data_8YZ
#
_chem_comp.id 8YZ
_chem_comp.name "(2~{R})-2-[[2-[(3-cyanophenyl)methoxy]-4-[[3-(2,3-dihydro-1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-methyl-phenyl]methylamino]-3-oxidanyl-propanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H34 N2 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-03-28
_chem_comp.pdbx_modified_date 2017-12-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 594.654
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8YZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5NIU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8YZ N1 N1 N 0 1 N N N -2.897 17.760 190.133 4.781 5.960 -2.875 N1 8YZ 1
8YZ C15 C1 C 0 1 N N N -1.750 17.497 190.196 4.498 5.319 -1.982 C15 8YZ 2
8YZ C14 C2 C 0 1 Y N N -0.498 17.239 190.443 4.142 4.510 -0.855 C14 8YZ 3
8YZ C13 C3 C 0 1 Y N N 0.199 17.968 191.406 4.488 4.914 0.436 C13 8YZ 4
8YZ C12 C4 C 0 1 Y N N 1.526 17.631 191.695 4.141 4.130 1.517 C12 8YZ 5
8YZ C11 C5 C 0 1 Y N N 2.169 16.625 191.026 3.453 2.946 1.324 C11 8YZ 6
8YZ C16 C6 C 0 1 Y N N 0.147 16.173 189.794 3.441 3.316 -1.042 C16 8YZ 7
8YZ C10 C7 C 0 1 Y N N 1.499 15.901 190.075 3.107 2.539 0.047 C10 8YZ 8
8YZ C9 C8 C 0 1 N N N 2.286 14.805 189.441 2.352 1.250 -0.153 C9 8YZ 9
8YZ O3 O1 O 0 1 N N N 1.594 13.612 189.726 3.279 0.178 -0.333 O3 8YZ 10
8YZ C8 C9 C 0 1 Y N N 1.928 12.447 189.113 2.758 -1.062 -0.527 C8 8YZ 11
8YZ C4 C10 C 0 1 Y N N 0.982 11.314 189.294 3.601 -2.149 -0.708 C4 8YZ 12
8YZ C3 C11 C 0 1 N N N -0.196 11.527 190.169 5.095 -1.954 -0.690 C3 8YZ 13
8YZ N N2 N 0 1 N N N 0.378 11.341 191.522 5.562 -1.871 0.701 N 8YZ 14
8YZ C1 C12 C 0 1 N N R -0.730 11.217 192.520 7.017 -1.681 0.757 C1 8YZ 15
8YZ C2 C13 C 0 1 N N N -1.701 10.044 192.263 7.337 -0.213 0.631 C2 8YZ 16
8YZ O2 O2 O 0 1 N N N -1.421 9.004 191.637 6.444 0.591 0.506 O2 8YZ 17
8YZ O1 O3 O 0 1 N N N -2.927 10.157 192.756 8.614 0.200 0.656 O1 8YZ 18
8YZ C C14 C 0 1 N N N -0.019 11.129 193.870 7.548 -2.205 2.093 C 8YZ 19
8YZ O O4 O 0 1 N N N 0.539 12.399 194.237 7.022 -1.413 3.159 O 8YZ 20
8YZ C17 C15 C 0 1 Y N N 3.080 12.288 188.293 1.384 -1.243 -0.538 C17 8YZ 21
8YZ C18 C16 C 0 1 Y N N 3.302 11.027 187.678 0.855 -2.511 -0.730 C18 8YZ 22
8YZ C6 C17 C 0 1 Y N N 2.329 9.881 187.923 1.702 -3.594 -0.911 C6 8YZ 23
8YZ C7 C18 C 0 1 N N N 2.527 8.502 187.297 1.129 -4.972 -1.120 C7 8YZ 24
8YZ C5 C19 C 0 1 Y N N 1.215 10.077 188.738 3.072 -3.410 -0.905 C5 8YZ 25
8YZ O4 O5 O 0 1 N N N 4.375 10.862 186.889 -0.492 -2.692 -0.736 O4 8YZ 26
8YZ C19 C20 C 0 1 N N N 5.484 11.691 187.409 -1.303 -1.532 -0.544 C19 8YZ 27
8YZ C20 C21 C 0 1 Y N N 6.623 11.147 186.722 -2.758 -1.924 -0.581 C20 8YZ 28
8YZ C34 C22 C 0 1 Y N N 6.436 10.358 185.648 -3.111 -3.248 -0.774 C34 8YZ 29
8YZ C33 C23 C 0 1 Y N N 7.476 9.804 185.006 -4.444 -3.616 -0.804 C33 8YZ 30
8YZ C32 C24 C 0 1 Y N N 8.757 10.093 185.426 -5.429 -2.664 -0.641 C32 8YZ 31
8YZ C23 C25 C 0 1 Y N N 9.024 10.896 186.485 -5.080 -1.329 -0.446 C23 8YZ 32
8YZ C21 C26 C 0 1 Y N N 7.943 11.477 187.169 -3.735 -0.964 -0.417 C21 8YZ 33
8YZ C22 C27 C 0 1 N N N 8.193 12.361 188.313 -3.349 0.477 -0.201 C22 8YZ 34
8YZ C24 C28 C 0 1 Y N N 10.473 11.147 186.855 -6.135 -0.301 -0.270 C24 8YZ 35
8YZ C31 C29 C 0 1 Y N N 11.051 10.707 188.057 -6.176 0.807 -1.114 C31 8YZ 36
8YZ C30 C30 C 0 1 Y N N 12.445 10.942 188.289 -7.158 1.763 -0.948 C30 8YZ 37
8YZ C27 C31 C 0 1 Y N N 13.179 11.626 187.327 -8.105 1.625 0.056 C27 8YZ 38
8YZ O5 O6 O 0 1 N N N 14.532 11.892 187.424 -9.063 2.582 0.204 O5 8YZ 39
8YZ C28 C32 C 0 1 N N N 15.414 12.192 186.308 -10.214 2.226 0.977 C28 8YZ 40
8YZ C29 C33 C 0 1 N N N 14.734 13.171 185.425 -9.737 1.532 2.260 C29 8YZ 41
8YZ O6 O7 O 0 1 N N N 13.380 12.695 185.139 -8.994 0.366 1.888 O6 8YZ 42
8YZ C26 C34 C 0 1 Y N N 12.571 12.053 186.069 -8.070 0.519 0.900 C26 8YZ 43
8YZ C25 C35 C 0 1 Y N N 11.201 11.848 185.871 -7.089 -0.445 0.734 C25 8YZ 44
8YZ H1 H1 H 0 1 N N N -0.281 18.785 191.924 5.025 5.838 0.588 H1 8YZ 45
8YZ H2 H2 H 0 1 N N N 2.054 18.177 192.463 4.407 4.442 2.516 H2 8YZ 46
8YZ H3 H3 H 0 1 N N N 3.202 16.402 191.247 3.184 2.336 2.174 H3 8YZ 47
8YZ H4 H4 H 0 1 N N N -0.392 15.565 189.083 3.171 2.998 -2.038 H4 8YZ 48
8YZ H5 H5 H 0 1 N N N 3.300 14.769 189.865 1.733 1.052 0.723 H5 8YZ 49
8YZ H6 H6 H 0 1 N N N 2.349 14.960 188.354 1.717 1.334 -1.035 H6 8YZ 50
8YZ H7 H7 H 0 1 N N N -0.606 12.540 190.046 5.578 -2.797 -1.185 H7 8YZ 51
8YZ H8 H8 H 0 1 N N N -0.983 10.786 189.965 5.348 -1.032 -1.214 H8 8YZ 52
8YZ H9 H9 H 0 1 N N N 0.935 10.510 191.537 5.081 -1.138 1.200 H9 8YZ 53
8YZ H11 H11 H 0 1 N N N -1.316 12.148 192.505 7.487 -2.227 -0.060 H11 8YZ 54
8YZ H12 H12 H 0 1 N N N -3.428 9.379 192.541 8.769 1.150 0.572 H12 8YZ 55
8YZ H13 H13 H 0 1 N N N -0.742 10.817 194.638 7.240 -3.242 2.225 H13 8YZ 56
8YZ H14 H14 H 0 1 N N N 0.789 10.386 193.804 8.637 -2.145 2.100 H14 8YZ 57
8YZ H15 H15 H 0 1 N N N 0.975 12.323 195.077 7.317 -1.689 4.037 H15 8YZ 58
8YZ H16 H16 H 0 1 N N N 3.769 13.106 188.142 0.726 -0.399 -0.396 H16 8YZ 59
8YZ H17 H17 H 0 1 N N N 3.128 7.875 187.972 0.978 -5.145 -2.186 H17 8YZ 60
8YZ H18 H18 H 0 1 N N N 1.547 8.030 187.134 1.820 -5.717 -0.726 H18 8YZ 61
8YZ H19 H19 H 0 1 N N N 3.048 8.608 186.334 0.174 -5.051 -0.601 H19 8YZ 62
8YZ H20 H20 H 0 1 N N N 0.536 9.260 188.933 3.730 -4.255 -1.046 H20 8YZ 63
8YZ H21 H21 H 0 1 N N N 5.586 11.581 188.499 -1.073 -1.083 0.422 H21 8YZ 64
8YZ H22 H22 H 0 1 N N N 5.338 12.752 187.160 -1.101 -0.811 -1.337 H22 8YZ 65
8YZ H23 H23 H 0 1 N N N 5.433 10.168 185.297 -2.343 -3.996 -0.902 H23 8YZ 66
8YZ H24 H24 H 0 1 N N N 7.312 9.140 184.170 -4.714 -4.651 -0.956 H24 8YZ 67
8YZ H25 H25 H 0 1 N N N 9.586 9.660 184.886 -6.470 -2.953 -0.665 H25 8YZ 68
8YZ H26 H26 H 0 1 N N N 8.279 13.400 187.962 -3.329 0.995 -1.159 H26 8YZ 69
8YZ H27 H27 H 0 1 N N N 7.359 12.282 189.026 -4.077 0.954 0.455 H27 8YZ 70
8YZ H28 H28 H 0 1 N N N 9.129 12.063 188.809 -2.362 0.523 0.258 H28 8YZ 71
8YZ H29 H29 H 0 1 N N N 10.452 10.198 188.797 -5.441 0.918 -1.896 H29 8YZ 72
8YZ H30 H30 H 0 1 N N N 12.917 10.594 189.196 -7.189 2.621 -1.603 H30 8YZ 73
8YZ H31 H31 H 0 1 N N N 15.629 11.271 185.746 -10.777 3.124 1.232 H31 8YZ 74
8YZ H32 H32 H 0 1 N N N 16.355 12.621 186.683 -10.846 1.547 0.404 H32 8YZ 75
8YZ H33 H33 H 0 1 N N N 15.296 13.272 184.485 -9.099 2.209 2.828 H33 8YZ 76
8YZ H34 H34 H 0 1 N N N 14.683 14.148 185.928 -10.597 1.243 2.864 H34 8YZ 77
8YZ H35 H35 H 0 1 N N N 10.711 12.219 184.983 -7.062 -1.305 1.387 H35 8YZ 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8YZ C33 C32 DOUB Y N 1
8YZ C33 C34 SING Y N 2
8YZ O6 C29 SING N N 3
8YZ O6 C26 SING N N 4
8YZ C29 C28 SING N N 5
8YZ C32 C23 SING Y N 6
8YZ C34 C20 DOUB Y N 7
8YZ C25 C26 DOUB Y N 8
8YZ C25 C24 SING Y N 9
8YZ C26 C27 SING Y N 10
8YZ C28 O5 SING N N 11
8YZ C23 C24 SING N N 12
8YZ C23 C21 DOUB Y N 13
8YZ C20 C21 SING Y N 14
8YZ C20 C19 SING N N 15
8YZ C24 C31 DOUB Y N 16
8YZ O4 C19 SING N N 17
8YZ O4 C18 SING N N 18
8YZ C21 C22 SING N N 19
8YZ C7 C6 SING N N 20
8YZ C27 O5 SING N N 21
8YZ C27 C30 DOUB Y N 22
8YZ C18 C6 DOUB Y N 23
8YZ C18 C17 SING Y N 24
8YZ C6 C5 SING Y N 25
8YZ C31 C30 SING Y N 26
8YZ C17 C8 DOUB Y N 27
8YZ C5 C4 DOUB Y N 28
8YZ C8 C4 SING Y N 29
8YZ C8 O3 SING N N 30
8YZ C4 C3 SING N N 31
8YZ C9 O3 SING N N 32
8YZ C9 C10 SING N N 33
8YZ C16 C10 DOUB Y N 34
8YZ C16 C14 SING Y N 35
8YZ C10 C11 SING Y N 36
8YZ N1 C15 TRIP N N 37
8YZ C3 N SING N N 38
8YZ C15 C14 SING N N 39
8YZ C14 C13 DOUB Y N 40
8YZ C11 C12 DOUB Y N 41
8YZ C13 C12 SING Y N 42
8YZ N C1 SING N N 43
8YZ O2 C2 DOUB N N 44
8YZ C2 C1 SING N N 45
8YZ C2 O1 SING N N 46
8YZ C1 C SING N N 47
8YZ C O SING N N 48
8YZ C13 H1 SING N N 49
8YZ C12 H2 SING N N 50
8YZ C11 H3 SING N N 51
8YZ C16 H4 SING N N 52
8YZ C9 H5 SING N N 53
8YZ C9 H6 SING N N 54
8YZ C3 H7 SING N N 55
8YZ C3 H8 SING N N 56
8YZ N H9 SING N N 57
8YZ C1 H11 SING N N 58
8YZ O1 H12 SING N N 59
8YZ C H13 SING N N 60
8YZ C H14 SING N N 61
8YZ O H15 SING N N 62
8YZ C17 H16 SING N N 63
8YZ C7 H17 SING N N 64
8YZ C7 H18 SING N N 65
8YZ C7 H19 SING N N 66
8YZ C5 H20 SING N N 67
8YZ C19 H21 SING N N 68
8YZ C19 H22 SING N N 69
8YZ C34 H23 SING N N 70
8YZ C33 H24 SING N N 71
8YZ C32 H25 SING N N 72
8YZ C22 H26 SING N N 73
8YZ C22 H27 SING N N 74
8YZ C22 H28 SING N N 75
8YZ C31 H29 SING N N 76
8YZ C30 H30 SING N N 77
8YZ C28 H31 SING N N 78
8YZ C28 H32 SING N N 79
8YZ C29 H33 SING N N 80
8YZ C29 H34 SING N N 81
8YZ C25 H35 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8YZ InChI InChI 1.03
"InChI=1S/C35H34N2O7/c1-22-13-28(18-37-30(19-38)35(39)40)33(43-20-25-6-3-5-24(14-25)17-36)16-32(22)44-21-27-7-4-8-29(23(27)2)26-9-10-31-34(15-26)42-12-11-41-31/h3-10,13-16,30,37-38H,11-12,18-21H2,1-2H3,(H,39,40)/t30-/m1/s1"
8YZ InChIKey InChI 1.03 UWNXGZKSIKQKAH-SSEXGKCCSA-N
8YZ SMILES_CANONICAL CACTVS 3.385 "Cc1cc(CN[C@H](CO)C(O)=O)c(OCc2cccc(c2)C#N)cc1OCc3cccc(c3C)c4ccc5OCCOc5c4"
8YZ SMILES CACTVS 3.385 "Cc1cc(CN[CH](CO)C(O)=O)c(OCc2cccc(c2)C#N)cc1OCc3cccc(c3C)c4ccc5OCCOc5c4"
8YZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(c(cc1OCc2cccc(c2C)c3ccc4c(c3)OCCO4)OCc5cccc(c5)C#N)CN[C@H](CO)C(=O)O"
8YZ SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc(c(cc1OCc2cccc(c2C)c3ccc4c(c3)OCCO4)OCc5cccc(c5)C#N)CNC(CO)C(=O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
8YZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-[[2-[(3-cyanophenyl)methoxy]-4-[[3-(2,3-dihydro-1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-methyl-phenyl]methylamino]-3-oxidanyl-propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8YZ "Create component" 2017-03-28 EBI
8YZ "Initial release" 2017-12-06 RCSB
#