data_9D0 # _chem_comp.id 9D0 _chem_comp.name "N-({4-[(octylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H30 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-03-16 _chem_comp.pdbx_modified_date 2019-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.575 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9D0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ZHN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9D0 CAA C1 C 0 1 N N N 54.820 126.103 22.304 12.240 3.716 -0.010 CAA 9D0 1 9D0 CAJ C2 C 0 1 N N N 55.162 124.887 21.437 11.659 2.301 -0.004 CAJ 9D0 2 9D0 CAK C3 C 0 1 N N N 53.892 124.063 21.170 10.130 2.376 -0.007 CAK 9D0 3 9D0 CAL C4 C 0 1 N N N 54.021 123.291 19.842 9.550 0.961 -0.002 CAL 9D0 4 9D0 CAM C5 C 0 1 N N N 52.971 123.761 18.820 8.021 1.037 -0.005 CAM 9D0 5 9D0 CAN C6 C 0 1 N N N 52.401 122.556 18.061 7.441 -0.379 0.001 CAN 9D0 6 9D0 CAO C7 C 0 1 N N N 50.922 122.771 17.729 5.913 -0.303 -0.002 CAO 9D0 7 9D0 CAP C8 C 0 1 N N N 50.346 121.525 17.031 5.332 -1.718 0.003 CAP 9D0 8 9D0 NAT N1 N 0 1 N N N 48.876 121.443 17.170 3.865 -1.645 0.000 NAT 9D0 9 9D0 CAQ C9 C 0 1 N N N 48.490 120.587 18.316 3.271 -2.989 0.005 CAQ 9D0 10 9D0 CAY C10 C 0 1 Y N N 47.422 119.708 18.053 1.768 -2.874 0.002 CAY 9D0 11 9D0 CAE C11 C 0 1 Y N N 47.410 118.433 18.648 1.081 -2.827 -1.196 CAE 9D0 12 9D0 CAG C12 C 0 1 Y N N 46.358 117.540 18.416 -0.297 -2.721 -1.199 CAG 9D0 13 9D0 CAD C13 C 0 1 Y N N 46.352 120.088 17.234 1.076 -2.822 1.198 CAD 9D0 14 9D0 CAF C14 C 0 1 Y N N 45.288 119.206 17.014 -0.302 -2.717 1.195 CAF 9D0 15 9D0 CAZ C15 C 0 1 Y N N 45.286 117.934 17.601 -0.988 -2.662 -0.004 CAZ 9D0 16 9D0 CAR C16 C 0 1 N N N 44.230 117.064 17.363 -2.491 -2.548 -0.007 CAR 9D0 17 9D0 NAU N2 N 0 1 N N N 44.536 116.274 16.172 -2.873 -1.134 -0.005 NAU 9D0 18 9D0 CAX C17 C 0 1 N N N 44.476 114.943 16.168 -4.176 -0.788 -0.008 CAX 9D0 19 9D0 OAB O1 O 0 1 N N N 44.190 114.342 17.205 -5.034 -1.650 -0.011 OAB 9D0 20 9D0 CBA C18 C 0 1 Y N N 44.834 114.234 15.049 -4.559 0.631 -0.006 CBA 9D0 21 9D0 CBD C19 C 0 1 Y N N 45.194 114.644 13.767 -5.948 1.081 -0.003 CBD 9D0 22 9D0 CBB C20 C 0 1 N N N 45.253 115.862 13.140 -7.164 0.336 -0.005 CBB 9D0 23 9D0 OAC O2 O 0 1 N N N 45.011 116.950 13.694 -7.146 -0.883 -0.011 OAC 9D0 24 9D0 NAV N3 N 0 1 N N N 45.639 115.943 11.761 -8.333 1.007 -0.001 NAV 9D0 25 9D0 CAH C21 C 0 1 N N N 45.939 114.879 11.044 -8.343 2.363 0.006 CAH 9D0 26 9D0 NAS N4 N 0 1 N N N 45.880 113.647 11.676 -7.244 3.059 0.008 NAS 9D0 27 9D0 CBC C22 C 0 1 Y N N 45.512 113.567 12.970 -6.031 2.466 0.004 CBC 9D0 28 9D0 SAW S1 S 0 1 Y N N 45.337 112.206 13.786 -4.414 3.157 0.006 SAW 9D0 29 9D0 CAI C23 C 0 1 Y N N 44.886 112.899 15.223 -3.666 1.630 -0.002 CAI 9D0 30 9D0 H1 H1 H 0 1 N N N 55.732 126.688 22.492 11.901 4.251 0.877 H1 9D0 31 9D0 H2 H2 H 0 1 N N N 54.083 126.730 21.781 13.328 3.662 -0.008 H2 9D0 32 9D0 H3 H3 H 0 1 N N N 54.399 125.763 23.262 11.904 4.243 -0.903 H3 9D0 33 9D0 H4 H4 H 0 1 N N N 55.900 124.261 21.961 11.998 1.765 -0.891 H4 9D0 34 9D0 H5 H5 H 0 1 N N N 55.584 125.228 20.480 11.995 1.774 0.889 H5 9D0 35 9D0 H6 H6 H 0 1 N N N 53.026 124.739 21.113 9.792 2.912 0.880 H6 9D0 36 9D0 H7 H7 H 0 1 N N N 53.745 123.347 21.992 9.795 2.904 -0.900 H7 9D0 37 9D0 H8 H8 H 0 1 N N N 53.878 122.218 20.036 9.889 0.426 -0.889 H8 9D0 38 9D0 H9 H9 H 0 1 N N N 55.026 123.458 19.426 9.885 0.434 0.891 H9 9D0 39 9D0 H10 H10 H 0 1 N N N 53.442 124.452 18.105 7.683 1.572 0.882 H10 9D0 40 9D0 H11 H11 H 0 1 N N N 52.156 124.278 19.347 7.686 1.564 -0.898 H11 9D0 41 9D0 H12 H12 H 0 1 N N N 52.503 121.656 18.685 7.780 -0.914 -0.886 H12 9D0 42 9D0 H13 H13 H 0 1 N N N 52.964 122.420 17.126 7.777 -0.906 0.894 H13 9D0 43 9D0 H14 H14 H 0 1 N N N 50.822 123.640 17.062 5.574 0.233 0.885 H14 9D0 44 9D0 H15 H15 H 0 1 N N N 50.364 122.957 18.659 5.577 0.224 -0.895 H15 9D0 45 9D0 H16 H16 H 0 1 N N N 50.796 120.627 17.479 5.671 -2.253 -0.884 H16 9D0 46 9D0 H17 H17 H 0 1 N N N 50.600 121.568 15.962 5.668 -2.245 0.896 H17 9D0 47 9D0 H18 H18 H 0 1 N N N 48.511 122.363 17.313 3.528 -1.098 0.778 H18 9D0 48 9D0 H20 H20 H 0 1 N N N 49.365 119.987 18.607 3.595 -3.533 -0.882 H20 9D0 49 9D0 H21 H21 H 0 1 N N N 48.199 121.241 19.151 3.592 -3.525 0.898 H21 9D0 50 9D0 H22 H22 H 0 1 N N N 48.225 118.139 19.293 1.621 -2.872 -2.131 H22 9D0 51 9D0 H23 H23 H 0 1 N N N 46.371 116.556 18.861 -0.834 -2.684 -2.136 H23 9D0 52 9D0 H24 H24 H 0 1 N N N 46.348 121.064 16.771 1.613 -2.863 2.134 H24 9D0 53 9D0 H25 H25 H 0 1 N N N 44.462 119.508 16.387 -0.842 -2.676 2.129 H25 9D0 54 9D0 H26 H26 H 0 1 N N N 43.306 117.638 17.199 -2.890 -3.032 -0.899 H26 9D0 55 9D0 H27 H27 H 0 1 N N N 44.098 116.396 18.227 -2.894 -3.034 0.882 H27 9D0 56 9D0 H28 H28 H 0 1 N N N 44.799 116.748 15.332 -2.189 -0.447 -0.003 H28 9D0 57 9D0 H29 H29 H 0 1 N N N 46.220 114.964 10.005 -9.291 2.881 0.009 H29 9D0 58 9D0 H31 H31 H 0 1 N N N 44.671 112.371 16.140 -2.597 1.482 -0.000 H31 9D0 59 9D0 H19 H19 H 0 1 N N N 45.682 116.843 11.326 -9.171 0.517 -0.002 H19 9D0 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9D0 CAH NAS DOUB N N 1 9D0 CAH NAV SING N N 2 9D0 NAS CBC SING N N 3 9D0 NAV CBB SING N N 4 9D0 CBC CBD DOUB Y N 5 9D0 CBC SAW SING Y N 6 9D0 CBB OAC DOUB N N 7 9D0 CBB CBD SING N N 8 9D0 CBD CBA SING Y N 9 9D0 SAW CAI SING Y N 10 9D0 CBA CAI DOUB Y N 11 9D0 CBA CAX SING N N 12 9D0 CAX NAU SING N N 13 9D0 CAX OAB DOUB N N 14 9D0 NAU CAR SING N N 15 9D0 CAF CAD DOUB Y N 16 9D0 CAF CAZ SING Y N 17 9D0 CAP NAT SING N N 18 9D0 CAP CAO SING N N 19 9D0 NAT CAQ SING N N 20 9D0 CAD CAY SING Y N 21 9D0 CAR CAZ SING N N 22 9D0 CAZ CAG DOUB Y N 23 9D0 CAO CAN SING N N 24 9D0 CAY CAQ SING N N 25 9D0 CAY CAE DOUB Y N 26 9D0 CAN CAM SING N N 27 9D0 CAG CAE SING Y N 28 9D0 CAM CAL SING N N 29 9D0 CAL CAK SING N N 30 9D0 CAK CAJ SING N N 31 9D0 CAJ CAA SING N N 32 9D0 CAA H1 SING N N 33 9D0 CAA H2 SING N N 34 9D0 CAA H3 SING N N 35 9D0 CAJ H4 SING N N 36 9D0 CAJ H5 SING N N 37 9D0 CAK H6 SING N N 38 9D0 CAK H7 SING N N 39 9D0 CAL H8 SING N N 40 9D0 CAL H9 SING N N 41 9D0 CAM H10 SING N N 42 9D0 CAM H11 SING N N 43 9D0 CAN H12 SING N N 44 9D0 CAN H13 SING N N 45 9D0 CAO H14 SING N N 46 9D0 CAO H15 SING N N 47 9D0 CAP H16 SING N N 48 9D0 CAP H17 SING N N 49 9D0 NAT H18 SING N N 50 9D0 CAQ H20 SING N N 51 9D0 CAQ H21 SING N N 52 9D0 CAE H22 SING N N 53 9D0 CAG H23 SING N N 54 9D0 CAD H24 SING N N 55 9D0 CAF H25 SING N N 56 9D0 CAR H26 SING N N 57 9D0 CAR H27 SING N N 58 9D0 NAU H28 SING N N 59 9D0 CAH H29 SING N N 60 9D0 CAI H31 SING N N 61 9D0 NAV H19 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9D0 SMILES ACDLabs 12.01 "CCCCCCCCNCc1ccc(cc1)CNC(=O)c2csc3c2C(=O)NC=N3" 9D0 InChI InChI 1.03 "InChI=1S/C23H30N4O2S/c1-2-3-4-5-6-7-12-24-13-17-8-10-18(11-9-17)14-25-21(28)19-15-30-23-20(19)22(29)26-16-27-23/h8-11,15-16,24H,2-7,12-14H2,1H3,(H,25,28)(H,26,27,29)" 9D0 InChIKey InChI 1.03 SZWXXUKSELBLQK-UHFFFAOYSA-N 9D0 SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCNCc1ccc(CNC(=O)c2csc3N=CNC(=O)c23)cc1" 9D0 SMILES CACTVS 3.385 "CCCCCCCCNCc1ccc(CNC(=O)c2csc3N=CNC(=O)c23)cc1" 9D0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCCCCCNCc1ccc(cc1)CNC(=O)c2csc3c2C(=O)NC=N3" 9D0 SMILES "OpenEye OEToolkits" 2.0.6 "CCCCCCCCNCc1ccc(cc1)CNC(=O)c2csc3c2C(=O)NC=N3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9D0 "SYSTEMATIC NAME" ACDLabs 12.01 "N-({4-[(octylamino)methyl]phenyl}methyl)-4-oxo-3,4-dihydrothieno[2,3-d]pyrimidine-5-carboxamide" 9D0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[[4-[(octylamino)methyl]phenyl]methyl]-4-oxidanylidene-3~{H}-thieno[2,3-d]pyrimidine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9D0 "Create component" 2018-03-16 RCSB 9D0 "Initial release" 2019-03-06 RCSB ##