data_92M # _chem_comp.id 92M _chem_comp.name ;9-cyclopentyl-2-(4-(4-hydroxypiperidin-1-yl)-2-methoxyphenylamino)-5-methyl-8,9-dihydro-5H-pyrimido[4,5-b][1,4]diazepin -6(7H)-one ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;9-cyclopentyl-2-{[4-(4-hydroxypiperidin-1-yl)-2-methoxyphenyl]amino}-5-methyl-5,7,8,9-tetrahydro-6H-pyrimido[4,5-b][1,4 ]diazepin-6-one ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-05-05 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 466.576 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 92M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3H9F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 92M C4 C4 C 0 1 Y N N 1.609 20.611 45.904 -3.212 -0.251 -0.148 C4 92M 1 92M C5 C5 C 0 1 Y N N 1.879 21.936 45.624 -2.810 -1.590 -0.072 C5 92M 2 92M C6 C6 C 0 1 Y N N 1.269 22.926 46.381 -1.460 -1.881 -0.034 C6 92M 3 92M N1 N1 N 0 1 Y N N 0.448 22.569 47.345 -0.589 -0.881 -0.082 N1 92M 4 92M N3 N3 N 0 1 Y N N 0.764 20.312 46.893 -2.283 0.696 -0.201 N3 92M 5 92M CAT CAT C 0 1 N N N -1.492 15.729 52.268 5.534 -0.952 1.330 CAT 92M 6 92M CAU CAU C 0 1 N N N -0.951 14.324 52.550 7.026 -1.163 1.597 CAU 92M 7 92M CAV CAV C 0 1 N N N -1.918 13.292 51.924 7.744 -1.431 0.271 CAV 92M 8 92M OAW OAW O 0 1 N N N -1.423 11.946 52.062 9.146 -1.572 0.508 OAW 92M 9 92M CAX CAX C 0 1 N N N -2.145 13.624 50.430 7.502 -0.255 -0.678 CAX 92M 10 92M CAY CAY C 0 1 N N N -1.233 14.757 49.932 5.996 -0.070 -0.880 CAY 92M 11 92M NAS NAS N 0 1 N N N -1.291 15.940 50.822 5.355 0.184 0.417 NAS 92M 12 92M CAR CAR C 0 1 Y N N -1.128 17.214 50.281 3.998 0.488 0.255 CAR 92M 13 92M CAZ CAZ C 0 1 Y N N -0.955 18.330 51.102 3.616 1.535 -0.573 CAZ 92M 14 92M CBA CBA C 0 1 Y N N -0.765 19.586 50.515 2.273 1.835 -0.733 CBA 92M 15 92M OBB OBB O 0 1 N N N -0.574 20.693 51.257 1.897 2.860 -1.544 OBB 92M 16 92M CBC CBC C 0 1 N N N -0.649 20.483 52.649 2.939 3.585 -2.200 CBC 92M 17 92M CAQ CAQ C 0 1 Y N N -1.122 17.380 48.897 3.035 -0.261 0.918 CAQ 92M 18 92M CAP CAP C 0 1 Y N N -0.954 18.640 48.317 1.695 0.036 0.759 CAP 92M 19 92M CAO CAO C 0 1 Y N N -0.757 19.748 49.128 1.310 1.085 -0.063 CAO 92M 20 92M NAN NAN N 0 1 N N N -0.622 20.975 48.621 -0.051 1.387 -0.223 NAN 92M 21 92M C2 C2 C 0 1 Y N N 0.197 21.274 47.616 -0.997 0.376 -0.167 C2 92M 22 92M NBG NBG N 0 1 N N N 2.678 22.416 44.683 -3.778 -2.606 -0.055 NBG 92M 23 92M CBH CBH C 0 1 N N N 3.469 23.624 44.978 -3.724 -3.680 0.940 CBH 92M 24 92M CAB CAB C 0 1 N N N 2.832 21.859 43.487 -4.761 -2.567 -0.981 CAB 92M 25 92M OAA OAA O 0 1 N N N 3.615 22.374 42.677 -5.653 -3.390 -0.962 OAA 92M 26 92M CAC CAC C 0 1 N N N 2.074 20.629 43.108 -4.740 -1.494 -2.036 CAC 92M 27 92M CAD CAD C 0 1 N N N 2.603 19.457 43.937 -5.187 -0.158 -1.450 CAD 92M 28 92M NAE NAE N 0 1 N N N 2.055 19.514 45.292 -4.558 0.067 -0.146 NAE 92M 29 92M CAF CAF C 0 1 N N N 1.830 18.195 45.935 -4.772 1.447 0.311 CAF 92M 30 92M CAG CAG C 0 1 N N N 3.062 17.288 45.828 -4.143 1.658 1.704 CAG 92M 31 92M CAH CAH C 0 1 N N N 2.532 15.876 45.736 -5.099 2.579 2.483 CAH 92M 32 92M CAI CAI C 0 1 N N N 1.141 15.993 45.152 -6.274 2.896 1.535 CAI 92M 33 92M CAJ CAJ C 0 1 N N N 0.785 17.487 45.130 -6.281 1.717 0.530 CAJ 92M 34 92M H6 H6 H 0 1 N N N 1.464 23.969 46.183 -1.120 -2.904 0.035 H6 92M 35 92M HAT HAT H 0 1 N N N -2.558 15.799 52.530 5.116 -1.851 0.877 HAT 92M 36 92M HATA HATA H 0 0 N N N -0.976 16.493 52.868 5.022 -0.747 2.270 HATA 92M 37 92M HAU HAU H 0 1 N N N 0.050 14.214 52.107 7.442 -0.269 2.062 HAU 92M 38 92M HAUA HAUA H 0 0 N N N -0.876 14.160 53.635 7.160 -2.016 2.262 HAUA 92M 39 92M HAV HAV H 0 1 N N N -2.874 13.353 52.465 7.356 -2.347 -0.175 HAV 92M 40 92M HOAW HOAW H 0 0 N N N -1.314 11.558 51.202 9.665 -1.744 -0.290 HOAW 92M 41 92M HAX HAX H 0 1 N N N -1.935 12.722 49.837 7.925 0.653 -0.249 HAX 92M 42 92M HAXA HAXA H 0 0 N N N -3.187 13.957 50.315 7.975 -0.459 -1.639 HAXA 92M 43 92M HAY HAY H 0 1 N N N -0.197 14.389 49.902 5.819 0.775 -1.544 HAY 92M 44 92M HAYA HAYA H 0 0 N N N -1.578 15.062 48.933 5.575 -0.974 -1.322 HAYA 92M 45 92M HAZ HAZ H 0 1 N N N -0.968 18.225 52.177 4.365 2.115 -1.092 HAZ 92M 46 92M HBC HBC H 0 1 N N N -0.669 19.403 52.857 2.503 4.373 -2.814 HBC 92M 47 92M HBCA HBCA H 0 0 N N N 0.228 20.934 53.135 3.598 4.029 -1.454 HBCA 92M 48 92M HBCB HBCB H 0 0 N N N -1.566 20.948 53.041 3.511 2.906 -2.832 HBCB 92M 49 92M HAQ HAQ H 0 1 N N N -1.250 16.517 48.260 3.334 -1.078 1.558 HAQ 92M 50 92M HAP HAP H 0 1 N N N -0.977 18.751 47.243 0.948 -0.548 1.275 HAP 92M 51 92M HNAN HNAN H 0 0 N N N -1.168 21.712 49.019 -0.330 2.304 -0.374 HNAN 92M 52 92M HBH HBH H 0 1 N N N 3.666 23.679 46.059 -4.289 -3.384 1.824 HBH 92M 53 92M HBHA HBHA H 0 0 N N N 4.424 23.579 44.433 -4.156 -4.587 0.519 HBHA 92M 54 92M HBHB HBHB H 0 0 N N N 2.908 24.516 44.662 -2.687 -3.866 1.218 HBHB 92M 55 92M HAC HAC H 0 1 N N N 1.003 20.775 43.310 -3.728 -1.394 -2.428 HAC 92M 56 92M HACA HACA H 0 0 N N N 2.206 20.421 42.036 -5.412 -1.774 -2.848 HACA 92M 57 92M HAD HAD H 0 1 N N N 2.302 18.511 43.463 -4.904 0.646 -2.130 HAD 92M 58 92M HADA HADA H 0 0 N N N 3.700 19.517 43.988 -6.271 -0.162 -1.331 HADA 92M 59 92M HAF HAF H 0 1 N N N 1.570 18.373 46.989 -4.355 2.154 -0.406 HAF 92M 60 92M HAG HAG H 0 1 N N N 3.653 17.540 44.935 -4.045 0.702 2.219 HAG 92M 61 92M HAGA HAGA H 0 0 N N N 3.728 17.411 46.695 -3.166 2.131 1.606 HAGA 92M 62 92M HAH HAH H 0 1 N N N 3.175 15.261 45.089 -5.465 2.070 3.374 HAH 92M 63 92M HAHA HAHA H 0 0 N N N 2.515 15.387 46.721 -4.586 3.500 2.762 HAHA 92M 64 92M HAI HAI H 0 1 N N N 1.120 15.581 44.132 -7.213 2.930 2.089 HAI 92M 65 92M HAIA HAIA H 0 0 N N N 0.415 15.427 45.755 -6.103 3.839 1.016 HAIA 92M 66 92M HAJ HAJ H 0 1 N N N -0.211 17.649 45.569 -6.761 2.009 -0.404 HAJ 92M 67 92M HAJA HAJA H 0 0 N N N 0.758 17.869 44.099 -6.771 0.845 0.962 HAJA 92M 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 92M C4 C5 DOUB Y N 1 92M C4 N3 SING Y N 2 92M C4 NAE SING N N 3 92M C5 C6 SING Y N 4 92M C5 NBG SING N N 5 92M C6 N1 DOUB Y N 6 92M N1 C2 SING Y N 7 92M N3 C2 DOUB Y N 8 92M CAT CAU SING N N 9 92M CAT NAS SING N N 10 92M CAU CAV SING N N 11 92M CAV OAW SING N N 12 92M CAV CAX SING N N 13 92M CAX CAY SING N N 14 92M CAY NAS SING N N 15 92M NAS CAR SING N N 16 92M CAR CAZ DOUB Y N 17 92M CAR CAQ SING Y N 18 92M CAZ CBA SING Y N 19 92M CBA OBB SING N N 20 92M CBA CAO DOUB Y N 21 92M OBB CBC SING N N 22 92M CAQ CAP DOUB Y N 23 92M CAP CAO SING Y N 24 92M CAO NAN SING N N 25 92M NAN C2 SING N N 26 92M NBG CBH SING N N 27 92M NBG CAB SING N N 28 92M CAB OAA DOUB N N 29 92M CAB CAC SING N N 30 92M CAC CAD SING N N 31 92M CAD NAE SING N N 32 92M NAE CAF SING N N 33 92M CAF CAG SING N N 34 92M CAF CAJ SING N N 35 92M CAG CAH SING N N 36 92M CAH CAI SING N N 37 92M CAI CAJ SING N N 38 92M C6 H6 SING N N 39 92M CAT HAT SING N N 40 92M CAT HATA SING N N 41 92M CAU HAU SING N N 42 92M CAU HAUA SING N N 43 92M CAV HAV SING N N 44 92M OAW HOAW SING N N 45 92M CAX HAX SING N N 46 92M CAX HAXA SING N N 47 92M CAY HAY SING N N 48 92M CAY HAYA SING N N 49 92M CAZ HAZ SING N N 50 92M CBC HBC SING N N 51 92M CBC HBCA SING N N 52 92M CBC HBCB SING N N 53 92M CAQ HAQ SING N N 54 92M CAP HAP SING N N 55 92M NAN HNAN SING N N 56 92M CBH HBH SING N N 57 92M CBH HBHA SING N N 58 92M CBH HBHB SING N N 59 92M CAC HAC SING N N 60 92M CAC HACA SING N N 61 92M CAD HAD SING N N 62 92M CAD HADA SING N N 63 92M CAF HAF SING N N 64 92M CAG HAG SING N N 65 92M CAG HAGA SING N N 66 92M CAH HAH SING N N 67 92M CAH HAHA SING N N 68 92M CAI HAI SING N N 69 92M CAI HAIA SING N N 70 92M CAJ HAJ SING N N 71 92M CAJ HAJA SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 92M SMILES ACDLabs 10.04 "O=C4N(c1c(nc(nc1)Nc3ccc(N2CCC(O)CC2)cc3OC)N(CC4)C5CCCC5)C" 92M SMILES_CANONICAL CACTVS 3.341 "COc1cc(ccc1Nc2ncc3N(C)C(=O)CCN(C4CCCC4)c3n2)N5CCC(O)CC5" 92M SMILES CACTVS 3.341 "COc1cc(ccc1Nc2ncc3N(C)C(=O)CCN(C4CCCC4)c3n2)N5CCC(O)CC5" 92M SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN1c2cnc(nc2N(CCC1=O)C3CCCC3)Nc4ccc(cc4OC)N5CCC(CC5)O" 92M SMILES "OpenEye OEToolkits" 1.5.0 "CN1c2cnc(nc2N(CCC1=O)C3CCCC3)Nc4ccc(cc4OC)N5CCC(CC5)O" 92M InChI InChI 1.03 "InChI=1S/C25H34N6O3/c1-29-21-16-26-25(28-24(21)31(14-11-23(29)33)17-5-3-4-6-17)27-20-8-7-18(15-22(20)34-2)30-12-9-19(32)10-13-30/h7-8,15-17,19,32H,3-6,9-14H2,1-2H3,(H,26,27,28)" 92M InChIKey InChI 1.03 KBILTEUAXWLXKP-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 92M "SYSTEMATIC NAME" ACDLabs 10.04 "9-cyclopentyl-2-{[4-(4-hydroxypiperidin-1-yl)-2-methoxyphenyl]amino}-5-methyl-5,7,8,9-tetrahydro-6H-pyrimido[4,5-b][1,4]diazepin-6-one" 92M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "9-cyclopentyl-2-[[4-(4-hydroxypiperidin-1-yl)-2-methoxy-phenyl]amino]-5-methyl-7,8-dihydropyrimido[4,5-b][1,4]diazepin-6-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 92M "Create component" 2009-05-05 RCSB 92M "Modify aromatic_flag" 2011-06-04 RCSB 92M "Modify descriptor" 2011-06-04 RCSB 92M "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 92M _pdbx_chem_comp_synonyms.name "9-cyclopentyl-2-{[4-(4-hydroxypiperidin-1-yl)-2-methoxyphenyl]amino}-5-methyl-5,7,8,9-tetrahydro-6H-pyrimido[4,5-b][1,4]diazepin-6-one" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##