data_9DF # _chem_comp.id 9DF _chem_comp.name "(6S,9aS)-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-N-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H33 F3 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-13 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 518.571 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9DF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7WH5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9DF C10 C1 C 0 1 N N N -16.251 -13.900 31.188 -3.211 -1.358 2.729 C10 9DF 1 9DF C2 C2 C 0 1 N N N -15.819 -12.680 35.752 -0.164 -2.593 -1.464 C2 9DF 2 9DF C4 C3 C 0 1 N N N -15.655 -15.019 36.625 -2.498 -2.862 -2.124 C4 9DF 3 9DF C6 C4 C 0 1 N N N -17.230 -15.982 34.918 -3.952 -2.015 -0.313 C6 9DF 4 9DF C9 C5 C 0 1 N N S -17.066 -15.100 31.675 -2.892 0.014 2.132 C9 9DF 5 9DF N3 N1 N 0 1 N N N -15.607 -13.987 35.609 -1.433 -2.143 -1.413 N3 9DF 6 9DF O1 O1 O 0 1 N N N -15.529 -11.892 34.864 0.117 -3.542 -2.171 O1 9DF 7 9DF C5 C6 C 0 1 N N N -17.001 -15.693 36.388 -3.574 -3.240 -1.099 C5 9DF 8 9DF C8 C7 C 0 1 N N S -16.355 -16.073 32.646 -3.536 0.131 0.749 C8 9DF 9 9DF C11 C8 C 0 1 N N N -16.618 -13.528 29.769 -2.466 -1.523 4.055 C11 9DF 10 9DF C17 C9 C 0 1 N N S -15.331 -14.553 34.303 -1.752 -0.939 -0.650 C17 9DF 11 9DF C18 C10 C 0 1 N N N -14.047 -15.380 34.350 -1.661 0.285 -1.566 C18 9DF 12 9DF C20 C11 C 0 1 N N N -12.610 -16.690 32.841 -1.813 2.776 -1.398 C20 9DF 13 9DF C21 C12 C 0 1 Y N N -11.484 -15.684 32.725 -0.601 3.236 -0.630 C21 9DF 14 9DF C22 C13 C 0 1 Y N N -11.204 -15.052 31.514 0.686 2.859 -1.049 C22 9DF 15 9DF C23 C14 C 0 1 Y N N -11.980 -15.317 30.391 0.877 2.052 -2.184 C23 9DF 16 9DF C24 C15 C 0 1 Y N N -11.704 -14.674 29.189 2.139 1.707 -2.560 C24 9DF 17 9DF C25 C16 C 0 1 Y N N -10.653 -13.766 29.107 3.247 2.142 -1.837 C25 9DF 18 9DF C26 C17 C 0 1 Y N N -9.874 -13.495 30.229 3.101 2.924 -0.733 C26 9DF 19 9DF C27 C18 C 0 1 Y N N -10.153 -14.138 31.430 1.814 3.301 -0.314 C27 9DF 20 9DF C28 C19 C 0 1 Y N N -9.375 -13.867 32.550 1.623 4.109 0.821 C28 9DF 21 9DF C29 C20 C 0 1 Y N N -9.643 -14.508 33.755 0.362 4.454 1.197 C29 9DF 22 9DF C30 C21 C 0 1 Y N N -10.689 -15.421 33.838 -0.747 4.023 0.471 C30 9DF 23 9DF C31 C22 C 0 1 N N N -14.940 -16.391 32.234 -3.099 1.413 0.096 C31 9DF 24 9DF C35 C23 C 0 1 N N N -16.661 -10.883 37.192 2.149 -2.548 -0.700 C35 9DF 25 9DF C36 C24 C 0 1 N N N -15.397 -10.093 37.425 3.035 -1.681 0.197 C36 9DF 26 9DF C37 C25 C 0 1 N N N -15.555 -8.679 36.926 4.450 -2.263 0.232 C37 9DF 27 9DF C38 C26 C 0 1 N N N -14.729 -7.766 37.803 5.336 -1.396 1.129 C38 9DF 28 9DF C46 C27 C 0 1 N N N -18.419 -14.611 32.189 -3.446 1.109 3.046 C46 9DF 29 9DF F40 F1 F 0 1 N N N -14.062 -8.477 38.696 6.629 -1.928 1.161 F40 9DF 30 9DF F41 F2 F 0 1 N N N -13.871 -7.100 37.053 5.380 -0.093 0.621 F41 9DF 31 9DF F42 F3 F 0 1 N N N -15.529 -6.907 38.412 4.809 -1.374 2.424 F42 9DF 32 9DF N7 N2 N 0 1 N N N -16.356 -15.537 34.001 -3.105 -1.001 -0.093 N7 9DF 33 9DF N19 N3 N 0 1 N N N -13.936 -16.131 33.091 -2.228 1.458 -0.913 N19 9DF 34 9DF N34 N4 N 0 1 N N N -16.368 -12.273 36.892 0.795 -1.991 -0.733 N34 9DF 35 9DF O32 O2 O 0 1 N N N -14.740 -16.883 31.134 -3.562 2.457 0.507 O32 9DF 36 9DF O33 O3 O 0 1 N N N -18.209 -16.636 34.601 -5.074 -1.943 0.143 O33 9DF 37 9DF H1 H1 H 0 1 N N N -15.181 -14.153 31.227 -4.284 -1.439 2.902 H1 9DF 38 9DF H2 H2 H 0 1 N N N -16.449 -13.041 31.846 -2.895 -2.138 2.036 H2 9DF 39 9DF H3 H3 H 0 1 N N N -14.829 -15.735 36.497 -2.928 -2.220 -2.891 H3 9DF 40 9DF H4 H4 H 0 1 N N N -15.607 -14.581 37.633 -2.092 -3.764 -2.582 H4 9DF 41 9DF H5 H5 H 0 1 N N N -17.287 -15.693 30.775 -1.812 0.129 2.041 H5 9DF 42 9DF H6 H6 H 0 1 N N N -17.801 -15.030 36.750 -4.452 -3.626 -1.617 H6 9DF 43 9DF H7 H7 H 0 1 N N N -17.029 -16.640 36.946 -3.184 -4.001 -0.423 H7 9DF 44 9DF H8 H8 H 0 1 N N N -16.925 -17.014 32.643 -4.621 0.120 0.849 H8 9DF 45 9DF H9 H9 H 0 1 N N N -16.017 -12.664 29.449 -2.693 -2.500 4.481 H9 9DF 46 9DF H10 H10 H 0 1 N N N -16.419 -14.381 29.103 -1.393 -1.442 3.882 H10 9DF 47 9DF H11 H11 H 0 1 N N N -17.686 -13.269 29.723 -2.782 -0.743 4.748 H11 9DF 48 9DF H12 H12 H 0 1 N N N -15.266 -13.778 33.525 -1.040 -0.831 0.168 H12 9DF 49 9DF H13 H13 H 0 1 N N N -14.086 -16.079 35.198 -0.616 0.478 -1.805 H13 9DF 50 9DF H14 H14 H 0 1 N N N -13.179 -14.714 34.463 -2.210 0.087 -2.486 H14 9DF 51 9DF H15 H15 H 0 1 N N N -12.654 -17.257 31.900 -2.626 3.488 -1.255 H15 9DF 52 9DF H16 H16 H 0 1 N N N -12.369 -17.372 33.669 -1.569 2.712 -2.459 H16 9DF 53 9DF H17 H17 H 0 1 N N N -12.796 -16.021 30.452 0.027 1.707 -2.754 H17 9DF 54 9DF H18 H18 H 0 1 N N N -12.307 -14.880 28.317 2.283 1.086 -3.433 H18 9DF 55 9DF H19 H19 H 0 1 N N N -10.441 -13.270 28.171 4.238 1.854 -2.157 H19 9DF 56 9DF H20 H20 H 0 1 N N N -9.058 -12.790 30.167 3.970 3.254 -0.182 H20 9DF 57 9DF H21 H21 H 0 1 N N N -8.562 -13.159 32.484 2.473 4.453 1.391 H21 9DF 58 9DF H22 H22 H 0 1 N N N -9.039 -14.297 34.625 0.218 5.074 2.069 H22 9DF 59 9DF H23 H23 H 0 1 N N N -10.886 -15.929 34.771 -1.737 4.315 0.788 H23 9DF 60 9DF H24 H24 H 0 1 N N N -17.208 -10.442 36.346 2.560 -2.565 -1.709 H24 9DF 61 9DF H25 H25 H 0 1 N N N -17.285 -10.836 38.097 2.115 -3.563 -0.304 H25 9DF 62 9DF H26 H26 H 0 1 N N N -14.566 -10.575 36.889 3.070 -0.666 -0.198 H26 9DF 63 9DF H27 H27 H 0 1 N N N -15.176 -10.074 38.502 2.625 -1.664 1.207 H27 9DF 64 9DF H28 H28 H 0 1 N N N -15.204 -8.611 35.886 4.416 -3.278 0.627 H28 9DF 65 9DF H29 H29 H 0 1 N N N -16.613 -8.384 36.976 4.861 -2.280 -0.777 H29 9DF 66 9DF H30 H30 H 0 1 N N N -19.010 -15.469 32.541 -4.533 1.037 3.081 H30 9DF 67 9DF H31 H31 H 0 1 N N N -18.263 -13.908 33.020 -3.041 0.983 4.050 H31 9DF 68 9DF H32 H32 H 0 1 N N N -18.958 -14.103 31.376 -3.159 2.086 2.658 H32 9DF 69 9DF H33 H33 H 0 1 N N N -16.592 -12.962 37.581 0.588 -1.188 -0.228 H33 9DF 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9DF C25 C24 DOUB Y N 1 9DF C25 C26 SING Y N 2 9DF C24 C23 SING Y N 3 9DF C11 C10 SING N N 4 9DF C26 C27 DOUB Y N 5 9DF C23 C22 DOUB Y N 6 9DF O32 C31 DOUB N N 7 9DF C10 C9 SING N N 8 9DF C27 C22 SING Y N 9 9DF C27 C28 SING Y N 10 9DF C22 C21 SING Y N 11 9DF C9 C46 SING N N 12 9DF C9 C8 SING N N 13 9DF C31 C8 SING N N 14 9DF C31 N19 SING N N 15 9DF C28 C29 DOUB Y N 16 9DF C8 N7 SING N N 17 9DF C21 C20 SING N N 18 9DF C21 C30 DOUB Y N 19 9DF C20 N19 SING N N 20 9DF N19 C18 SING N N 21 9DF C29 C30 SING Y N 22 9DF N7 C17 SING N N 23 9DF N7 C6 SING N N 24 9DF C17 C18 SING N N 25 9DF C17 N3 SING N N 26 9DF O33 C6 DOUB N N 27 9DF O1 C2 DOUB N N 28 9DF C6 C5 SING N N 29 9DF N3 C2 SING N N 30 9DF N3 C4 SING N N 31 9DF C2 N34 SING N N 32 9DF C5 C4 SING N N 33 9DF N34 C35 SING N N 34 9DF C37 C36 SING N N 35 9DF C37 C38 SING N N 36 9DF F41 C38 SING N N 37 9DF C35 C36 SING N N 38 9DF C38 F42 SING N N 39 9DF C38 F40 SING N N 40 9DF C10 H1 SING N N 41 9DF C10 H2 SING N N 42 9DF C4 H3 SING N N 43 9DF C4 H4 SING N N 44 9DF C9 H5 SING N N 45 9DF C5 H6 SING N N 46 9DF C5 H7 SING N N 47 9DF C8 H8 SING N N 48 9DF C11 H9 SING N N 49 9DF C11 H10 SING N N 50 9DF C11 H11 SING N N 51 9DF C17 H12 SING N N 52 9DF C18 H13 SING N N 53 9DF C18 H14 SING N N 54 9DF C20 H15 SING N N 55 9DF C20 H16 SING N N 56 9DF C23 H17 SING N N 57 9DF C24 H18 SING N N 58 9DF C25 H19 SING N N 59 9DF C26 H20 SING N N 60 9DF C28 H21 SING N N 61 9DF C29 H22 SING N N 62 9DF C30 H23 SING N N 63 9DF C35 H24 SING N N 64 9DF C35 H25 SING N N 65 9DF C36 H26 SING N N 66 9DF C36 H27 SING N N 67 9DF C37 H28 SING N N 68 9DF C37 H29 SING N N 69 9DF C46 H30 SING N N 70 9DF C46 H31 SING N N 71 9DF C46 H32 SING N N 72 9DF N34 H33 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9DF InChI InChI 1.03 "InChI=1S/C27H33F3N4O3/c1-3-18(2)24-25(36)32(16-20-10-6-9-19-8-4-5-11-21(19)20)17-22-33(15-12-23(35)34(22)24)26(37)31-14-7-13-27(28,29)30/h4-6,8-11,18,22,24H,3,7,12-17H2,1-2H3,(H,31,37)/t18-,22+,24-/m0/s1" 9DF InChIKey InChI 1.03 KQOUYKFBWWUWOZ-ANJVHQHFSA-N 9DF SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@@H]1N2[C@H](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCCCC(F)(F)F" 9DF SMILES CACTVS 3.385 "CC[CH](C)[CH]1N2[CH](CN(Cc3cccc4ccccc34)C1=O)N(CCC2=O)C(=O)NCCCC(F)(F)F" 9DF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@H]1C(=O)N(C[C@H]2N1C(=O)CCN2C(=O)NCCCC(F)(F)F)Cc3cccc4c3cccc4" 9DF SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C1C(=O)N(CC2N1C(=O)CCN2C(=O)NCCCC(F)(F)F)Cc3cccc4c3cccc4" # _pdbx_chem_comp_identifier.comp_id 9DF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{S},9~{a}~{S})-6-[(2~{S})-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-~{N}-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9~{a}-tetrahydro-2~{H}-pyrazino[1,2-a]pyrimidine-1-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9DF "Create component" 2022-01-13 PDBJ 9DF "Initial release" 2022-11-16 RCSB #