data_8YQ # _chem_comp.id 8YQ _chem_comp.name "(2~{R},3~{R},5~{R})-2-[[2-[[3-(aminomethyl)phenyl]methoxy]-4-[[3-(1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-chloranyl-phenyl]methyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C36 H35 Cl N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-03-27 _chem_comp.pdbx_modified_date 2017-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 643.125 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8YQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5NIX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8YQ C14 C1 C 0 1 Y N N -3.366 61.513 -19.048 5.368 -1.271 -0.270 C14 8YQ 1 8YQ C13 C2 C 0 1 N N N -5.169 60.416 -20.396 3.779 0.667 -0.075 C13 8YQ 2 8YQ C15 C3 C 0 1 Y N N -2.367 61.425 -20.210 6.486 -0.303 -0.386 C15 8YQ 3 8YQ C17 C4 C 0 1 Y N N -0.450 60.502 -21.154 8.658 0.456 0.303 C17 8YQ 4 8YQ C16 C5 C 0 1 Y N N -1.340 60.559 -20.085 7.620 -0.447 0.415 C16 8YQ 5 8YQ C8 C6 C 0 1 Y N N -9.823 60.340 -17.648 -1.038 -0.753 0.432 C8 8YQ 6 8YQ C10 C7 C 0 1 N N N -7.000 60.751 -17.987 1.607 -1.224 0.139 C10 8YQ 7 8YQ C9 C8 C 0 1 Y N N -9.135 61.442 -17.070 -0.604 -2.068 0.370 C9 8YQ 8 8YQ N1 N1 N 0 1 N N N -13.672 63.172 -17.700 -5.345 -2.217 -1.339 N1 8YQ 9 8YQ C12 C9 C 0 1 Y N N -4.681 61.054 -19.116 4.060 -0.813 -0.122 C12 8YQ 10 8YQ C11 C10 C 0 1 Y N N -5.542 61.205 -18.021 3.022 -1.718 -0.020 C11 8YQ 11 8YQ O3 O1 O 0 1 N N N 0.592 59.657 -21.017 9.772 0.333 1.074 O3 8YQ 12 8YQ C1 C11 C 0 1 Y N N -13.642 55.521 -20.644 -3.513 5.059 -0.437 C1 8YQ 13 8YQ C2 C12 C 0 1 Y N N -14.439 55.123 -19.547 -3.684 5.667 0.794 C2 8YQ 14 8YQ C3 C13 C 0 1 Y N N -14.210 55.650 -18.259 -3.253 5.033 1.943 C3 8YQ 15 8YQ C4 C14 C 0 1 Y N N -13.190 56.571 -18.034 -2.649 3.791 1.864 C4 8YQ 16 8YQ C5 C15 C 0 1 Y N N -12.387 56.982 -19.107 -2.478 3.184 0.634 C5 8YQ 17 8YQ C6 C16 C 0 1 N N N -11.296 58.003 -18.845 -1.821 1.831 0.547 C6 8YQ 18 8YQ C7 C17 C 0 1 Y N N -11.226 60.191 -17.571 -2.388 -0.478 0.583 C7 8YQ 19 8YQ O5 O2 O 0 1 N N N -15.896 59.357 -18.929 -7.032 1.231 1.270 O5 8YQ 20 8YQ N N2 N 0 1 N N N -12.866 54.406 -22.885 -5.367 5.369 -1.977 N 8YQ 21 8YQ C C18 C 0 1 N N N -13.977 54.914 -22.076 -3.978 5.753 -1.691 C 8YQ 22 8YQ O O3 O 0 1 N N N -11.935 59.046 -18.178 -2.817 0.811 0.644 O 8YQ 23 8YQ CL CL1 CL 0 0 N N N -9.039 63.818 -15.657 -0.979 -4.753 0.379 CL 8YQ 24 8YQ O1 O4 O 0 1 N N N -7.702 61.648 -17.109 0.720 -2.341 0.223 O1 8YQ 25 8YQ O2 O5 O 0 1 N N N 0.323 61.110 -23.316 9.605 2.389 -0.707 O2 8YQ 26 8YQ O4 O6 O 0 1 N N N -14.930 64.455 -19.189 -7.066 -2.098 -2.989 O4 8YQ 27 8YQ O6 O7 O 0 1 N N N -14.123 59.537 -20.103 -7.483 -0.842 1.887 O6 8YQ 28 8YQ C18 C19 C 0 1 Y N N -0.600 61.265 -22.320 8.573 1.508 -0.609 C18 8YQ 29 8YQ C19 C20 C 0 1 N N N 1.403 60.264 -23.167 10.792 2.043 -0.139 C19 8YQ 30 8YQ C20 C21 C 0 1 N N N 1.523 59.505 -22.017 10.872 1.050 0.721 C20 8YQ 31 8YQ C21 C22 C 0 1 Y N N -1.650 62.138 -22.466 7.453 1.643 -1.412 C21 8YQ 32 8YQ C22 C23 C 0 1 Y N N -2.556 62.188 -21.399 6.409 0.745 -1.299 C22 8YQ 33 8YQ C23 C24 C 0 1 Y N N -2.902 62.068 -17.859 5.620 -2.641 -0.313 C23 8YQ 34 8YQ C24 C25 C 0 1 Y N N -3.796 62.198 -16.797 4.576 -3.536 -0.205 C24 8YQ 35 8YQ C25 C26 C 0 1 Y N N -5.098 61.774 -16.852 3.279 -3.076 -0.064 C25 8YQ 36 8YQ C26 C27 C 0 1 Y N N -9.896 62.391 -16.413 -1.521 -3.106 0.458 C26 8YQ 37 8YQ C27 C28 C 0 1 Y N N -11.300 62.246 -16.325 -2.868 -2.829 0.608 C27 8YQ 38 8YQ C28 C29 C 0 1 Y N N -11.979 61.159 -16.916 -3.302 -1.518 0.671 C28 8YQ 39 8YQ C29 C30 C 0 1 N N N -13.528 61.026 -16.777 -4.770 -1.219 0.834 C29 8YQ 40 8YQ C30 C31 C 0 1 N N R -14.379 62.054 -17.536 -5.398 -0.978 -0.540 C30 8YQ 41 8YQ C31 C32 C 0 1 N N R -13.919 63.640 -19.172 -6.726 -2.605 -1.697 C31 8YQ 42 8YQ C32 C33 C 0 1 N N N -14.209 62.289 -19.916 -7.615 -1.950 -0.610 C32 8YQ 43 8YQ C33 C34 C 0 1 N N R -14.961 61.615 -19.057 -6.885 -0.601 -0.379 C33 8YQ 44 8YQ C34 C35 C 0 1 N N N -14.976 60.077 -19.386 -7.156 -0.080 1.009 C34 8YQ 45 8YQ C35 C36 C 0 1 Y N N -12.617 56.463 -20.405 -2.910 3.818 -0.516 C35 8YQ 46 8YQ H1 H1 H 0 1 N N N -4.990 59.331 -20.357 3.600 1.035 -1.085 H1 8YQ 47 8YQ H2 H2 H 0 1 N N N -6.246 60.606 -20.513 2.898 0.850 0.540 H2 8YQ 48 8YQ H3 H3 H 0 1 N N N -4.626 60.846 -21.250 4.636 1.186 0.355 H3 8YQ 49 8YQ H4 H4 H 0 1 N N N -1.215 59.945 -19.205 7.686 -1.261 1.122 H4 8YQ 50 8YQ H5 H5 H 0 1 N N N -9.250 59.586 -18.167 -0.325 0.056 0.368 H5 8YQ 51 8YQ H6 H6 H 0 1 N N N -7.433 60.796 -18.997 1.530 -0.630 1.050 H6 8YQ 52 8YQ H7 H7 H 0 1 N N N -7.066 59.721 -17.606 1.338 -0.609 -0.720 H7 8YQ 53 8YQ H8 H8 H 0 1 N N N -12.700 62.991 -17.553 -4.882 -2.955 -0.831 H8 8YQ 54 8YQ H10 H10 H 0 1 N N N -15.233 54.407 -19.697 -4.155 6.636 0.856 H10 8YQ 55 8YQ H11 H11 H 0 1 N N N -14.834 55.335 -17.436 -3.386 5.508 2.904 H11 8YQ 56 8YQ H12 H12 H 0 1 N N N -13.019 56.965 -17.043 -2.312 3.296 2.762 H12 8YQ 57 8YQ H13 H13 H 0 1 N N N -10.503 57.570 -18.217 -1.300 1.740 -0.406 H13 8YQ 58 8YQ H14 H14 H 0 1 N N N -10.862 58.357 -19.792 -1.107 1.720 1.363 H14 8YQ 59 8YQ H15 H15 H 0 1 N N N -15.777 58.463 -19.228 -7.216 1.518 2.175 H15 8YQ 60 8YQ H16 H16 H 0 1 N N N -13.218 54.057 -23.753 -5.967 5.572 -1.191 H16 8YQ 61 8YQ H17 H17 H 0 1 N N N -12.217 55.146 -23.062 -5.702 5.822 -2.814 H17 8YQ 62 8YQ H19 H19 H 0 1 N N N -14.471 55.705 -22.659 -3.921 6.833 -1.551 H19 8YQ 63 8YQ H20 H20 H 0 1 N N N -14.678 54.080 -21.922 -3.341 5.460 -2.526 H20 8YQ 64 8YQ H21 H21 H 0 1 N N N -14.702 65.253 -18.727 -6.509 -2.437 -3.703 H21 8YQ 65 8YQ H22 H22 H 0 1 N N N 2.150 60.195 -23.944 11.684 2.593 -0.399 H22 8YQ 66 8YQ H23 H23 H 0 1 N N N 2.336 58.803 -21.906 11.829 0.800 1.155 H23 8YQ 67 8YQ H24 H24 H 0 1 N N N -1.770 62.748 -23.349 7.394 2.454 -2.123 H24 8YQ 68 8YQ H25 H25 H 0 1 N N N -3.425 62.824 -21.480 5.532 0.857 -1.920 H25 8YQ 69 8YQ H26 H26 H 0 1 N N N -1.876 62.390 -17.761 6.631 -3.001 -0.433 H26 8YQ 70 8YQ H27 H27 H 0 1 N N N -3.444 62.656 -15.884 4.770 -4.598 -0.238 H27 8YQ 71 8YQ H28 H28 H 0 1 N N N -5.755 61.884 -16.002 2.464 -3.780 0.017 H28 8YQ 72 8YQ H29 H29 H 0 1 N N N -11.870 62.990 -15.789 -3.581 -3.637 0.677 H29 8YQ 73 8YQ H30 H30 H 0 1 N N N -13.775 61.112 -15.709 -5.262 -2.065 1.315 H30 8YQ 74 8YQ H31 H31 H 0 1 N N N -13.811 60.027 -17.139 -4.893 -0.329 1.451 H31 8YQ 75 8YQ H32 H32 H 0 1 N N N -15.270 62.258 -16.924 -4.864 -0.181 -1.057 H32 8YQ 76 8YQ H33 H33 H 0 1 N N N -12.995 64.082 -19.572 -6.834 -3.689 -1.675 H33 8YQ 77 8YQ H34 H34 H 0 1 N N N -14.751 62.467 -20.857 -8.628 -1.788 -0.980 H34 8YQ 78 8YQ H35 H35 H 0 1 N N N -13.274 61.749 -20.128 -7.625 -2.550 0.300 H35 8YQ 79 8YQ H36 H36 H 0 1 N N N -16.003 61.967 -19.097 -7.181 0.131 -1.131 H36 8YQ 80 8YQ H37 H37 H 0 1 N N N -11.998 56.793 -21.226 -2.776 3.344 -1.477 H37 8YQ 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8YQ O2 C19 SING N N 1 8YQ O2 C18 SING N N 2 8YQ C19 C20 DOUB N N 3 8YQ N C SING N N 4 8YQ C21 C18 DOUB Y N 5 8YQ C21 C22 SING Y N 6 8YQ C18 C17 SING Y N 7 8YQ C C1 SING N N 8 8YQ C20 O3 SING N N 9 8YQ C22 C15 DOUB Y N 10 8YQ C17 O3 SING N N 11 8YQ C17 C16 DOUB Y N 12 8YQ C1 C35 DOUB Y N 13 8YQ C1 C2 SING Y N 14 8YQ C35 C5 SING Y N 15 8YQ C13 C12 SING N N 16 8YQ C15 C16 SING Y N 17 8YQ C15 C14 SING N N 18 8YQ O6 C34 DOUB N N 19 8YQ C32 C31 SING N N 20 8YQ C32 C33 SING N N 21 8YQ C2 C3 DOUB Y N 22 8YQ C34 C33 SING N N 23 8YQ C34 O5 SING N N 24 8YQ O4 C31 SING N N 25 8YQ C31 N1 SING N N 26 8YQ C12 C14 DOUB Y N 27 8YQ C12 C11 SING Y N 28 8YQ C5 C6 SING N N 29 8YQ C5 C4 DOUB Y N 30 8YQ C33 C30 SING N N 31 8YQ C14 C23 SING Y N 32 8YQ C6 O SING N N 33 8YQ C3 C4 SING Y N 34 8YQ O C7 SING N N 35 8YQ C11 C10 SING N N 36 8YQ C11 C25 DOUB Y N 37 8YQ C10 O1 SING N N 38 8YQ C23 C24 DOUB Y N 39 8YQ N1 C30 SING N N 40 8YQ C8 C7 DOUB Y N 41 8YQ C8 C9 SING Y N 42 8YQ C7 C28 SING Y N 43 8YQ C30 C29 SING N N 44 8YQ O1 C9 SING N N 45 8YQ C9 C26 DOUB Y N 46 8YQ C28 C29 SING N N 47 8YQ C28 C27 DOUB Y N 48 8YQ C25 C24 SING Y N 49 8YQ C26 C27 SING Y N 50 8YQ C26 CL SING N N 51 8YQ C13 H1 SING N N 52 8YQ C13 H2 SING N N 53 8YQ C13 H3 SING N N 54 8YQ C16 H4 SING N N 55 8YQ C8 H5 SING N N 56 8YQ C10 H6 SING N N 57 8YQ C10 H7 SING N N 58 8YQ N1 H8 SING N N 59 8YQ C2 H10 SING N N 60 8YQ C3 H11 SING N N 61 8YQ C4 H12 SING N N 62 8YQ C6 H13 SING N N 63 8YQ C6 H14 SING N N 64 8YQ O5 H15 SING N N 65 8YQ N H16 SING N N 66 8YQ N H17 SING N N 67 8YQ C H19 SING N N 68 8YQ C H20 SING N N 69 8YQ O4 H21 SING N N 70 8YQ C19 H22 SING N N 71 8YQ C20 H23 SING N N 72 8YQ C21 H24 SING N N 73 8YQ C22 H25 SING N N 74 8YQ C23 H26 SING N N 75 8YQ C24 H27 SING N N 76 8YQ C25 H28 SING N N 77 8YQ C27 H29 SING N N 78 8YQ C29 H30 SING N N 79 8YQ C29 H31 SING N N 80 8YQ C30 H32 SING N N 81 8YQ C31 H33 SING N N 82 8YQ C32 H34 SING N N 83 8YQ C32 H35 SING N N 84 8YQ C33 H36 SING N N 85 8YQ C35 H37 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8YQ InChI InChI 1.03 "InChI=1S/C36H35ClN2O7/c1-21-25(6-3-7-27(21)24-8-9-31-34(15-24)44-11-10-43-31)20-46-33-17-32(45-19-23-5-2-4-22(12-23)18-38)26(13-29(33)37)14-30-28(36(41)42)16-35(40)39-30/h2-13,15,17,28,30,35,39-40H,14,16,18-20,38H2,1H3,(H,41,42)/t28-,30-,35-/m1/s1" 8YQ InChIKey InChI 1.03 YRYUBNOJILTDAA-GMBIYBECSA-N 8YQ SMILES_CANONICAL CACTVS 3.385 "Cc1c(COc2cc(OCc3cccc(CN)c3)c(C[C@H]4N[C@H](O)C[C@H]4C(O)=O)cc2Cl)cccc1c5ccc6OC=COc6c5" 8YQ SMILES CACTVS 3.385 "Cc1c(COc2cc(OCc3cccc(CN)c3)c(C[CH]4N[CH](O)C[CH]4C(O)=O)cc2Cl)cccc1c5ccc6OC=COc6c5" 8YQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(cccc1c2ccc3c(c2)OC=CO3)COc4cc(c(cc4Cl)C[C@@H]5[C@@H](C[C@H](N5)O)C(=O)O)OCc6cccc(c6)CN" 8YQ SMILES "OpenEye OEToolkits" 2.0.6 "Cc1c(cccc1c2ccc3c(c2)OC=CO3)COc4cc(c(cc4Cl)CC5C(CC(N5)O)C(=O)O)OCc6cccc(c6)CN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8YQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},5~{R})-2-[[2-[[3-(aminomethyl)phenyl]methoxy]-4-[[3-(1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-chloranyl-phenyl]methyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8YQ "Create component" 2017-03-27 EBI 8YQ "Other modification" 2017-03-28 EBI 8YQ "Initial release" 2017-12-06 RCSB #