570 3.077 -2.040 0.921 H1 8YC 21 8YC H2 H2 H 0 1 N N N 27.284 10.347 27.846 4.956 -0.833 1.584 H2 8YC 22 8YC H3 H3 H 0 1 N N N 27.976 11.872 27.196 4.799 0.333 0.229 H3 8YC 23 8YC H4 H4 H 0 1 N N N 25.941 12.964 27.243 3.239 0.263 2.873 H4 8YC 24 8YC H5 H5 H 0 1 N N N 25.524 11.715 28.464 4.000 1.673 2.063 H5 8YC 25 8YC H6 H6 H 0 1 N N N 24.037 10.722 27.052 1.349 1.247 1.731 H6 8YC 26 8YC H9 H9 H 0 1 N N N 26.672 8.256 24.259 -0.674 0.318 1.243 H9 8YC 27 8YC H10 H10 H 0 1 N N N 26.340 9.629 23.150 -0.358 1.025 -0.360 H10 8YC 28 8YC H11 H11 H 0 1 N N N 24.431 7.489 23.295 -1.774 -1.526 0.037 H11 8YC 29 8YC H13 H13 H 0 1 N N N 23.122 9.897 20.916 -3.717 2.115 -0.618 H13 8YC 30 8YC H14 H14 H 0 1 N N N 23.129 9.579 22.684 -1.986 2.122 -0.205 H14 8YC 31 8YC H15 H15 H 0 1 N N N 23.728 11.731 22.155 -2.339 2.307 -2.560 H15 8YC 32 8YC H16 H16 H 0 1 N N N 22.816 7.620 20.986 -2.407 -0.233 1.956 H16 8YC 33 8YC H17 H17 H 0 1 N N N 24.186 6.478 21.194 -3.213 1.340 1.698 H17 8YC 34 8YC H18 H18 H 0 1 N N N 23.369 8.030 18.785 -4.544 -0.919 2.595 H18 8YC 35 8YC H19 H19 H 0 1 N N N 24.442 6.596 18.907 -5.345 0.381 1.660 H19 8YC 36 8YC H20 H20 H 0 1 N N N 26.247 7.979 18.694 -4.179 -2.264 0.627 H20 8YC 37 8YC H21 H21 H 0 1 N N N 25.177 9.422 18.707 -5.790 -1.550 0.289 H21 8YC 38 8YC H22 H22 H 0 1 N N N 26.717 8.154 20.964 -4.854 0.178 -1.105 H22 8YC 39 8YC H23 H23 H 0 1 N N N 26.195 9.859 20.751 -3.814 -1.221 -1.517 H23 8YC 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8YC C12 C11 SING N N 1 8YC C12 C13 SING N N 2 8YC C11 C10 SING N N 3 8YC C13 C9 SING N N 4 8YC C10 C9 SING N N 5 8YC C9 C14 SING N N 6 8YC C9 N4 SING N N 7 8YC C14 O2 SING N N 8 8YC N4 C8 SING N N 9 8YC C8 C5 SING N N 10 8YC N2 C6 TRIP N N 11 8YC C6 C1 SING N N 12 8YC C5 O1 DOUB N N 13 8YC C5 N1 SING N N 14 8YC N3 C7 TRIP N N 15 8YC N1 C1 SING N N 16 8YC N1 C2 SING N N 17 8YC C1 C3 SING N N 18 8YC C7 C2 SING N N 19 8YC C2 C4 SING N N 20 8YC C3 C4 SING N N 21 8YC C1 H1 SING N N 22 8YC C3 H2 SING N N 23 8YC C3 H3 SING N N 24 8YC C4 H4 SING N N 25 8YC C4 H5 SING N N 26 8YC C2 H6 SING N N 27 8YC C8 H9 SING N N 28 8YC C8 H10 SING N N 29 8YC N4 H11 SING N N 30 8YC C14 H13 SING N N 31 8YC C14 H14 SING N N 32 8YC O2 H15 SING N N 33 8YC C10 H16 SING N N 34 8YC C10 H17 SING N N 35 8YC C11 H18 SING N N 36 8YC C11 H19 SING N N 37 8YC C12 H20 SING N N 38 8YC C12 H21 SING N N 39 8YC C13 H22 SING N N 40 8YC C13 H23 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8YC InChI InChI 1.03 "InChI=1S/C14H20N4O2/c15-7-11-3-4-12(8-16)18(11)13(20)9-17-14(10-19)5-1-2-6-14/h11-12,17,19H,1-6,9-10H2/t11-,12+" 8YC InChIKey InChI 1.03 VZOVKVCGZDERPK-TXEJJXNPSA-N 8YC SMILES_CANONICAL CACTVS 3.385 "OCC1(CCCC1)NCC(=O)N2[C@H](CC[C@H]2C#N)C#N" 8YC SMILES CACTVS 3.385 "OCC1(CCCC1)NCC(=O)N2[CH](CC[CH]2C#N)C#N" 8YC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1CCC(C1)(CO)NCC(=O)N2[C@H](CC[C@H]2C#N)C#N" 8YC SMILES "OpenEye OEToolkits" 2.0.6 "C1CCC(C1)(CO)NCC(=O)N2C(CCC2C#N)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8YC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S},5~{R})-1-[2-[[1-(hydroxymethyl)cyclopentyl]amino]ethanoyl]pyrrolidine-2,5-dicarbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8YC "Create component" 2017-11-08 PDBJ 8YC "Initial release" 2018-02-21 RCSB #