data_952
#
_chem_comp.id 952
_chem_comp.name "5-methyl-1-[(3~{S})-1-[(3-phenoxyphenyl)methyl]piperidin-3-yl]pyrimidine-2,4-dione"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H25 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-04-21
_chem_comp.pdbx_modified_date 2018-03-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 391.463
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 952
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5NQ5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
952 O2 O1 O 0 1 N N N -24.826 28.552 -12.082 -7.911 0.886 -0.807 O2 952 1
952 C22 C1 C 0 1 N N N -24.776 29.388 -11.182 -6.757 0.705 -0.464 C22 952 2
952 C1 C2 C 0 1 N N N -24.074 29.218 -9.928 -5.997 1.770 0.078 C1 952 3
952 C C3 C 0 1 N N N -23.328 27.935 -9.685 -6.607 3.138 0.239 C 952 4
952 N2 N1 N 0 1 N N N -25.432 30.597 -11.328 -6.192 -0.512 -0.593 N2 952 5
952 C21 C4 C 0 1 N N N -25.482 31.627 -10.424 -4.916 -0.712 -0.214 C21 952 6
952 O1 O2 O 0 1 N N N -26.082 32.667 -10.654 -4.420 -1.815 -0.336 O1 952 7
952 N N2 N 0 1 N N N -24.795 31.399 -9.252 -4.182 0.293 0.298 N 952 8
952 C2 C5 C 0 1 N N N -24.119 30.218 -9.035 -4.720 1.542 0.451 C2 952 9
952 C3 C6 C 0 1 N N S -24.782 32.468 -8.231 -2.796 0.046 0.702 C3 952 10
952 C7 C7 C 0 1 N N N -23.397 33.072 -8.194 -1.988 -0.428 -0.508 C7 952 11
952 N1 N3 N 0 1 N N N -23.290 34.148 -7.204 -0.603 -0.696 -0.099 N1 952 12
952 C6 C8 C 0 1 N N N -23.637 33.649 -5.867 -0.543 -1.764 0.907 C6 952 13
952 C5 C9 C 0 1 N N N -25.021 33.041 -5.826 -1.308 -1.330 2.159 C5 952 14
952 C4 C10 C 0 1 N N N -25.140 31.926 -6.857 -2.764 -1.036 1.786 C4 952 15
952 C8 C11 C 0 1 N N N -21.951 34.753 -7.201 0.236 -1.020 -1.261 C8 952 16
952 C9 C12 C 0 1 Y N N -21.603 35.475 -8.482 1.684 -1.047 -0.844 C9 952 17
952 C14 C13 C 0 1 Y N N -20.481 35.118 -9.212 2.252 -2.225 -0.396 C14 952 18
952 C13 C14 C 0 1 Y N N -20.150 35.789 -10.376 3.580 -2.253 -0.013 C13 952 19
952 C12 C15 C 0 1 Y N N -20.933 36.836 -10.829 4.343 -1.104 -0.076 C12 952 20
952 C11 C16 C 0 1 Y N N -22.050 37.201 -10.098 3.775 0.081 -0.525 C11 952 21
952 C10 C17 C 0 1 Y N N -22.394 36.522 -8.938 2.444 0.105 -0.914 C10 952 22
952 O O3 O 0 1 N N N -22.817 38.301 -10.486 4.523 1.213 -0.588 O 952 23
952 C15 C18 C 0 1 Y N N -23.631 38.227 -11.618 5.827 1.138 -0.213 C15 952 24
952 C20 C19 C 0 1 Y N N -23.949 39.402 -12.278 6.804 0.832 -1.150 C20 952 25
952 C19 C20 C 0 1 Y N N -24.789 39.358 -13.377 8.128 0.756 -0.766 C19 952 26
952 C18 C21 C 0 1 Y N N -25.302 38.157 -13.815 8.481 0.985 0.551 C18 952 27
952 C17 C22 C 0 1 Y N N -24.975 36.989 -13.159 7.510 1.290 1.487 C17 952 28
952 C16 C23 C 0 1 Y N N -24.137 37.014 -12.057 6.185 1.373 1.107 C16 952 29
952 H2 H1 H 0 1 N N N -22.854 27.968 -8.693 -7.638 3.121 -0.115 H2 952 30
952 H1 H2 H 0 1 N N N -24.030 27.089 -9.728 -6.589 3.423 1.291 H1 952 31
952 H3 H3 H 0 1 N N N -22.554 27.809 -10.457 -6.035 3.861 -0.343 H3 952 32
952 H24 H4 H 0 1 N N N -25.924 30.735 -12.188 -6.707 -1.248 -0.961 H24 952 33
952 H4 H5 H 0 1 N N N -23.598 30.091 -8.097 -4.125 2.342 0.867 H4 952 34
952 H H6 H 0 1 N N N -25.507 33.248 -8.507 -2.361 0.966 1.092 H 952 35
952 H12 H7 H 0 1 N N N -22.673 32.284 -7.940 -2.432 -1.340 -0.907 H12 952 36
952 H11 H8 H 0 1 N N N -23.162 33.480 -9.188 -1.996 0.345 -1.276 H11 952 37
952 H9 H10 H 0 1 N N N -22.904 32.883 -5.574 -0.994 -2.670 0.502 H9 952 38
952 H10 H11 H 0 1 N N N -23.597 34.486 -5.155 0.497 -1.961 1.166 H10 952 39
952 H8 H12 H 0 1 N N N -25.766 33.820 -6.046 -1.277 -2.130 2.900 H8 952 40
952 H7 H13 H 0 1 N N N -25.207 32.629 -4.823 -0.849 -0.433 2.573 H7 952 41
952 H6 H14 H 0 1 N N N -26.172 31.547 -6.870 -3.302 -0.684 2.667 H6 952 42
952 H5 H15 H 0 1 N N N -24.452 31.109 -6.594 -3.234 -1.944 1.408 H5 952 43
952 H14 H16 H 0 1 N N N -21.211 33.955 -7.041 -0.048 -1.997 -1.653 H14 952 44
952 H13 H17 H 0 1 N N N -21.898 35.474 -6.372 0.094 -0.264 -2.033 H13 952 45
952 H18 H18 H 0 1 N N N -19.857 34.306 -8.868 1.657 -3.125 -0.346 H18 952 46
952 H17 H19 H 0 1 N N N -19.274 35.493 -10.935 4.021 -3.175 0.336 H17 952 47
952 H16 H20 H 0 1 N N N -20.677 37.360 -11.738 5.380 -1.126 0.223 H16 952 48
952 H15 H21 H 0 1 N N N -23.279 36.808 -8.388 1.999 1.025 -1.264 H15 952 49
952 H23 H22 H 0 1 N N N -23.545 40.344 -11.938 6.528 0.653 -2.179 H23 952 50
952 H22 H23 H 0 1 N N N -25.044 40.271 -13.894 8.889 0.518 -1.495 H22 952 51
952 H21 H24 H 0 1 N N N -25.960 38.130 -14.671 9.518 0.926 0.850 H21 952 52
952 H20 H25 H 0 1 N N N -25.375 36.048 -13.507 7.789 1.468 2.516 H20 952 53
952 H19 H26 H 0 1 N N N -23.881 36.098 -11.545 5.427 1.611 1.838 H19 952 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
952 C18 C19 DOUB Y N 1
952 C18 C17 SING Y N 2
952 C19 C20 SING Y N 3
952 C17 C16 DOUB Y N 4
952 C20 C15 DOUB Y N 5
952 O2 C22 DOUB N N 6
952 C16 C15 SING Y N 7
952 C15 O SING N N 8
952 N2 C22 SING N N 9
952 N2 C21 SING N N 10
952 C22 C1 SING N N 11
952 C12 C13 DOUB Y N 12
952 C12 C11 SING Y N 13
952 O1 C21 DOUB N N 14
952 O C11 SING N N 15
952 C21 N SING N N 16
952 C13 C14 SING Y N 17
952 C11 C10 DOUB Y N 18
952 C1 C SING N N 19
952 C1 C2 DOUB N N 20
952 N C2 SING N N 21
952 N C3 SING N N 22
952 C14 C9 DOUB Y N 23
952 C10 C9 SING Y N 24
952 C9 C8 SING N N 25
952 C3 C7 SING N N 26
952 C3 C4 SING N N 27
952 C7 N1 SING N N 28
952 N1 C8 SING N N 29
952 N1 C6 SING N N 30
952 C4 C5 SING N N 31
952 C6 C5 SING N N 32
952 C H2 SING N N 33
952 C H1 SING N N 34
952 C H3 SING N N 35
952 N2 H24 SING N N 36
952 C2 H4 SING N N 37
952 C3 H SING N N 38
952 C7 H12 SING N N 39
952 C7 H11 SING N N 40
952 C6 H9 SING N N 41
952 C6 H10 SING N N 42
952 C5 H8 SING N N 43
952 C5 H7 SING N N 44
952 C4 H6 SING N N 45
952 C4 H5 SING N N 46
952 C8 H14 SING N N 47
952 C8 H13 SING N N 48
952 C14 H18 SING N N 49
952 C13 H17 SING N N 50
952 C12 H16 SING N N 51
952 C10 H15 SING N N 52
952 C20 H23 SING N N 53
952 C19 H22 SING N N 54
952 C18 H21 SING N N 55
952 C17 H20 SING N N 56
952 C16 H19 SING N N 57
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
952 InChI InChI 1.03 "InChI=1S/C23H25N3O3/c1-17-14-26(23(28)24-22(17)27)19-8-6-12-25(16-19)15-18-7-5-11-21(13-18)29-20-9-3-2-4-10-20/h2-5,7,9-11,13-14,19H,6,8,12,15-16H2,1H3,(H,24,27,28)/t19-/m0/s1"
952 InChIKey InChI 1.03 UVSXXFBEAJISCP-IBGZPJMESA-N
952 SMILES_CANONICAL CACTVS 3.385 "CC1=CN([C@H]2CCCN(C2)Cc3cccc(Oc4ccccc4)c3)C(=O)NC1=O"
952 SMILES CACTVS 3.385 "CC1=CN([CH]2CCCN(C2)Cc3cccc(Oc4ccccc4)c3)C(=O)NC1=O"
952 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)[C@H]2CCCN(C2)Cc3cccc(c3)Oc4ccccc4"
952 SMILES "OpenEye OEToolkits" 2.0.6 "CC1=CN(C(=O)NC1=O)C2CCCN(C2)Cc3cccc(c3)Oc4ccccc4"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
952 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "5-methyl-1-[(3~{S})-1-[(3-phenoxyphenyl)methyl]piperidin-3-yl]pyrimidine-2,4-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
952 "Create component" 2017-04-21 RCSB
952 "Initial release" 2018-03-21 RCSB
#