data_8YV # _chem_comp.id 8YV _chem_comp.name "2-keto-D-gluconic acid" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H10 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3S,4R,5R)-3,4,5,6-tetrahydroxy-2-oxohexanoic acid; D-fructosonic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-03-21 _chem_comp.pdbx_modified_date 2020-06-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 194.139 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8YV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5V7N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8YV C4 C1 C 0 1 N N R 65.157 65.742 22.385 -0.573 0.077 0.320 C2 8YV 1 8YV C2 C2 C 0 1 N N N 63.691 63.953 23.338 1.798 -0.494 -0.126 C4 8YV 2 8YV O4 O1 O 0 1 N N N 66.105 66.009 21.352 -0.468 -0.665 1.537 O4 8YV 3 8YV O1A O2 O 0 1 N N N 61.757 65.329 22.896 2.060 1.824 -0.370 O1 8YV 4 8YV C1 C3 C 0 1 N N N 62.454 64.764 23.728 2.559 0.781 -0.002 C5 8YV 5 8YV O1B O3 O 0 1 N N N 62.246 64.789 25.002 3.801 0.776 0.518 O2 8YV 6 8YV O2 O4 O 0 1 N N N 64.085 63.011 23.988 2.296 -1.533 0.240 O 8YV 7 8YV C3 C4 C 0 1 N N S 64.450 64.410 22.094 0.408 -0.489 -0.709 C3 8YV 8 8YV O3 O5 O 0 1 N N N 63.506 64.560 21.063 0.028 -1.824 -1.046 O3 8YV 9 8YV C5 C5 C 0 1 N N R 65.845 65.668 23.749 -2.000 -0.033 -0.222 C1 8YV 10 8YV O5 O6 O 0 1 N N N 64.853 65.502 24.761 -2.105 0.709 -1.439 O5 8YV 11 8YV C6 C6 C 0 1 N N N 66.644 66.893 24.119 -2.981 0.533 0.806 C 8YV 12 8YV O6 O7 O 0 1 N N N 67.099 66.748 25.454 -4.320 0.325 0.352 O6 8YV 13 8YV H4 H1 H 0 1 N N N 64.400 66.540 22.416 -0.336 1.123 0.511 H1 8YV 14 8YV HO4 H2 H 0 1 N N N 66.544 66.833 21.530 -0.666 -1.607 1.441 H2 8YV 15 8YV HO1B H3 H 0 1 N N N 61.474 65.311 25.187 4.255 1.628 0.578 H3 8YV 16 8YV H3 H4 H 0 1 N N N 65.203 63.653 21.831 0.392 0.131 -1.605 H4 8YV 17 8YV HO3 H5 H 0 1 N N N 62.681 64.857 21.429 0.020 -2.433 -0.295 H5 8YV 18 8YV H5 H6 H 0 1 N N N 66.519 64.799 23.748 -2.237 -1.079 -0.413 H6 8YV 19 8YV HO5 H7 H 0 1 N N N 64.442 64.651 24.665 -1.907 1.651 -1.344 H7 8YV 20 8YV H61 H8 H 0 1 N N N 67.505 66.992 23.442 -2.839 0.026 1.761 H8 8YV 21 8YV H62 H9 H 0 1 N N N 66.009 67.788 24.039 -2.801 1.600 0.932 H9 8YV 22 8YV HO6 H10 H 0 1 N N N 67.605 67.513 25.702 -4.997 0.660 0.956 H10 8YV 23 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8YV O3 C3 SING N N 1 8YV O4 C4 SING N N 2 8YV C3 C4 SING N N 3 8YV C3 C2 SING N N 4 8YV C4 C5 SING N N 5 8YV O1A C1 DOUB N N 6 8YV C2 C1 SING N N 7 8YV C2 O2 DOUB N N 8 8YV C1 O1B SING N N 9 8YV C5 C6 SING N N 10 8YV C5 O5 SING N N 11 8YV C6 O6 SING N N 12 8YV C4 H4 SING N N 13 8YV O4 HO4 SING N N 14 8YV O1B HO1B SING N N 15 8YV C3 H3 SING N N 16 8YV O3 HO3 SING N N 17 8YV C5 H5 SING N N 18 8YV O5 HO5 SING N N 19 8YV C6 H61 SING N N 20 8YV C6 H62 SING N N 21 8YV O6 HO6 SING N N 22 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8YV SMILES ACDLabs 12.01 "C(C(CO)O)(O)C(C(C(=O)O)=O)O" 8YV InChI InChI 1.03 "InChI=1S/C6H10O7/c7-1-2(8)3(9)4(10)5(11)6(12)13/h2-4,7-10H,1H2,(H,12,13)/t2-,3-,4+/m1/s1" 8YV InChIKey InChI 1.03 VBUYCZFBVCCYFD-JJYYJPOSSA-N 8YV SMILES_CANONICAL CACTVS 3.385 "OC[C@@H](O)[C@@H](O)[C@H](O)C(=O)C(O)=O" 8YV SMILES CACTVS 3.385 "OC[CH](O)[CH](O)[CH](O)C(=O)C(O)=O" 8YV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H]([C@H]([C@@H](C(=O)C(=O)O)O)O)O)O" 8YV SMILES "OpenEye OEToolkits" 2.0.6 "C(C(C(C(C(=O)C(=O)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8YV "SYSTEMATIC NAME" ACDLabs 12.01 "D-fructosonic acid" 8YV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{S},4~{R},5~{R})-3,4,5,6-tetrakis(oxidanyl)-2-oxidanylidene-hexanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8YV "Create component" 2017-03-21 RCSB 8YV "Modify name" 2017-03-21 RCSB 8YV "Initial release" 2017-03-29 RCSB 8YV "Modify synonyms" 2020-05-26 PDBE 8YV "Modify atom id" 2020-06-24 RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 8YV "(3S,4R,5R)-3,4,5,6-tetrahydroxy-2-oxohexanoic acid" ? ? 2 8YV "D-fructosonic acid" ? ? ##