data_98F # _chem_comp.id 98F _chem_comp.name "9-[(1R,6R,8R,13E,15R,17R,18R)-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,16-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadec-13-en-8-yl]purin-6-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H22 F2 N10 O9 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-10 _chem_comp.pdbx_modified_date 2022-10-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 658.405 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 98F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Q85 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 98F C10 C1 C 0 1 Y N N -14.029 21.046 -8.708 -9.177 0.920 0.329 C10 98F 1 98F C11 C2 C 0 1 Y N N -16.104 21.209 -7.684 -7.128 -0.121 0.369 C11 98F 2 98F C12 C3 C 0 1 Y N N -16.085 19.824 -7.398 -7.577 -0.940 1.418 C12 98F 3 98F C13 C4 C 0 1 Y N N -14.941 19.076 -7.825 -8.890 -0.761 1.885 C13 98F 4 98F C14 C5 C 0 1 Y N N -17.947 20.674 -6.625 -5.530 -1.510 0.984 C14 98F 5 98F C16 C6 C 0 1 N N R -18.092 23.474 -8.461 -4.249 1.315 -0.334 C16 98F 6 98F C15 C7 C 0 1 N N R -19.596 22.872 -8.564 -2.742 1.018 -0.470 C15 98F 7 98F C17 C8 C 0 1 N N R -17.725 23.155 -7.268 -4.945 0.066 -0.898 C17 98F 8 98F C20 C9 C 0 1 N N N -22.649 22.394 -6.878 -0.647 -1.582 -1.620 C20 98F 9 98F C7 C10 C 0 1 N N R -22.892 18.013 -10.145 4.787 -0.065 -0.642 C7 98F 10 98F N9 N1 N 0 1 N N N -14.844 17.599 -7.559 -9.388 -1.538 2.916 N9 98F 11 98F C4 C11 C 0 1 Y N N -20.436 17.983 -10.803 5.794 1.579 0.987 C4 98F 12 98F N3 N2 N 0 1 Y N N -19.391 17.128 -10.747 6.928 1.760 1.599 N3 98F 13 98F C2 C12 C 0 1 Y N N -19.819 15.975 -10.168 7.793 0.779 1.245 C2 98F 14 98F N2 N3 N 0 1 Y N N -21.517 17.409 -10.279 5.861 0.467 0.201 N2 98F 15 98F N1 N4 N 0 1 Y N N -21.869 15.146 -9.278 7.757 -1.115 -0.158 N1 98F 16 98F C6 C13 C 0 1 N N R -23.118 18.320 -8.907 4.014 -1.155 0.119 C6 98F 17 98F C5 C14 C 0 1 N N R -23.221 20.010 -8.788 2.542 -0.917 -0.260 C5 98F 18 98F N7 N5 N 0 1 Y N N -17.245 19.529 -6.742 -6.554 -1.765 1.746 N7 98F 19 98F C8 C15 C 0 1 N N R -23.514 20.433 -9.913 2.521 0.452 -0.953 C8 98F 20 98F N N6 N 0 1 Y N N -19.998 13.787 -9.243 9.676 -0.608 1.026 N 98F 21 98F C C16 C 0 1 Y N N -21.289 13.996 -8.976 9.002 -1.369 0.183 C 98F 22 98F O O1 O 0 1 N N N -19.188 21.663 -11.427 -0.721 2.756 0.917 O 98F 23 98F C1 C17 C 0 1 Y N N -21.175 16.151 -9.868 7.119 -0.062 0.344 C1 98F 24 98F C18 C18 C 0 1 N N R -20.168 23.244 -7.466 -2.670 -0.253 -1.334 C18 98F 25 98F C19 C19 C 0 1 N N N -21.109 22.099 -7.140 -1.593 -1.166 -0.816 C19 98F 26 98F C3 C20 C 0 1 Y N N -19.225 14.731 -9.831 9.122 0.466 1.577 C3 98F 27 98F C9 C21 C 0 1 N N N -22.762 21.744 -10.233 1.594 1.406 -0.194 C9 98F 28 98F F1 F1 F 0 1 N N N -18.170 24.860 -8.582 -4.593 2.445 -1.083 F1 98F 29 98F F2 F2 F 0 1 N N N -24.298 17.791 -8.496 4.426 -2.426 -0.296 F2 98F 30 98F N4 N7 N 0 1 Y N N -13.950 19.724 -8.470 -9.643 0.173 1.314 N4 98F 31 98F N5 N8 N 0 1 Y N N -15.060 21.778 -8.337 -7.955 0.787 -0.140 N5 98F 32 98F N6 N9 N 0 1 Y N N -17.267 21.700 -7.194 -5.835 -0.503 0.117 N6 98F 33 98F O1 O2 O 0 1 N N N -23.006 19.303 -10.956 3.850 0.968 -0.948 O1 98F 34 98F O10 O3 O 0 1 N N N -24.220 20.323 -7.798 2.086 -1.934 -1.156 O10 98F 35 98F O2 O4 O 0 1 N N N -21.713 21.451 -11.109 0.549 1.845 -1.064 O2 98F 36 98F O22 O5 O 0 1 N N N -24.906 21.242 -5.533 0.669 -3.931 -1.773 O22 98F 37 98F O3 O6 O 0 1 N N N -20.666 23.326 -12.306 -0.539 4.237 -1.119 O3 98F 38 98F O4 O7 O 0 1 N N N -22.893 19.894 -5.885 0.397 -2.997 0.557 O4 98F 39 98F O5 O8 O 0 1 N N N -18.996 23.307 -6.424 -3.948 -0.893 -1.255 O5 98F 40 98F O7 O9 O 0 1 N N N -20.320 23.386 -9.768 -2.069 2.099 -1.114 O7 98F 41 98F P P1 P 0 1 N N N -20.442 22.367 -11.107 -0.696 2.734 -0.563 P 98F 42 98F P1 P2 P 0 1 N N N -23.775 20.935 -6.531 0.662 -2.671 -0.997 P1 98F 43 98F N10 N10 N 0 1 N N N -17.781 14.464 -10.118 9.837 1.258 2.458 N10 98F 44 98F H1 H1 H 0 1 N N N -13.212 21.528 -9.225 -9.825 1.665 -0.110 H1 98F 45 98F H2 H2 H 0 1 N N N -18.912 20.761 -6.147 -4.580 -2.021 1.031 H2 98F 46 98F H3 H3 H 0 1 N N N -17.475 23.024 -9.253 -4.515 1.458 0.713 H3 98F 47 98F H4 H4 H 0 1 N N N -19.510 21.778 -8.637 -2.306 0.830 0.510 H4 98F 48 98F H5 H5 H 0 1 N N N -16.938 23.809 -6.865 -5.523 0.336 -1.782 H5 98F 49 98F H6 H6 H 0 1 N N N -23.035 23.403 -6.899 -0.645 -1.272 -2.655 H6 98F 50 98F H7 H7 H 0 1 N N N -23.631 17.295 -10.530 5.205 -0.477 -1.560 H7 98F 51 98F H8 H8 H 0 1 N N N -13.981 17.250 -7.925 -8.828 -2.217 3.325 H8 98F 52 98F H9 H9 H 0 1 N N N -14.878 17.435 -6.573 -10.296 -1.405 3.230 H9 98F 53 98F H10 H10 H 0 1 N N N -20.400 18.982 -11.212 4.926 2.213 1.090 H10 98F 54 98F H11 H11 H 0 1 N N N -22.295 18.007 -8.247 4.155 -1.042 1.194 H11 98F 55 98F H13 H13 H 0 1 N N N -22.237 20.359 -8.441 1.917 -0.897 0.634 H13 98F 56 98F H15 H15 H 0 1 N N N -24.592 20.587 -10.070 2.170 0.343 -1.980 H15 98F 57 98F H16 H16 H 0 1 N N N -21.869 13.215 -8.507 9.491 -2.233 -0.243 H16 98F 58 98F H17 H17 H 0 1 N N N -20.702 24.205 -7.512 -2.461 0.019 -2.368 H17 98F 59 98F H18 H18 H 0 1 N N N -20.734 21.088 -7.086 -1.598 -1.476 0.219 H18 98F 60 98F H19 H19 H 0 1 N N N -23.450 22.461 -10.705 1.161 0.887 0.661 H19 98F 61 98F H20 H20 H 0 1 N N N -22.361 22.177 -9.305 2.164 2.267 0.153 H20 98F 62 98F H21 H21 H 0 1 N N N -19.958 23.223 -12.931 0.268 4.683 -0.826 H21 98F 63 98F H22 H22 H 0 1 N N N -23.237 19.675 -5.027 -0.447 -3.439 0.728 H22 98F 64 98F H23 H23 H 0 1 N N N -17.545 13.541 -9.813 9.421 2.040 2.855 H23 98F 65 98F H24 H24 H 0 1 N N N -17.617 14.543 -11.101 10.754 1.032 2.680 H24 98F 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 98F C10 N4 SING Y N 1 98F C10 N5 DOUB Y N 2 98F C11 C12 DOUB Y N 3 98F C11 N5 SING Y N 4 98F C11 N6 SING Y N 5 98F C12 C13 SING Y N 6 98F C12 N7 SING Y N 7 98F C13 N9 SING N N 8 98F C13 N4 DOUB Y N 9 98F C14 N7 DOUB Y N 10 98F C14 N6 SING Y N 11 98F C16 C15 SING N N 12 98F C16 C17 SING N N 13 98F C16 F1 SING N N 14 98F C15 C18 SING N N 15 98F C15 O7 SING N N 16 98F C17 N6 SING N N 17 98F C17 O5 SING N N 18 98F C20 C19 DOUB N E 19 98F C20 P1 SING N N 20 98F C7 N2 SING N N 21 98F C7 C6 SING N N 22 98F C7 O1 SING N N 23 98F C4 N3 DOUB Y N 24 98F C4 N2 SING Y N 25 98F N3 C2 SING Y N 26 98F C2 C1 DOUB Y N 27 98F C2 C3 SING Y N 28 98F N2 C1 SING Y N 29 98F N1 C DOUB Y N 30 98F N1 C1 SING Y N 31 98F C6 F2 SING N N 32 98F C5 C8 SING N N 33 98F C5 O10 SING N N 34 98F C8 C9 SING N N 35 98F C8 O1 SING N N 36 98F N C SING Y N 37 98F N C3 DOUB Y N 38 98F O P DOUB N N 39 98F C18 C19 SING N N 40 98F C18 O5 SING N N 41 98F C3 N10 SING N N 42 98F C9 O2 SING N N 43 98F O10 P1 SING N N 44 98F O2 P SING N N 45 98F O22 P1 DOUB N N 46 98F O3 P SING N N 47 98F O4 P1 SING N N 48 98F O7 P SING N N 49 98F C10 H1 SING N N 50 98F C14 H2 SING N N 51 98F C16 H3 SING N N 52 98F C15 H4 SING N N 53 98F C17 H5 SING N N 54 98F C20 H6 SING N N 55 98F C7 H7 SING N N 56 98F N9 H8 SING N N 57 98F N9 H9 SING N N 58 98F C4 H10 SING N N 59 98F C6 H11 SING N N 60 98F C5 H13 SING N N 61 98F C8 H15 SING N N 62 98F C H16 SING N N 63 98F C18 H17 SING N N 64 98F C19 H18 SING N N 65 98F C9 H19 SING N N 66 98F C9 H20 SING N N 67 98F O3 H21 SING N N 68 98F O4 H22 SING N N 69 98F N10 H23 SING N N 70 98F N10 H24 SING N N 71 98F C5 C6 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 98F InChI InChI 1.06 "InChI=1S/C21H22F2N10O9P2/c22-10-14-8(39-20(10)32-6-30-12-16(24)26-4-28-18(12)32)1-2-43(34,35)41-15-9(3-38-44(36,37)42-14)40-21(11(15)23)33-7-31-13-17(25)27-5-29-19(13)33/h1-2,4-11,14-15,20-21H,3H2,(H,34,35)(H,36,37)(H2,24,26,28)(H2,25,27,29)/b2-1+/t8-,9-,10-,11-,14-,15-,20-,21-/m1/s1" 98F InChIKey InChI 1.06 ZKWIHCLAWIBCNH-FAOXOZTKSA-N 98F SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5/C=C/[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7c(N)ncnc67" 98F SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5C=C[P](O)(=O)O[CH]4[CH]3F)n6cnc7c(N)ncnc67" 98F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H](/C=C/P(=O)(O4)O)O[C@H]([C@@H]5F)n6cnc7c6ncnc7N)O)F)N" 98F SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(C=CP(=O)(O4)O)OC(C5F)n6cnc7c6ncnc7N)O)F)N" # _pdbx_chem_comp_identifier.comp_id 98F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},13~{E},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,16-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadec-13-en-8-yl]purin-6-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 98F "Create component" 2021-11-10 PDBE 98F "Other modification" 2021-11-26 PDBE 98F "Modify descriptor" 2022-08-22 RCSB 98F "Initial release" 2022-10-19 RCSB #