data_9FI # _chem_comp.id 9FI _chem_comp.name "~{N}-[(2~{R})-1-[[(1~{R},3~{S})-3-(aminomethyl)cyclohexyl]methylamino]-3-(1~{H}-indol-3-yl)-1-oxidanylidene-propan-2-yl]spiro[indene-1,4'-piperidine]-1'-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H41 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-14 _chem_comp.pdbx_modified_date 2022-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 539.711 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9FI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7WIG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9FI C1 C1 C 0 1 N N N 91.328 135.854 118.977 -5.120 -1.254 0.377 C1 9FI 1 9FI O2 O1 O 0 1 N N N 93.442 129.023 116.891 1.809 -2.230 0.298 O2 9FI 2 9FI C3 C2 C 0 1 N N S 91.281 124.969 117.032 8.307 -1.566 0.117 C3 9FI 3 9FI C4 C3 C 0 1 N N N 91.244 126.420 117.179 6.922 -2.212 0.186 C4 9FI 4 9FI C5 C4 C 0 1 N N N 91.329 135.192 117.582 -4.805 0.173 0.822 C5 9FI 5 9FI C6 C5 C 0 1 N N N 91.054 134.806 120.078 -3.937 -1.846 -0.385 C6 9FI 6 9FI C8 C6 C 0 1 N N N 92.459 124.500 117.716 8.451 -0.807 -1.204 C8 9FI 7 9FI C9 C7 C 0 1 N N N 92.460 124.960 119.127 7.377 0.279 -1.288 C9 9FI 8 9FI C10 C8 C 0 1 Y N N 90.370 136.961 119.066 -6.355 -1.268 -0.488 C10 9FI 9 9FI C13 C9 C 0 1 N N N 91.250 128.432 118.383 4.463 -1.771 0.171 C13 9FI 10 9FI C14 C10 C 0 1 N N N 92.548 136.598 119.244 -5.450 -2.111 1.574 C14 9FI 11 9FI C15 C11 C 0 1 N N N 91.395 124.636 115.562 9.381 -2.652 0.201 C15 9FI 12 9FI C16 C12 C 0 1 Y N N 90.988 138.166 119.314 -7.287 -2.068 0.178 C16 9FI 13 9FI C17 C13 C 0 1 N N N 92.416 137.916 119.428 -6.686 -2.559 1.432 C17 9FI 14 9FI C18 C14 C 0 1 Y N N 89.034 137.058 118.895 -6.671 -0.683 -1.691 C18 9FI 15 9FI C19 C15 C 0 1 N N N 93.400 131.932 119.115 -1.281 0.073 0.919 C19 9FI 16 9FI C20 C16 C 0 1 N N R 94.809 130.063 118.547 1.079 0.014 0.316 C20 9FI 17 9FI C22 C17 C 0 1 N N N 93.542 129.315 118.052 2.134 -1.062 0.275 C22 9FI 18 9FI C23 C18 C 0 1 Y N N 88.332 138.218 118.997 -7.921 -0.887 -2.252 C23 9FI 19 9FI C24 C19 C 0 1 N N N 95.878 129.715 117.619 1.179 0.874 -0.946 C24 9FI 20 9FI C25 C20 C 0 1 Y N N 88.997 139.394 119.238 -8.853 -1.677 -1.603 C25 9FI 21 9FI C26 C21 C 0 1 Y N N 95.942 128.321 117.607 0.208 2.022 -0.849 C26 9FI 22 9FI C27 C22 C 0 1 Y N N 96.308 127.590 116.497 0.445 3.311 -0.193 C27 9FI 23 9FI C28 C23 C 0 1 Y N N 95.616 127.418 118.545 -1.036 2.060 -1.351 C28 9FI 24 9FI C29 C24 C 0 1 Y N N 96.241 126.267 116.794 -0.738 4.054 -0.359 C29 9FI 25 9FI C11 C25 C 0 1 N N N 92.218 133.947 117.528 -3.583 0.159 1.746 C11 9FI 26 9FI C12 C26 C 0 1 N N N 91.959 133.580 119.945 -2.707 -1.877 0.529 C12 9FI 27 9FI C2 C27 C 0 1 N N R 91.201 126.971 118.512 5.848 -1.125 0.102 C2 9FI 28 9FI C21 C28 C 0 1 Y N N 90.372 139.375 119.414 -8.545 -2.268 -0.395 C21 9FI 29 9FI C30 C29 C 0 1 Y N N 96.688 128.016 115.316 1.526 3.866 0.492 C30 9FI 30 9FI C31 C30 C 0 1 Y N N 96.573 125.373 115.830 -0.814 5.340 0.167 C31 9FI 31 9FI C32 C31 C 0 1 Y N N 97.029 127.143 114.362 1.430 5.131 1.000 C32 9FI 32 9FI C33 C32 C 0 1 Y N N 96.969 125.811 114.629 0.265 5.869 0.840 C33 9FI 33 9FI C7 C33 C 0 1 N N N 92.424 126.452 119.164 5.991 -0.367 -1.219 C7 9FI 34 9FI N1 N1 N 0 1 N N N 92.559 133.130 118.826 -2.479 -0.526 1.060 N1 9FI 35 9FI N2 N2 N 0 1 N N N 92.437 129.066 118.813 3.438 -0.726 0.211 N2 9FI 36 9FI N3 N3 N 0 1 N N N 94.164 131.185 118.222 -0.247 -0.605 0.382 N3 9FI 37 9FI N4 N4 N 0 1 N N N 92.344 123.625 115.244 10.709 -2.025 0.255 N4 9FI 38 9FI N5 N5 N 0 1 Y N N 95.811 126.127 118.079 -1.618 3.266 -1.066 N5 9FI 39 9FI O1 O2 O 0 1 N N N 93.484 131.507 120.262 -1.132 1.226 1.276 O1 9FI 40 9FI H1 H1 H 0 1 N N N 90.373 124.512 117.452 8.427 -0.872 0.949 H1 9FI 41 9FI H2 H2 H 0 1 N N N 92.144 126.820 116.690 6.803 -2.906 -0.646 H2 9FI 42 9FI H3 H3 H 0 1 N N N 90.349 126.778 116.649 6.820 -2.752 1.127 H3 9FI 43 9FI H4 H4 H 0 1 N N N 91.697 135.921 116.845 -4.593 0.788 -0.052 H4 9FI 44 9FI H5 H5 H 0 1 N N N 90.299 134.902 117.328 -5.661 0.585 1.357 H5 9FI 45 9FI H6 H6 H 0 1 N N N 91.228 135.270 121.060 -4.179 -2.861 -0.702 H6 9FI 46 9FI H7 H7 H 0 1 N N N 90.005 134.482 120.006 -3.724 -1.233 -1.260 H7 9FI 47 9FI H8 H8 H 0 1 N N N 92.476 123.400 117.694 9.438 -0.347 -1.254 H8 9FI 48 9FI H9 H9 H 0 1 N N N 93.352 124.891 117.207 8.332 -1.501 -2.036 H9 9FI 49 9FI H10 H10 H 0 1 N N N 91.576 124.559 119.644 7.496 0.973 -0.456 H10 9FI 50 9FI H11 H11 H 0 1 N N N 93.371 124.603 119.629 7.479 0.819 -2.229 H11 9FI 51 9FI H12 H12 H 0 1 N N N 91.106 128.678 117.321 4.309 -2.397 -0.708 H12 9FI 52 9FI H13 H13 H 0 1 N N N 90.418 128.847 118.971 4.392 -2.384 1.070 H13 9FI 53 9FI H14 H14 H 0 1 N N N 93.511 136.112 119.291 -4.791 -2.323 2.402 H14 9FI 54 9FI H15 H15 H 0 1 N N N 91.681 125.553 115.026 9.225 -3.249 1.099 H15 9FI 55 9FI H16 H16 H 0 1 N N N 90.408 124.299 115.211 9.318 -3.294 -0.678 H16 9FI 56 9FI H17 H17 H 0 1 N N N 93.198 138.636 119.619 -7.189 -3.200 2.141 H17 9FI 57 9FI H18 H18 H 0 1 N N N 88.488 136.156 118.662 -5.945 -0.066 -2.199 H18 9FI 58 9FI H19 H19 H 0 1 N N N 95.035 129.891 119.610 1.233 0.640 1.195 H19 9FI 59 9FI H20 H20 H 0 1 N N N 87.257 138.214 118.889 -8.169 -0.428 -3.198 H20 9FI 60 9FI H21 H21 H 0 1 N N N 96.834 130.138 117.962 2.193 1.263 -1.042 H21 9FI 61 9FI H22 H22 H 0 1 N N N 95.649 130.095 116.613 0.938 0.267 -1.819 H22 9FI 62 9FI H23 H23 H 0 1 N N N 88.454 140.326 119.290 -9.826 -1.832 -2.044 H23 9FI 63 9FI H24 H24 H 0 1 N N N 95.251 127.664 119.531 -1.509 1.259 -1.900 H24 9FI 64 9FI H25 H25 H 0 1 N N N 91.728 133.244 116.838 -3.289 1.183 1.979 H25 9FI 65 9FI H26 H26 H 0 1 N N N 93.179 134.269 117.102 -3.826 -0.372 2.667 H26 9FI 66 9FI H27 H27 H 0 1 N N N 91.346 132.737 120.296 -2.882 -2.569 1.353 H27 9FI 67 9FI H28 H28 H 0 1 N N N 92.781 133.757 120.655 -1.836 -2.200 -0.041 H28 9FI 68 9FI H29 H29 H 0 1 N N N 90.299 126.650 119.053 5.967 -0.431 0.934 H29 9FI 69 9FI H30 H30 H 0 1 N N N 90.928 140.277 119.621 -9.276 -2.884 0.107 H30 9FI 70 9FI H31 H31 H 0 1 N N N 96.726 129.076 115.113 2.436 3.298 0.621 H31 9FI 71 9FI H32 H32 H 0 1 N N N 96.518 124.313 116.030 -1.716 5.922 0.047 H32 9FI 72 9FI H33 H33 H 0 1 N N N 97.348 127.492 113.391 2.267 5.561 1.530 H33 9FI 73 9FI H34 H34 H 0 1 N N N 97.244 125.100 113.864 0.205 6.867 1.247 H34 9FI 74 9FI H35 H35 H 0 1 N N N 93.306 126.846 118.638 5.226 0.407 -1.279 H35 9FI 75 9FI H36 H36 H 0 1 N N N 92.442 126.786 120.212 5.872 -1.061 -2.051 H36 9FI 76 9FI H37 H37 H 0 1 N N N 92.471 129.361 119.768 3.697 0.209 0.192 H37 9FI 77 9FI H38 H38 H 0 1 N N N 94.234 131.510 117.279 -0.381 -1.502 0.039 H38 9FI 78 9FI H39 H39 H 0 1 N N N 92.351 123.472 114.256 10.771 -1.375 1.024 H39 9FI 79 9FI H40 H40 H 0 1 N N N 93.253 123.916 115.542 11.436 -2.722 0.311 H40 9FI 80 9FI H42 H42 H 0 1 N N N 95.667 125.274 118.580 -2.516 3.526 -1.324 H42 9FI 81 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9FI C32 C33 DOUB Y N 1 9FI C32 C30 SING Y N 2 9FI C33 C31 SING Y N 3 9FI N4 C15 SING N N 4 9FI C30 C27 DOUB Y N 5 9FI C15 C3 SING N N 6 9FI C31 C29 DOUB Y N 7 9FI C27 C29 SING Y N 8 9FI C27 C26 SING Y N 9 9FI C29 N5 SING Y N 10 9FI O2 C22 DOUB N N 11 9FI C3 C4 SING N N 12 9FI C3 C8 SING N N 13 9FI C4 C2 SING N N 14 9FI C11 C5 SING N N 15 9FI C11 N1 SING N N 16 9FI C5 C1 SING N N 17 9FI C26 C24 SING N N 18 9FI C26 C28 DOUB Y N 19 9FI C24 C20 SING N N 20 9FI C8 C9 SING N N 21 9FI C22 C20 SING N N 22 9FI C22 N2 SING N N 23 9FI N5 C28 SING Y N 24 9FI N3 C20 SING N N 25 9FI N3 C19 SING N N 26 9FI C13 C2 SING N N 27 9FI C13 N2 SING N N 28 9FI C2 C7 SING N N 29 9FI N1 C19 SING N N 30 9FI N1 C12 SING N N 31 9FI C18 C23 SING Y N 32 9FI C18 C10 DOUB Y N 33 9FI C1 C10 SING N N 34 9FI C1 C14 SING N N 35 9FI C1 C6 SING N N 36 9FI C23 C25 DOUB Y N 37 9FI C10 C16 SING Y N 38 9FI C19 O1 DOUB N N 39 9FI C9 C7 SING N N 40 9FI C25 C21 SING Y N 41 9FI C14 C17 DOUB N N 42 9FI C16 C21 DOUB Y N 43 9FI C16 C17 SING N N 44 9FI C12 C6 SING N N 45 9FI C3 H1 SING N N 46 9FI C4 H2 SING N N 47 9FI C4 H3 SING N N 48 9FI C5 H4 SING N N 49 9FI C5 H5 SING N N 50 9FI C6 H6 SING N N 51 9FI C6 H7 SING N N 52 9FI C8 H8 SING N N 53 9FI C8 H9 SING N N 54 9FI C9 H10 SING N N 55 9FI C9 H11 SING N N 56 9FI C13 H12 SING N N 57 9FI C13 H13 SING N N 58 9FI C14 H14 SING N N 59 9FI C15 H15 SING N N 60 9FI C15 H16 SING N N 61 9FI C17 H17 SING N N 62 9FI C18 H18 SING N N 63 9FI C20 H19 SING N N 64 9FI C23 H20 SING N N 65 9FI C24 H21 SING N N 66 9FI C24 H22 SING N N 67 9FI C25 H23 SING N N 68 9FI C28 H24 SING N N 69 9FI C11 H25 SING N N 70 9FI C11 H26 SING N N 71 9FI C12 H27 SING N N 72 9FI C12 H28 SING N N 73 9FI C2 H29 SING N N 74 9FI C21 H30 SING N N 75 9FI C30 H31 SING N N 76 9FI C31 H32 SING N N 77 9FI C32 H33 SING N N 78 9FI C33 H34 SING N N 79 9FI C7 H35 SING N N 80 9FI C7 H36 SING N N 81 9FI N2 H37 SING N N 82 9FI N3 H38 SING N N 83 9FI N4 H39 SING N N 84 9FI N4 H40 SING N N 85 9FI N5 H42 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9FI InChI InChI 1.03 "InChI=1S/C33H41N5O2/c34-20-23-6-5-7-24(18-23)21-36-31(39)30(19-26-22-35-29-11-4-2-9-27(26)29)37-32(40)38-16-14-33(15-17-38)13-12-25-8-1-3-10-28(25)33/h1-4,8-13,22-24,30,35H,5-7,14-21,34H2,(H,36,39)(H,37,40)/t23-,24+,30+/m0/s1" 9FI InChIKey InChI 1.03 DAMXHAMKVXERLM-FVBCXUTKSA-N 9FI SMILES_CANONICAL CACTVS 3.385 "NC[C@H]1CCC[C@@H](CNC(=O)[C@@H](Cc2c[nH]c3ccccc23)NC(=O)N4CCC5(CC4)C=Cc6ccccc56)C1" 9FI SMILES CACTVS 3.385 "NC[CH]1CCC[CH](CNC(=O)[CH](Cc2c[nH]c3ccccc23)NC(=O)N4CCC5(CC4)C=Cc6ccccc56)C1" 9FI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C=CC23CCN(CC3)C(=O)N[C@H](Cc4c[nH]c5c4cccc5)C(=O)NC[C@@H]6CCC[C@@H](C6)CN" 9FI SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C=CC23CCN(CC3)C(=O)NC(Cc4c[nH]c5c4cccc5)C(=O)NCC6CCCC(C6)CN" # _pdbx_chem_comp_identifier.comp_id 9FI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{R})-1-[[(1~{R},3~{S})-3-(aminomethyl)cyclohexyl]methylamino]-3-(1~{H}-indol-3-yl)-1-oxidanylidene-propan-2-yl]spiro[indene-1,4'-piperidine]-1'-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9FI "Create component" 2022-01-14 PDBJ 9FI "Initial release" 2022-06-01 RCSB ##