data_9DB
#
_chem_comp.id 9DB
_chem_comp.name "(2~{R})-2-azanyl-2-cyclohexyl-~{N}-[2-(1-methylpyrazol-4-yl)-9-oxidanylidene-3,10,11-triazatricyclo[6.4.1.0^{4,13}]trideca-1,4,6,8(13),11-pentaen-6-yl]ethanamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H25 N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-05-10
_chem_comp.pdbx_modified_date 2017-05-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 419.480
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9DB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5NXC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9DB C1 C1 C 0 1 Y N N 15.037 12.173 8.535 -5.056 2.362 0.451 C1 9DB 1
9DB C2 C2 C 0 1 Y N N 14.779 12.629 9.820 -4.699 1.174 -0.149 C2 9DB 2
9DB C3 C3 C 0 1 Y N N 13.776 11.747 10.305 -5.879 0.592 -0.661 C3 9DB 3
9DB C4 C4 C 0 1 Y N N 15.436 13.702 10.504 -3.336 0.615 -0.242 C4 9DB 4
9DB C5 C5 C 0 1 Y N N 16.857 15.296 10.768 -1.095 0.495 -0.577 C5 9DB 5
9DB C6 C6 C 0 1 Y N N 17.856 16.246 10.561 0.263 0.656 -0.835 C6 9DB 6
9DB C7 C7 C 0 1 Y N N 18.263 17.059 11.617 1.128 -0.423 -0.717 C7 9DB 7
9DB C8 C8 C 0 1 N N N 20.231 18.029 10.490 3.413 -0.913 -0.270 C8 9DB 8
9DB O1 O1 O 0 1 N N N 16.645 16.549 15.357 -0.160 -4.073 0.329 O1 9DB 9
9DB C18 C9 C 0 1 N N N 16.138 15.873 14.463 -1.055 -3.251 0.281 C18 9DB 10
9DB N5 N1 N 0 1 N N N 15.203 14.995 14.892 -2.299 -3.687 0.579 N5 9DB 11
9DB N6 N2 N 0 1 N N N 14.518 14.018 14.200 -3.527 -3.034 0.622 N6 9DB 12
9DB C19 C10 C 0 1 N N N 14.552 13.651 12.880 -3.875 -1.800 0.400 C19 9DB 13
9DB C20 C11 C 0 1 Y N N 15.304 14.094 11.870 -2.992 -0.692 0.002 C20 9DB 14
9DB N1 N3 N 0 1 Y N N 13.441 10.825 9.410 -6.878 1.385 -0.381 N1 9DB 15
9DB N N4 N 0 1 Y N N 14.251 11.107 8.337 -6.391 2.496 0.318 N 9DB 16
9DB C C12 C 0 1 N N N 14.242 10.204 7.193 -7.194 3.617 0.813 C 9DB 17
9DB C21 C13 C 0 1 Y N N 16.261 15.157 11.991 -1.542 -0.775 -0.214 C21 9DB 18
9DB N2 N5 N 0 1 Y N N 16.364 14.408 9.828 -2.201 1.321 -0.593 N2 9DB 19
9DB C17 C14 C 0 1 Y N N 16.645 15.997 13.058 -0.676 -1.873 -0.098 C17 9DB 20
9DB C16 C15 C 0 1 Y N N 17.617 16.974 12.845 0.674 -1.691 -0.353 C16 9DB 21
9DB N3 N6 N 0 1 N N N 19.332 17.965 11.490 2.490 -0.237 -0.982 N3 9DB 22
9DB O O2 O 0 1 N N N 20.636 17.043 9.885 3.064 -1.744 0.542 O 9DB 23
9DB C9 C16 C 0 1 N N R 20.902 19.380 10.285 4.879 -0.637 -0.483 C9 9DB 24
9DB N4 N7 N 0 1 N N N 21.161 19.650 8.860 5.668 -1.773 0.013 N4 9DB 25
9DB C10 C17 C 0 1 N N N 22.120 19.581 11.199 5.275 0.630 0.278 C10 9DB 26
9DB C15 C18 C 0 1 N N N 22.025 18.807 12.518 6.764 0.910 0.062 C15 9DB 27
9DB C14 C19 C 0 1 N N N 23.228 19.055 13.432 7.160 2.177 0.824 C14 9DB 28
9DB C13 C20 C 0 1 N N N 24.515 18.756 12.730 6.338 3.360 0.308 C13 9DB 29
9DB C12 C21 C 0 1 N N N 24.608 19.530 11.416 4.850 3.079 0.524 C12 9DB 30
9DB C11 C22 C 0 1 N N N 23.425 19.223 10.506 4.454 1.812 -0.237 C11 9DB 31
9DB H1 H1 H 0 1 N N N 15.737 12.596 7.830 -4.390 3.056 0.942 H1 9DB 32
9DB H2 H2 H 0 1 N N N 13.336 11.818 11.289 -5.944 -0.346 -1.191 H2 9DB 33
9DB H3 H3 H 0 1 N N N 18.312 16.351 9.588 0.647 1.625 -1.119 H3 9DB 34
9DB H4 H4 H 0 1 N N N 14.972 15.065 15.862 -2.344 -4.629 0.804 H4 9DB 35
9DB H5 H5 H 0 1 N N N 13.853 12.873 12.612 -4.924 -1.566 0.508 H5 9DB 36
9DB H6 H6 H 0 1 N N N 13.538 9.380 7.381 -7.256 4.387 0.044 H6 9DB 37
9DB H7 H7 H 0 1 N N N 13.929 10.755 6.294 -8.197 3.266 1.056 H7 9DB 38
9DB H8 H8 H 0 1 N N N 15.252 9.796 7.040 -6.728 4.031 1.707 H8 9DB 39
9DB H9 H9 H 0 1 N N N 16.634 14.312 8.870 -2.183 2.265 -0.816 H9 9DB 40
9DB H10 H10 H 0 1 N N N 17.868 17.666 13.635 1.364 -2.518 -0.272 H10 9DB 41
9DB H11 H11 H 0 1 N N N 19.435 18.636 12.224 2.769 0.378 -1.678 H11 9DB 42
9DB H12 H12 H 0 1 N N N 20.165 20.129 10.609 5.072 -0.497 -1.546 H12 9DB 43
9DB H13 H13 H 0 1 N N N 21.601 20.543 8.764 5.507 -1.923 0.997 H13 9DB 44
9DB H14 H14 H 0 1 N N N 21.762 18.941 8.490 5.472 -2.609 -0.518 H14 9DB 45
9DB H16 H16 H 0 1 N N N 22.164 20.651 11.451 5.083 0.489 1.342 H16 9DB 46
9DB H17 H17 H 0 1 N N N 21.111 19.119 13.045 7.350 0.067 0.430 H17 9DB 47
9DB H18 H18 H 0 1 N N N 21.969 17.732 12.293 6.957 1.050 -1.001 H18 9DB 48
9DB H19 H19 H 0 1 N N N 23.228 20.109 13.746 6.967 2.037 1.887 H19 9DB 49
9DB H20 H20 H 0 1 N N N 23.144 18.408 14.318 8.221 2.376 0.670 H20 9DB 50
9DB H21 H21 H 0 1 N N N 24.568 17.678 12.518 6.621 4.262 0.850 H21 9DB 51
9DB H22 H22 H 0 1 N N N 25.355 19.044 13.379 6.531 3.500 -0.756 H22 9DB 52
9DB H23 H23 H 0 1 N N N 25.538 19.250 10.900 4.657 2.939 1.587 H23 9DB 53
9DB H24 H24 H 0 1 N N N 24.621 20.608 11.635 4.264 3.922 0.156 H24 9DB 54
9DB H25 H25 H 0 1 N N N 23.424 18.151 10.262 4.647 1.953 -1.301 H25 9DB 55
9DB H26 H26 H 0 1 N N N 23.517 19.810 9.580 3.393 1.613 -0.083 H26 9DB 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9DB C N SING N N 1
9DB N C1 SING Y N 2
9DB N N1 SING Y N 3
9DB C1 C2 DOUB Y N 4
9DB N4 C9 SING N N 5
9DB N1 C3 DOUB Y N 6
9DB C2 C3 SING Y N 7
9DB C2 C4 SING N N 8
9DB N2 C4 SING Y N 9
9DB N2 C5 SING Y N 10
9DB O C8 DOUB N N 11
9DB C9 C8 SING N N 12
9DB C9 C10 SING N N 13
9DB C8 N3 SING N N 14
9DB C4 C20 DOUB Y N 15
9DB C11 C10 SING N N 16
9DB C11 C12 SING N N 17
9DB C6 C5 DOUB Y N 18
9DB C6 C7 SING Y N 19
9DB C5 C21 SING Y N 20
9DB C10 C15 SING N N 21
9DB C12 C13 SING N N 22
9DB N3 C7 SING N N 23
9DB C7 C16 DOUB Y N 24
9DB C20 C21 SING Y N 25
9DB C20 C19 SING N N 26
9DB C21 C17 DOUB Y N 27
9DB C15 C14 SING N N 28
9DB C13 C14 SING N N 29
9DB C16 C17 SING Y N 30
9DB C19 N6 DOUB N N 31
9DB C17 C18 SING N N 32
9DB N6 N5 SING N N 33
9DB C18 N5 SING N N 34
9DB C18 O1 DOUB N N 35
9DB C1 H1 SING N N 36
9DB C3 H2 SING N N 37
9DB C6 H3 SING N N 38
9DB N5 H4 SING N N 39
9DB C19 H5 SING N N 40
9DB C H6 SING N N 41
9DB C H7 SING N N 42
9DB C H8 SING N N 43
9DB N2 H9 SING N N 44
9DB C16 H10 SING N N 45
9DB N3 H11 SING N N 46
9DB C9 H12 SING N N 47
9DB N4 H13 SING N N 48
9DB N4 H14 SING N N 49
9DB C10 H16 SING N N 50
9DB C15 H17 SING N N 51
9DB C15 H18 SING N N 52
9DB C14 H19 SING N N 53
9DB C14 H20 SING N N 54
9DB C13 H21 SING N N 55
9DB C13 H22 SING N N 56
9DB C12 H23 SING N N 57
9DB C12 H24 SING N N 58
9DB C11 H25 SING N N 59
9DB C11 H26 SING N N 60
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9DB InChI InChI 1.03 "InChI=1S/C22H25N7O2/c1-29-11-13(9-25-29)20-16-10-24-28-21(30)15-7-14(8-17(27-20)18(15)16)26-22(31)19(23)12-5-3-2-4-6-12/h7-12,19,27H,2-6,23H2,1H3,(H,26,31)(H,28,30)/t19-/m1/s1"
9DB InChIKey InChI 1.03 NDEXUOWTGYUVGA-LJQANCHMSA-N
9DB SMILES_CANONICAL CACTVS 3.385 "Cn1cc(cn1)c2[nH]c3cc(NC(=O)[C@H](N)C4CCCCC4)cc5C(=O)NN=Cc2c35"
9DB SMILES CACTVS 3.385 "Cn1cc(cn1)c2[nH]c3cc(NC(=O)[CH](N)C4CCCCC4)cc5C(=O)NN=Cc2c35"
9DB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cn1cc(cn1)c2c3c4c(cc(cc4[nH]2)NC(=O)[C@@H](C5CCCCC5)N)C(=O)NN=C3"
9DB SMILES "OpenEye OEToolkits" 2.0.6 "Cn1cc(cn1)c2c3c4c(cc(cc4[nH]2)NC(=O)C(C5CCCCC5)N)C(=O)NN=C3"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9DB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-2-azanyl-2-cyclohexyl-~{N}-[2-(1-methylpyrazol-4-yl)-9-oxidanylidene-3,10,11-triazatricyclo[6.4.1.0^{4,13}]trideca-1,4,6,8(13),11-pentaen-6-yl]ethanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9DB "Create component" 2017-05-10 EBI
9DB "Initial release" 2017-05-24 RCSB
#