data_99Y # _chem_comp.id 99Y _chem_comp.name 4-carboxy-D-phenylalanine _chem_comp.type "D-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H11 N O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-04-11 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 209.199 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 99Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5TYI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 99Y CA C02 C 0 1 N N R Y N N 24.992 -2.623 -11.865 -2.447 -0.042 -0.429 C02 99Y 1 99Y C03 C03 C 0 1 N N N N N N 24.204 -3.782 -12.422 -1.674 0.220 0.865 C03 99Y 2 99Y C04 C04 C 0 1 Y N N N N N 24.180 -5.055 -11.601 -0.194 0.176 0.584 C04 99Y 3 99Y C05 C05 C 0 1 Y N N N N N 23.357 -5.193 -10.490 0.473 1.333 0.221 C05 99Y 4 99Y C06 C06 C 0 1 Y N N N N N 23.350 -6.397 -9.798 1.827 1.300 -0.038 C06 99Y 5 99Y C07 C07 C 0 1 Y N N N N N 24.163 -7.448 -10.202 2.525 0.095 0.067 C07 99Y 6 99Y C08 C08 C 0 1 N N N N N N 24.168 -8.774 -9.465 3.976 0.052 -0.209 C08 99Y 7 99Y C11 C11 C 0 1 Y N N N N N 24.983 -7.300 -11.302 1.846 -1.069 0.433 C11 99Y 8 99Y C12 C12 C 0 1 Y N N N N N 24.986 -6.110 -12.006 0.492 -1.020 0.694 C12 99Y 9 99Y C C13 C 0 1 N N N Y N Y 25.649 -1.717 -12.876 -3.923 0.123 -0.175 C13 99Y 10 99Y N N01 N 0 1 N N N Y Y N 25.915 -3.018 -10.876 -2.180 -1.411 -0.890 N01 99Y 11 99Y O09 O09 O 0 1 N N N N N N 23.117 -9.174 -8.907 4.646 -1.113 -0.107 O09 99Y 12 99Y O10 O10 O 0 1 N N N N N N 25.197 -9.500 -9.455 4.564 1.065 -0.527 O10 99Y 13 99Y O O14 O 0 1 N N N Y N Y 25.516 -0.555 -12.556 -4.619 -0.850 -0.003 O14 99Y 14 99Y OXT O1 O 0 1 N Y N Y N Y 25.973 -2.032 -14.127 -4.465 1.350 -0.140 O1 99Y 15 99Y HA H1 H 0 1 N N N Y N N 24.249 -1.991 -11.355 -2.128 0.667 -1.193 H1 99Y 16 99Y H1 H2 H 0 1 N N N N N N 23.164 -3.447 -12.545 -1.941 1.203 1.254 H2 99Y 17 99Y H3 H3 H 0 1 N N N N N N 24.629 -4.030 -13.406 -1.927 -0.543 1.600 H3 99Y 18 99Y H4 H4 H 0 1 N N N N N N 22.731 -4.374 -10.169 -0.068 2.264 0.141 H4 99Y 19 99Y H5 H5 H 0 1 N N N N N N 22.707 -6.517 -8.939 2.347 2.203 -0.321 H5 99Y 20 99Y H6 H6 H 0 1 N N N N N N 25.622 -8.113 -11.613 2.380 -2.004 0.515 H6 99Y 21 99Y H7 H7 H 0 1 N N N N N N 25.618 -6.001 -12.875 -0.034 -1.918 0.982 H7 99Y 22 99Y H H8 H 0 1 N N N Y Y N 25.461 -3.617 -10.216 -2.467 -2.088 -0.199 H8 99Y 23 99Y H2 H9 H 0 1 N Y N Y Y N 26.673 -3.509 -11.305 -2.627 -1.589 -1.777 H9 99Y 24 99Y H11 H11 H 0 1 N N N N N N 23.265 -10.033 -8.530 5.594 -1.091 -0.297 H11 99Y 25 99Y HXT H12 H 0 1 N Y N Y N Y 26.063 -1.238 -14.641 -5.416 1.406 0.026 H12 99Y 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 99Y C O DOUB N N 1 99Y C CA SING N N 2 99Y C03 CA SING N N 3 99Y C03 C04 SING N N 4 99Y C12 C04 DOUB Y N 5 99Y C12 C11 SING Y N 6 99Y CA N SING N N 7 99Y C04 C05 SING Y N 8 99Y C11 C07 DOUB Y N 9 99Y C05 C06 DOUB Y N 10 99Y C07 C06 SING Y N 11 99Y C07 C08 SING N N 12 99Y C08 O10 DOUB N N 13 99Y C08 O09 SING N N 14 99Y C OXT SING N N 15 99Y CA HA SING N N 16 99Y C03 H1 SING N N 17 99Y C03 H3 SING N N 18 99Y C05 H4 SING N N 19 99Y C06 H5 SING N N 20 99Y C11 H6 SING N N 21 99Y C12 H7 SING N N 22 99Y N H SING N N 23 99Y N H2 SING N N 24 99Y O09 H11 SING N N 25 99Y OXT HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 99Y SMILES ACDLabs 12.01 "C(N)(Cc1ccc(C(=O)O)cc1)C(=O)O" 99Y InChI InChI 1.03 "InChI=1S/C10H11NO4/c11-8(10(14)15)5-6-1-3-7(4-2-6)9(12)13/h1-4,8H,5,11H2,(H,12,13)(H,14,15)/t8-/m1/s1" 99Y InChIKey InChI 1.03 YXDGRBPZVQPESQ-MRVPVSSYSA-N 99Y SMILES_CANONICAL CACTVS 3.385 "N[C@H](Cc1ccc(cc1)C(O)=O)C(O)=O" 99Y SMILES CACTVS 3.385 "N[CH](Cc1ccc(cc1)C(O)=O)C(O)=O" 99Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1C[C@H](C(=O)O)N)C(=O)O" 99Y SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1CC(C(=O)O)N)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 99Y "SYSTEMATIC NAME" ACDLabs 12.01 4-carboxy-D-phenylalanine 99Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "4-[(2~{R})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]benzoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 99Y "Create component" 2017-04-11 RCSB 99Y "Initial release" 2017-11-15 RCSB 99Y "Modify linking type" 2023-09-05 RCSB 99Y "Modify backbone" 2023-11-03 PDBE #