data_98U # _chem_comp.id 98U _chem_comp.name 3-O-acetyl-6-deoxy-alpha-L-galactopyranose _chem_comp.type L-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H14 O6" _chem_comp.mon_nstd_parent_comp_id FUC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-02-02 _chem_comp.pdbx_modified_date 2022-05-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 206.193 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 98U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7W1E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 98U O4 O1 O 0 1 N N N 95.902 39.478 73.393 0.945 1.896 -0.993 O4 98U 1 98U C4 C1 C 0 1 N N R 95.544 38.291 74.062 0.820 1.245 0.273 C4 98U 2 98U C3 C2 C 0 1 N N R 94.029 38.249 74.299 -0.324 0.228 0.214 C3 98U 3 98U C2 C3 C 0 1 N N S 93.368 38.372 72.950 0.018 -0.850 -0.820 C2 98U 4 98U O2 O2 O 0 1 N N N 91.968 38.409 73.149 -1.009 -1.843 -0.832 O2 98U 5 98U O3 O3 O 0 1 N N N 93.593 39.304 75.051 -1.552 0.899 -0.173 O3 98U 6 98U C7 C4 C 0 1 N N N 93.823 39.290 76.356 -2.701 0.387 0.295 C7 98U 7 98U C8 C5 C 0 1 N N N 93.287 40.399 77.193 -4.015 1.031 -0.064 C8 98U 8 98U O7 O4 O 0 1 N N N 94.445 38.265 76.934 -2.681 -0.591 1.005 O7 98U 9 98U C5 C6 C 0 1 N N S 95.876 37.107 73.192 2.124 0.515 0.604 C5 98U 10 98U C6 C7 C 0 1 N N N 97.370 37.068 72.908 3.282 1.515 0.606 C6 98U 11 98U O5 O5 O 0 1 N N N 95.183 37.154 71.937 2.367 -0.493 -0.379 O5 98U 12 98U C1 C8 C 0 1 N N R 93.781 37.207 72.068 1.354 -1.498 -0.447 C1 98U 13 98U HO4 H1 H 0 1 N N N 95.693 40.226 73.940 1.652 2.555 -1.027 HO4 98U 14 98U H4 H2 H 0 1 N N N 96.067 38.204 75.026 0.609 1.985 1.045 H4 98U 15 98U H3 H3 H 0 1 N N N 93.760 37.285 74.755 -0.454 -0.233 1.193 H3 98U 16 98U H2 H4 H 0 1 N N N 93.705 39.306 72.476 0.096 -0.395 -1.808 H2 98U 17 98U HO2 H5 H 0 1 N N N 91.746 39.148 73.703 -0.857 -2.558 -1.466 HO2 98U 18 98U H6 H6 H 0 1 N N N 93.499 40.195 78.253 -4.401 0.583 -0.980 H6 98U 19 98U H7 H7 H 0 1 N N N 93.766 41.345 76.899 -4.729 0.876 0.745 H7 98U 20 98U H8 H8 H 0 1 N N N 92.200 40.477 77.045 -3.866 2.100 -0.217 H8 98U 21 98U H5 H9 H 0 1 N N N 95.601 36.188 73.730 2.042 0.052 1.587 H5 98U 22 98U H61 H10 H 0 1 N N N 97.924 37.032 73.858 3.096 2.285 1.356 H61 98U 23 98U H62 H11 H 0 1 N N N 97.607 36.175 72.311 4.210 0.996 0.842 H62 98U 24 98U H63 H12 H 0 1 N N N 97.660 37.970 72.349 3.364 1.978 -0.377 H63 98U 25 98U H1 H13 H 0 1 N N N 93.323 37.348 71.078 1.623 -2.236 -1.203 H1 98U 26 98U O1 O6 O 0 1 N Y N 93.309 36.002 72.640 1.233 -2.140 0.824 O1 98U 27 98U HO1 H14 H 0 1 N Y N 92.364 36.041 72.727 2.043 -2.573 1.125 HO1 98U 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 98U O5 C1 SING N N 1 98U O5 C5 SING N N 2 98U C1 C2 SING N N 3 98U C6 C5 SING N N 4 98U C2 O2 SING N N 5 98U C2 C3 SING N N 6 98U C5 C4 SING N N 7 98U O4 C4 SING N N 8 98U C4 C3 SING N N 9 98U C3 O3 SING N N 10 98U O3 C7 SING N N 11 98U C7 O7 DOUB N N 12 98U C7 C8 SING N N 13 98U O4 HO4 SING N N 14 98U C4 H4 SING N N 15 98U C3 H3 SING N N 16 98U C2 H2 SING N N 17 98U O2 HO2 SING N N 18 98U C8 H6 SING N N 19 98U C8 H7 SING N N 20 98U C8 H8 SING N N 21 98U C5 H5 SING N N 22 98U C6 H61 SING N N 23 98U C6 H62 SING N N 24 98U C6 H63 SING N N 25 98U C1 H1 SING N N 26 98U C1 O1 SING N N 27 98U O1 HO1 SING N N 28 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 98U SMILES ACDLabs 12.01 "OC1C(OC(=O)C)C(O)C(OC1C)O" 98U InChI InChI 1.03 "InChI=1S/C8H14O6/c1-3-5(10)7(14-4(2)9)6(11)8(12)13-3/h3,5-8,10-12H,1-2H3/t3-,5+,6-,7+,8+/m0/s1" 98U InChIKey InChI 1.03 DSRWWNDXQIXWDI-RMQBOJNYSA-N 98U SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1O[C@@H](O)[C@@H](O)[C@H](OC(C)=O)[C@@H]1O" 98U SMILES CACTVS 3.385 "C[CH]1O[CH](O)[CH](O)[CH](OC(C)=O)[CH]1O" 98U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)OC(=O)C)O" 98U SMILES "OpenEye OEToolkits" 2.0.7 "CC1C(C(C(C(O1)O)O)OC(=O)C)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 98U "SYSTEMATIC NAME" ACDLabs 12.01 3-O-acetyl-6-deoxy-alpha-L-galactopyranose 98U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{S},3~{R},4~{R},5~{S},6~{R})-2-methyl-3,5,6-tris(oxidanyl)oxan-4-yl] ethanoate" # _pdbx_chem_comp_related.comp_id 98U _pdbx_chem_comp_related.related_comp_id FUC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 98U O4 FUC O4 "Carbohydrate core" 2 98U C4 FUC C4 "Carbohydrate core" 3 98U C3 FUC C3 "Carbohydrate core" 4 98U C2 FUC C2 "Carbohydrate core" 5 98U O2 FUC O2 "Carbohydrate core" 6 98U O3 FUC O3 "Carbohydrate core" 7 98U C5 FUC C5 "Carbohydrate core" 8 98U C6 FUC C6 "Carbohydrate core" 9 98U O5 FUC O5 "Carbohydrate core" 10 98U C1 FUC C1 "Carbohydrate core" 11 98U HO4 FUC HO4 "Carbohydrate core" 12 98U H4 FUC H4 "Carbohydrate core" 13 98U H3 FUC H3 "Carbohydrate core" 14 98U H2 FUC H2 "Carbohydrate core" 15 98U HO2 FUC HO2 "Carbohydrate core" 16 98U H5 FUC H5 "Carbohydrate core" 17 98U H61 FUC H61 "Carbohydrate core" 18 98U H62 FUC H62 "Carbohydrate core" 19 98U H63 FUC H63 "Carbohydrate core" 20 98U H1 FUC H1 "Carbohydrate core" 21 98U O1 FUC O1 "Carbohydrate core" 22 98U HO1 FUC HO1 "Carbohydrate core" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 98U "Create component" 2018-02-02 PDBJ 98U "Modify atom id" 2020-07-24 RCSB 98U "Modify model coordinates code" 2021-11-30 PDBJ 98U "Initial release" 2022-05-18 RCSB ##