data_98P # _chem_comp.id 98P _chem_comp.name "D-phenylalanyl-N-[(4-chloro-1-methylpyridinium-3-yl)methyl]-L-prolinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H26 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2011-03-18 _chem_comp.pdbx_modified_date 2012-03-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.910 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 98P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3QWC _chem_comp.pdbx_subcomponent_list "DPN PRO NNT" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 98P N22 N22 N 0 1 N N N 16.397 -15.347 23.169 3.380 -1.393 -1.415 N DPN 1 98P C3 C3 C 0 1 N N R 17.610 -14.552 23.298 3.235 -0.230 -0.531 CA DPN 2 98P C4 C4 C 0 1 N N N 17.358 -13.195 22.697 1.783 -0.053 -0.167 C DPN 3 98P O26 O26 O 0 1 N N N 16.361 -12.552 23.019 1.012 -0.983 -0.281 O DPN 4 98P C2 C2 C 0 1 N N N 18.005 -14.456 24.778 4.056 -0.450 0.742 CB DPN 5 98P C1 C1 C 0 1 Y N N 19.432 -13.963 24.900 5.520 -0.503 0.391 CG DPN 6 98P C5 C5 C 0 1 Y N N 20.482 -14.706 24.368 6.272 0.656 0.384 CD1 DPN 7 98P C9 C9 C 0 1 Y N N 19.699 -12.772 25.561 6.113 -1.713 0.083 CD2 DPN 8 98P C6 C6 C 0 1 Y N N 21.791 -14.242 24.487 7.616 0.607 0.062 CE1 DPN 9 98P C8 C8 C 0 1 Y N N 21.003 -12.310 25.677 7.456 -1.762 -0.243 CE2 DPN 10 98P C7 C7 C 0 1 Y N N 22.054 -13.048 25.140 8.208 -0.602 -0.251 CZ DPN 11 98P N23 N23 N 0 1 N N N 18.246 -12.742 21.805 1.341 1.137 0.284 N PRO 12 98P C10 C10 C 0 1 N N S 18.034 -11.437 21.177 -0.064 1.480 0.569 CA PRO 13 98P C11 C11 C 0 1 N N N 16.711 -11.431 20.477 -0.978 0.832 -0.440 C PRO 14 98P O27 O27 O 0 1 N N N 16.390 -12.385 19.773 -0.562 0.558 -1.546 O PRO 15 98P C14 C14 C 0 1 N N N 19.165 -11.295 20.167 -0.130 3.023 0.443 CB PRO 16 98P C15 C15 C 0 1 N N N 20.207 -12.336 20.557 1.240 3.442 1.038 CG PRO 17 98P C16 C16 C 0 1 N N N 19.459 -13.413 21.327 2.180 2.309 0.574 CD PRO 18 98P C12 C12 C 0 1 N N N 14.597 -10.233 20.069 -3.144 -0.071 -1.094 C12 NNT 19 98P C13 C13 C 0 1 Y N N 13.611 -11.009 20.921 -4.508 -0.268 -0.484 C13 NNT 20 98P C17 C17 C 0 1 Y N N 13.433 -12.373 20.749 -5.559 0.553 -0.842 C17 NNT 21 98P C18 C18 C 0 1 N N N 12.395 -14.491 21.305 -7.845 1.278 -0.719 C18 NNT 22 98P C19 C19 C 0 1 Y N N 11.835 -12.431 22.453 -6.998 -0.561 0.572 C19 NNT 23 98P C20 C20 C 0 1 Y N N 11.972 -11.069 22.673 -5.997 -1.424 0.975 C20 NNT 24 98P C21 C21 C 0 1 Y N N 12.868 -10.369 21.882 -4.725 -1.281 0.440 C21 NNT 25 98P N24 N24 N 0 1 N N N 15.919 -10.375 20.670 -2.256 0.558 -0.114 N24 NNT 26 98P N25 N25 N 1 1 Y N N 12.562 -13.048 21.509 -6.756 0.387 -0.313 N25 NNT 27 98P CL28 CL28 CL 0 0 N N N 13.096 -8.621 22.122 -3.436 -2.342 0.915 CL28 NNT 28 98P HN22 HN22 H 0 0 N N N 16.140 -15.409 22.205 4.335 -1.495 -1.725 H DPN 29 98P HN2A HN2A H 0 0 N N N 16.560 -16.265 23.530 3.056 -2.235 -0.962 H2 DPN 30 98P H3 H3 H 0 1 N N N 18.447 -15.023 22.761 3.592 0.664 -1.043 HA DPN 31 98P H2 H2 H 0 1 N N N 17.922 -15.450 25.242 3.759 -1.390 1.207 HB2 DPN 32 98P H2A H2A H 0 1 N N N 17.332 -13.752 25.290 3.878 0.372 1.436 HB3 DPN 33 98P H5 H5 H 0 1 N N N 20.283 -15.640 23.864 5.810 1.601 0.629 HD1 DPN 34 98P H9 H9 H 0 1 N N N 18.887 -12.201 25.988 5.527 -2.620 0.092 HD2 DPN 35 98P H6 H6 H 0 1 N N N 22.605 -14.816 24.068 8.203 1.514 0.056 HE1 DPN 36 98P H8 H8 H 0 1 N N N 21.202 -11.378 26.184 7.918 -2.707 -0.489 HE2 DPN 37 98P H7 H7 H 0 1 N N N 23.069 -12.692 25.232 9.257 -0.640 -0.503 HZ DPN 38 98P H10 H10 H 0 1 N N N 18.030 -10.613 21.905 -0.335 1.170 1.578 HA PRO 39 98P H14 H14 H 0 1 N N N 18.799 -11.476 19.146 -0.212 3.326 -0.600 HB2 PRO 40 98P H14A H14A H 0 0 N N N 19.594 -10.283 20.205 -0.952 3.428 1.033 HB3 PRO 41 98P H15 H15 H 0 1 N N N 20.684 -12.761 19.662 1.561 4.400 0.630 HG2 PRO 42 98P H15A H15A H 0 0 N N N 20.990 -11.884 21.184 1.193 3.482 2.126 HG3 PRO 43 98P H16 H16 H 0 1 N N N 19.212 -14.267 20.679 2.713 2.615 -0.326 HD2 PRO 44 98P H16A H16A H 0 0 N N N 20.061 -13.793 22.166 2.891 2.069 1.365 HD3 PRO 45 98P H12 H12 H 0 1 N N N 14.605 -10.633 19.044 -2.734 -1.038 -1.388 H12 NNT 46 98P H12A H12A H 0 0 N N N 14.311 -9.171 20.036 -3.227 0.569 -1.972 H12A NNT 47 98P H17 H17 H 0 1 N N N 14.002 -12.896 19.995 -5.399 1.341 -1.564 H17 NNT 48 98P H18 H18 H 0 1 N N N 11.645 -14.877 22.011 -8.361 0.852 -1.579 H18 NNT 49 98P H18A H18A H 0 0 N N N 12.059 -14.679 20.275 -8.548 1.392 0.106 H18A NNT 50 98P H18B H18B H 0 0 N N N 13.356 -14.999 21.476 -7.437 2.253 -0.986 H18B NNT 51 98P H19 H19 H 0 1 N N N 11.136 -13.001 23.047 -7.991 -0.666 0.983 H19 NNT 52 98P H20 H20 H 0 1 N N N 11.397 -10.569 23.438 -6.202 -2.198 1.700 H20 NNT 53 98P HN24 HN24 H 0 0 N N N 16.250 -9.639 21.260 -2.589 0.778 0.771 HN24 NNT 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 98P C1 C2 SING N N 1 98P C1 C5 DOUB Y N 2 98P C1 C9 SING Y N 3 98P C2 C3 SING N N 4 98P C3 C4 SING N N 5 98P C3 N22 SING N N 6 98P C4 N23 SING N N 7 98P C4 O26 DOUB N N 8 98P C5 C6 SING Y N 9 98P C6 C7 DOUB Y N 10 98P C7 C8 SING Y N 11 98P C8 C9 DOUB Y N 12 98P C10 C11 SING N N 13 98P C10 C14 SING N N 14 98P C10 N23 SING N N 15 98P C11 N24 SING N N 16 98P C11 O27 DOUB N N 17 98P C12 C13 SING N N 18 98P C12 N24 SING N N 19 98P C13 C17 DOUB Y N 20 98P C13 C21 SING Y N 21 98P C14 C15 SING N N 22 98P C15 C16 SING N N 23 98P C16 N23 SING N N 24 98P C17 N25 SING Y N 25 98P C18 N25 SING N N 26 98P C19 C20 SING Y N 27 98P C19 N25 DOUB Y N 28 98P C20 C21 DOUB Y N 29 98P C21 CL28 SING N N 30 98P C2 H2 SING N N 31 98P C2 H2A SING N N 32 98P C3 H3 SING N N 33 98P C5 H5 SING N N 34 98P C6 H6 SING N N 35 98P C7 H7 SING N N 36 98P C8 H8 SING N N 37 98P C9 H9 SING N N 38 98P C10 H10 SING N N 39 98P C12 H12 SING N N 40 98P C12 H12A SING N N 41 98P C14 H14 SING N N 42 98P C14 H14A SING N N 43 98P C15 H15 SING N N 44 98P C15 H15A SING N N 45 98P C16 H16 SING N N 46 98P C16 H16A SING N N 47 98P C17 H17 SING N N 48 98P C18 H18 SING N N 49 98P C18 H18A SING N N 50 98P C18 H18B SING N N 51 98P C19 H19 SING N N 52 98P C20 H20 SING N N 53 98P N22 HN22 SING N N 54 98P N22 HN2A SING N N 55 98P N24 HN24 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 98P SMILES ACDLabs 12.01 "O=C(NCc1c(Cl)cc[n+](c1)C)C3N(C(=O)C(N)Cc2ccccc2)CCC3" 98P SMILES_CANONICAL CACTVS 3.370 "C[n+]1ccc(Cl)c(CNC(=O)[C@@H]2CCCN2C(=O)[C@H](N)Cc3ccccc3)c1" 98P SMILES CACTVS 3.370 "C[n+]1ccc(Cl)c(CNC(=O)[CH]2CCCN2C(=O)[CH](N)Cc3ccccc3)c1" 98P SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[n+]1ccc(c(c1)CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc3ccccc3)N)Cl" 98P SMILES "OpenEye OEToolkits" 1.7.0 "C[n+]1ccc(c(c1)CNC(=O)C2CCCN2C(=O)C(Cc3ccccc3)N)Cl" 98P InChI InChI 1.03 "InChI=1S/C21H25ClN4O2/c1-25-11-9-17(22)16(14-25)13-24-20(27)19-8-5-10-26(19)21(28)18(23)12-15-6-3-2-4-7-15/h2-4,6-7,9,11,14,18-19H,5,8,10,12-13,23H2,1H3/p+1/t18-,19+/m1/s1" 98P InChIKey InChI 1.03 FZBNWDIVSYUHIW-MOPGFXCFSA-O # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 98P "SYSTEMATIC NAME" ACDLabs 12.01 "D-phenylalanyl-N-[(4-chloro-1-methylpyridinium-3-yl)methyl]-L-prolinamide" 98P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]-N-[(4-chloro-1-methyl-pyridin-1-ium-3-yl)methyl]pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 98P "Create component" 2011-03-18 PDBJ 98P "Modify linking type" 2011-03-18 PDBJ 98P "Modify aromatic_flag" 2011-06-04 RCSB 98P "Modify descriptor" 2011-06-04 RCSB #