data_9FB # _chem_comp.id 9FB _chem_comp.name "(1~{S},2~{R})-2-azanylcyclopentane-1-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-05-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 129.157 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9FB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5O0G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9FB C C64 C 0 1 N N N Y N Y 7.002 23.517 -23.052 1.353 -0.358 -0.001 C64 9FB 1 9FB O O16 O 0 1 N N N Y N Y 6.043 22.885 -23.461 1.446 -0.713 1.150 O16 9FB 2 9FB C63 C63 C 0 1 N N S Y N N 8.278 23.488 -23.867 0.011 -0.370 -0.687 C63 9FB 3 9FB C66 C66 C 0 1 N N N N N N 9.676 23.130 -23.323 -0.891 -1.457 -0.066 C66 9FB 4 9FB C62 C62 C 0 1 N N N N N N 10.471 22.872 -24.602 -2.305 -0.825 -0.067 C62 9FB 5 9FB CA C65 C 0 1 N N R Y N N 8.144 23.168 -25.343 -0.706 0.974 -0.465 C65 9FB 6 9FB C61 C61 C 0 1 N N N N N N 9.593 23.239 -25.811 -2.017 0.656 0.282 C61 9FB 7 9FB N N13 N 0 1 N N N Y Y N 7.493 21.851 -25.473 0.135 1.865 0.346 N13 9FB 8 9FB OXT O1 O 0 1 N Y N Y N Y 7.011 24.240 -21.930 2.443 0.051 -0.668 O1 9FB 9 9FB H1 H1 H 0 1 N N N Y N N 8.426 24.574 -23.959 0.138 -0.555 -1.753 H1 9FB 10 9FB H6 H2 H 0 1 N N N N N N 9.638 22.231 -22.690 -0.876 -2.360 -0.677 H2 9FB 11 9FB H3 H3 H 0 1 N N N N N N 10.105 23.965 -22.749 -0.572 -1.681 0.952 H3 9FB 12 9FB H4 H4 H 0 1 N N N N N N 10.750 21.809 -24.656 -2.763 -0.907 -1.053 H4 9FB 13 9FB H5 H5 H 0 1 N N N N N N 11.381 23.491 -24.604 -2.936 -1.288 0.691 H5 9FB 14 9FB HA H6 H 0 1 N N N Y N N 7.549 23.946 -25.845 -0.927 1.442 -1.425 H6 9FB 15 9FB H7 H7 H 0 1 N N N N N N 9.761 22.526 -26.631 -2.824 1.296 -0.075 H7 9FB 16 9FB H8 H8 H 0 1 N N N N N N 9.830 24.256 -26.156 -1.882 0.775 1.357 H8 9FB 17 9FB H H9 H 0 1 N N N Y Y N 6.552 21.910 -25.141 -0.271 2.786 0.409 H9 9FB 18 9FB H2 H10 H 0 1 N Y N Y Y N 7.491 21.574 -26.434 0.293 1.475 1.264 H10 9FB 19 9FB HXT H12 H 0 1 N Y N Y N Y 6.161 24.183 -21.509 3.281 0.044 -0.186 H12 9FB 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9FB C61 CA SING N N 1 9FB C61 C62 SING N N 2 9FB N CA SING N N 3 9FB CA C63 SING N N 4 9FB C62 C66 SING N N 5 9FB C63 C66 SING N N 6 9FB C63 C SING N N 7 9FB O C DOUB N N 8 9FB C OXT SING N N 9 9FB C63 H1 SING N N 10 9FB C66 H6 SING N N 11 9FB C66 H3 SING N N 12 9FB C62 H4 SING N N 13 9FB C62 H5 SING N N 14 9FB CA HA SING N N 15 9FB C61 H7 SING N N 16 9FB C61 H8 SING N N 17 9FB N H SING N N 18 9FB N H2 SING N N 19 9FB OXT HXT SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9FB InChI InChI 1.03 "InChI=1S/C6H11NO2/c7-5-3-1-2-4(5)6(8)9/h4-5H,1-3,7H2,(H,8,9)/t4-,5+/m0/s1" 9FB InChIKey InChI 1.03 JWYOAMOZLZXDER-CRCLSJGQSA-N 9FB SMILES_CANONICAL CACTVS 3.385 "N[C@@H]1CCC[C@@H]1C(O)=O" 9FB SMILES CACTVS 3.385 "N[CH]1CCC[CH]1C(O)=O" 9FB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1C[C@@H]([C@@H](C1)N)C(=O)O" 9FB SMILES "OpenEye OEToolkits" 2.0.6 "C1CC(C(C1)N)C(=O)O" # _pdbx_chem_comp_identifier.comp_id 9FB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "(1~{S},2~{R})-2-azanylcyclopentane-1-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9FB "Create component" 2017-05-16 RCSB 9FB "Initial release" 2020-10-28 RCSB 9FB "Modify backbone" 2023-11-03 PDBE 9FB "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 9FB _pdbx_chem_comp_pcm.modified_residue_id DPR _pdbx_chem_comp_pcm.type "Beta-amino acid" _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #