data_8ZI # _chem_comp.id 8ZI _chem_comp.name "(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(3,3-dimethylbutanoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H47 N5 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 549.703 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 8ZI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SF1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 8ZI N1 N1 N 0 1 N N N N N N 10.816 -25.290 22.717 -0.352 -0.702 0.326 N1 8ZI 1 8ZI N3 N2 N 0 1 N N N N N N 9.083 -27.485 20.641 3.269 0.004 0.147 N3 8ZI 2 8ZI C4 C1 C 0 1 N N S N N N 11.956 -26.733 24.180 0.229 -2.958 0.879 C4 8ZI 3 8ZI C5 C2 C 0 1 N N N N N N 13.088 -27.123 23.252 0.002 -2.606 2.351 C5 8ZI 4 8ZI C6 C3 C 0 1 N N N N N N 13.815 -26.068 22.441 -1.165 -1.675 2.682 C6 8ZI 5 8ZI C7 C4 C 0 1 N N N N N N 14.001 -28.257 23.682 0.293 -3.693 3.388 C7 8ZI 6 8ZI C8 C5 C 0 1 N N N N N N 11.286 -25.375 24.109 -0.461 -2.085 -0.192 C8 8ZI 7 8ZI C10 C6 C 0 1 N N S N N N 10.133 -22.931 22.962 -2.576 0.045 -0.456 C10 8ZI 8 8ZI C13 C7 C 0 1 N N N N N N 7.763 -23.553 23.526 -1.344 -0.539 -2.549 C13 8ZI 9 8ZI C15 C8 C 0 1 N N N N N N 12.174 -21.583 23.032 -4.913 0.547 0.018 C15 8ZI 10 8ZI C17 C9 C 0 1 N N N N N N 12.694 -19.046 22.805 -7.356 0.801 0.358 C17 8ZI 11 8ZI C20 C10 C 0 1 N N N N N N 13.776 -18.132 22.228 -8.443 1.695 0.960 C20 8ZI 12 8ZI C21 C11 C 0 1 N N S N N N 7.750 -28.042 20.365 4.273 0.187 -0.904 C21 8ZI 13 8ZI C22 C12 C 0 1 N N R N N N 7.939 -29.576 20.151 4.988 -1.141 -1.163 C22 8ZI 14 8ZI C24 C13 C 0 1 N N N N N N 7.072 -27.270 19.226 5.292 1.237 -0.459 C24 8ZI 15 8ZI C26 C14 C 0 1 N N N N N N 5.582 -25.504 20.457 5.616 3.681 0.099 C26 8ZI 16 8ZI C28 C15 C 0 1 N N N N N N 6.422 -25.021 18.271 3.599 2.565 0.813 C28 8ZI 17 8ZI O1 O1 O 0 1 N N N N N N 8.667 -26.975 22.793 1.763 -0.705 -1.320 O1 8ZI 18 8ZI C1 C16 C 0 1 N N N N N N 9.447 -27.069 21.853 2.039 -0.449 -0.167 C1 8ZI 19 8ZI C2 C17 C 0 1 N N S N N N 10.872 -26.566 21.999 1.006 -0.637 0.914 C2 8ZI 20 8ZI C3 C18 C 0 1 N N R N N N 11.664 -27.487 22.897 1.196 -2.002 1.609 C3 8ZI 21 8ZI C9 C19 C 0 1 N N N N N N 10.292 -24.200 22.116 -1.276 0.278 0.269 C9 8ZI 22 8ZI C11 C20 C 0 1 N N N N N N 8.684 -22.410 23.086 -2.401 0.383 -1.938 C11 8ZI 23 8ZI C12 C21 C 0 1 N N N N N N 8.142 -21.849 21.771 -3.731 0.188 -2.667 C12 8ZI 24 8ZI C14 C22 C 0 1 N N N N N N 8.647 -21.291 24.138 -1.951 1.839 -2.079 C14 8ZI 25 8ZI N2 N3 N 0 1 N N N N N N 11.034 -21.919 22.424 -3.617 0.901 0.120 N2 8ZI 26 8ZI C16 C23 C 0 1 N N N N N N 13.004 -20.499 22.369 -5.983 1.428 0.611 C16 8ZI 27 8ZI C18 C24 C 0 1 N N N N N N 12.717 -18.934 24.336 -7.414 -0.581 1.011 C18 8ZI 28 8ZI C19 C25 C 0 1 N N N N N N 11.327 -18.566 22.294 -7.585 0.664 -1.148 C19 8ZI 29 8ZI O2 O2 O 0 1 N N N N N N 12.526 -22.122 24.078 -5.219 -0.480 -0.550 O2 8ZI 30 8ZI O3 O3 O 0 1 N N N N N N 9.944 -24.217 20.925 -1.062 1.345 0.803 O3 8ZI 31 8ZI C23 C26 C 0 1 N N N N N N 6.590 -30.278 20.099 3.984 -2.175 -1.602 C23 8ZI 32 8ZI N4 N4 N 0 1 N N N N N N 6.235 -31.258 21.146 3.327 -2.024 -2.769 N4 8ZI 33 8ZI O4 O4 O 0 1 N N N N N N 5.823 -30.020 19.220 3.766 -3.143 -0.904 O4 8ZI 34 8ZI O5 O5 O 0 1 N N N N N N 8.703 -30.137 21.227 5.629 -1.578 0.037 O5 8ZI 35 8ZI C25 C27 C 0 1 N N S N N N 6.756 -25.804 19.534 4.600 2.594 -0.321 C25 8ZI 36 8ZI C27 C28 C 0 1 N N N N N N 4.993 -24.177 19.921 5.463 3.679 1.636 C27 8ZI 37 8ZI N5 N5 N 0 1 N N N N N N 5.429 -24.159 18.528 4.106 3.184 1.894 N5 8ZI 38 8ZI O6 O6 O 0 1 N N N N N N 6.995 -25.153 17.181 2.499 2.057 0.756 O6 8ZI 39 8ZI H1 H1 H 0 1 N N N N N N 9.741 -27.416 19.891 3.489 0.209 1.069 H1 8ZI 40 8ZI H2 H2 H 0 1 N N N N N N 11.863 -27.291 25.123 0.519 -3.973 0.608 H2 8ZI 41 8ZI H3 H3 H 0 1 N N N N N N 14.832 -25.935 22.839 -0.812 -0.859 3.312 H3 8ZI 42 8ZI H4 H4 H 0 1 N N N N N N 13.872 -26.388 21.390 -1.579 -1.268 1.759 H4 8ZI 43 8ZI H5 H5 H 0 1 N N N N N N 13.269 -25.115 22.505 -1.938 -2.234 3.211 H5 8ZI 44 8ZI H6 H6 H 0 1 N N N N N N 13.425 -28.991 24.265 0.777 -4.539 2.902 H6 8ZI 45 8ZI H7 H7 H 0 1 N N N N N N 14.423 -28.746 22.791 0.951 -3.292 4.159 H7 8ZI 46 8ZI H8 H8 H 0 1 N N N N N N 14.817 -27.856 24.301 -0.642 -4.021 3.843 H8 8ZI 47 8ZI H9 H9 H 0 1 N N N N N N 12.004 -24.571 24.330 -1.508 -2.370 -0.298 H9 8ZI 48 8ZI H10 H10 H 0 1 N N N N N N 10.442 -25.317 24.812 0.057 -2.176 -1.147 H10 8ZI 49 8ZI H11 H11 H 0 1 N N N N N N 10.471 -23.178 23.979 -2.868 -1.000 -0.354 H11 8ZI 50 8ZI H12 H12 H 0 1 N N N N N N 8.130 -23.977 24.472 -1.681 -1.573 -2.483 H12 8ZI 51 8ZI H13 H13 H 0 1 N N N N N N 6.743 -23.167 23.668 -1.191 -0.273 -3.596 H13 8ZI 52 8ZI H14 H14 H 0 1 N N N N N N 7.755 -24.335 22.753 -0.406 -0.427 -2.006 H14 8ZI 53 8ZI H15 H15 H 0 1 N N N N N N 14.763 -18.462 22.584 -8.280 1.793 2.033 H15 8ZI 54 8ZI H16 H16 H 0 1 N N N N N N 13.748 -18.179 21.129 -8.401 2.680 0.495 H16 8ZI 55 8ZI H17 H17 H 0 1 N N N N N N 13.595 -17.098 22.555 -9.421 1.249 0.780 H17 8ZI 56 8ZI H18 H18 H 0 1 N N N N N N 7.130 -27.914 21.265 3.784 0.521 -1.820 H18 8ZI 57 8ZI H19 H19 H 0 1 N N N N N N 8.460 -29.732 19.195 5.735 -1.005 -1.945 H19 8ZI 58 8ZI H20 H20 H 0 1 N N N N N N 6.127 -27.779 18.984 5.717 0.947 0.502 H20 8ZI 59 8ZI H21 H21 H 0 1 N N N N N N 7.738 -27.299 18.351 6.088 1.309 -1.201 H21 8ZI 60 8ZI H22 H22 H 0 1 N N N N N N 4.834 -26.309 20.408 6.629 3.401 -0.192 H22 8ZI 61 8ZI H23 H23 H 0 1 N N N N N N 5.925 -25.385 21.495 5.346 4.650 -0.319 H23 8ZI 62 8ZI H24 H24 H 0 1 N N N N N N 11.355 -26.460 21.016 1.067 0.173 1.641 H24 8ZI 63 8ZI H25 H25 H 0 1 N N N N N N 11.359 -28.541 22.968 2.208 -2.286 1.898 H25 8ZI 64 8ZI H26 H26 H 0 1 N N N N N N 7.111 -21.495 21.920 -4.484 0.844 -2.231 H26 8ZI 65 8ZI H27 H27 H 0 1 N N N N N N 8.774 -21.011 21.442 -3.606 0.428 -3.723 H27 8ZI 66 8ZI H28 H28 H 0 1 N N N N N N 8.151 -22.638 21.004 -4.052 -0.850 -2.566 H28 8ZI 67 8ZI H29 H29 H 0 1 N N N N N N 9.033 -21.673 25.094 -1.003 1.978 -1.560 H29 8ZI 68 8ZI H30 H30 H 0 1 N N N N N N 9.271 -20.450 23.801 -1.826 2.079 -3.135 H30 8ZI 69 8ZI H31 H31 H 0 1 N N N N N N 7.610 -20.948 24.272 -2.704 2.496 -1.644 H31 8ZI 70 8ZI H32 H32 H 0 1 N N N N N N 10.790 -21.460 21.570 -3.372 1.723 0.574 H32 8ZI 71 8ZI H33 H33 H 0 1 N N N N N N 12.841 -20.567 21.283 -5.820 1.525 1.684 H33 8ZI 72 8ZI H34 H34 H 0 1 N N N N N N 14.062 -20.700 22.594 -5.942 2.412 0.146 H34 8ZI 73 8ZI H35 H35 H 0 1 N N N N N N 11.942 -19.587 24.764 -8.392 -1.027 0.831 H35 8ZI 74 8ZI H36 H36 H 0 1 N N N N N N 13.704 -19.242 24.711 -6.640 -1.218 0.582 H36 8ZI 75 8ZI H37 H37 H 0 1 N N N N N N 12.521 -17.892 24.630 -7.251 -0.483 2.084 H37 8ZI 76 8ZI H38 H38 H 0 1 N N N N N N 10.535 -19.213 22.700 -8.563 0.218 -1.328 H38 8ZI 77 8ZI H39 H39 H 0 1 N N N N N N 11.157 -17.530 22.621 -7.544 1.649 -1.613 H39 8ZI 78 8ZI H40 H40 H 0 1 N N N N N N 11.310 -18.611 21.195 -6.811 0.027 -1.577 H40 8ZI 79 8ZI H41 H41 H 0 1 N N N N N N 5.345 -31.713 21.124 3.501 -1.250 -3.327 H41 8ZI 80 8ZI H42 H42 H 0 1 N N N N N N 6.885 -31.466 21.877 2.681 -2.690 -3.051 H42 8ZI 81 8ZI H43 H43 H 0 1 N N N N N N 9.549 -29.708 21.272 5.023 -1.720 0.777 H43 8ZI 82 8ZI H44 H44 H 0 1 N N N N N N 7.656 -25.355 19.979 4.112 2.869 -1.256 H44 8ZI 83 8ZI H45 H45 H 0 1 N N N N N N 5.397 -23.315 20.472 6.200 3.015 2.088 H45 8ZI 84 8ZI H46 H46 H 0 1 N N N N N N 3.895 -24.176 19.991 5.578 4.690 2.028 H46 8ZI 85 8ZI H47 H47 H 0 1 N N N N N N 5.026 -23.562 17.834 3.636 3.289 2.736 H47 8ZI 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8ZI O6 C28 DOUB N N 1 8ZI C28 N5 SING N N 2 8ZI C28 C25 SING N N 3 8ZI N5 C27 SING N N 4 8ZI O4 C23 DOUB N N 5 8ZI C24 C25 SING N N 6 8ZI C24 C21 SING N N 7 8ZI C25 C26 SING N N 8 8ZI C27 C26 SING N N 9 8ZI C23 C22 SING N N 10 8ZI C23 N4 SING N N 11 8ZI C22 C21 SING N N 12 8ZI C22 O5 SING N N 13 8ZI C21 N3 SING N N 14 8ZI N3 C1 SING N N 15 8ZI O3 C9 DOUB N N 16 8ZI C12 C11 SING N N 17 8ZI C1 C2 SING N N 18 8ZI C1 O1 DOUB N N 19 8ZI C2 N1 SING N N 20 8ZI C2 C3 SING N N 21 8ZI C9 N1 SING N N 22 8ZI C9 C10 SING N N 23 8ZI C20 C17 SING N N 24 8ZI C19 C17 SING N N 25 8ZI C16 C17 SING N N 26 8ZI C16 C15 SING N N 27 8ZI N2 C10 SING N N 28 8ZI N2 C15 SING N N 29 8ZI C6 C5 SING N N 30 8ZI N1 C8 SING N N 31 8ZI C17 C18 SING N N 32 8ZI C3 C5 SING N N 33 8ZI C3 C4 SING N N 34 8ZI C10 C11 SING N N 35 8ZI C15 O2 DOUB N N 36 8ZI C11 C13 SING N N 37 8ZI C11 C14 SING N N 38 8ZI C5 C7 SING N N 39 8ZI C5 C4 SING N N 40 8ZI C8 C4 SING N N 41 8ZI N3 H1 SING N N 42 8ZI C4 H2 SING N N 43 8ZI C6 H3 SING N N 44 8ZI C6 H4 SING N N 45 8ZI C6 H5 SING N N 46 8ZI C7 H6 SING N N 47 8ZI C7 H7 SING N N 48 8ZI C7 H8 SING N N 49 8ZI C8 H9 SING N N 50 8ZI C8 H10 SING N N 51 8ZI C10 H11 SING N N 52 8ZI C13 H12 SING N N 53 8ZI C13 H13 SING N N 54 8ZI C13 H14 SING N N 55 8ZI C20 H15 SING N N 56 8ZI C20 H16 SING N N 57 8ZI C20 H17 SING N N 58 8ZI C21 H18 SING N N 59 8ZI C22 H19 SING N N 60 8ZI C24 H20 SING N N 61 8ZI C24 H21 SING N N 62 8ZI C26 H22 SING N N 63 8ZI C26 H23 SING N N 64 8ZI C2 H24 SING N N 65 8ZI C3 H25 SING N N 66 8ZI C12 H26 SING N N 67 8ZI C12 H27 SING N N 68 8ZI C12 H28 SING N N 69 8ZI C14 H29 SING N N 70 8ZI C14 H30 SING N N 71 8ZI C14 H31 SING N N 72 8ZI N2 H32 SING N N 73 8ZI C16 H33 SING N N 74 8ZI C16 H34 SING N N 75 8ZI C18 H35 SING N N 76 8ZI C18 H36 SING N N 77 8ZI C18 H37 SING N N 78 8ZI C19 H38 SING N N 79 8ZI C19 H39 SING N N 80 8ZI C19 H40 SING N N 81 8ZI N4 H41 SING N N 82 8ZI N4 H42 SING N N 83 8ZI O5 H43 SING N N 84 8ZI C25 H44 SING N N 85 8ZI C27 H45 SING N N 86 8ZI C27 H46 SING N N 87 8ZI N5 H47 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 8ZI SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)C(O)C(N)=O)N(CC21)C(=O)C(NC(=O)CC(C)(C)C)C(C)(C)C" 8ZI InChI InChI 1.03 "InChI=1S/C28H47N5O6/c1-26(2,3)12-17(34)32-21(27(4,5)6)25(39)33-13-15-18(28(15,7)8)19(33)24(38)31-16(20(35)22(29)36)11-14-9-10-30-23(14)37/h14-16,18-21,35H,9-13H2,1-8H3,(H2,29,36)(H,30,37)(H,31,38)(H,32,34)/t14-,15-,16-,18-,19-,20+,21+/m0/s1" 8ZI InChIKey InChI 1.03 AQCHRJCCMXXILC-CMBJTQIYSA-N 8ZI SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)CC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(N)=O)C2(C)C)C(C)(C)C" 8ZI SMILES CACTVS 3.385 "CC(C)(C)CC(=O)N[CH](C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(N)=O)C2(C)C)C(C)(C)C" 8ZI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)CC(C)(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](C(=O)N)O)C" 8ZI SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)CC(C)(C)C)C(=O)NC(CC3CCNC3=O)C(C(=O)N)O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 8ZI "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(3,3-dimethylbutanoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 8ZI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-[(2~{S})-2-(3,3-dimethylbutanoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 8ZI "Create component" 2021-10-04 RCSB 8ZI "Initial release" 2022-10-05 RCSB 8ZI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 8ZI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C22 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #