data_9GI # _chem_comp.id 9GI _chem_comp.name "benzyl [(2S,3R)-3-tert-butoxy-1-{[(2S)-3-cyclohexyl-1-oxo-1-(2-{[(3S)-2-oxopyrrolidin-3-yl]methyl}-2-propanoylhydrazinyl)propan-2-yl]amino}-1-oxobutan-2-yl]carbamate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H51 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 629.787 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9GI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SH7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9GI N N1 N 0 1 N N N N N N -9.719 -15.247 -18.165 -0.384 -0.275 -0.752 N 9GI 1 9GI C C1 C 0 1 N N S N N N -9.827 -17.651 -18.176 2.010 -0.881 -0.895 C 9GI 2 9GI O O1 O 0 1 N N N N N N -10.478 -16.286 -16.325 1.018 0.374 0.840 O 9GI 3 9GI C1 C2 C 0 1 N N N N N N -10.042 -16.337 -17.474 0.847 -0.216 -0.206 C1 9GI 4 9GI C10 C3 C 0 1 N N N N N N -15.043 -15.798 -14.833 -6.614 1.852 0.187 C10 9GI 5 9GI C11 C4 C 0 1 N N N N N N -9.140 -12.888 -18.356 -1.629 1.789 -0.339 C11 9GI 6 9GI C12 C5 C 0 1 N N N N N N -7.759 -12.422 -17.857 -0.403 2.506 0.230 C12 9GI 7 9GI C13 C6 C 0 1 N N R N N N -11.147 -18.370 -18.472 1.918 -2.396 -0.702 C13 9GI 8 9GI C14 C7 C 0 1 N N N N N N -12.315 -17.416 -18.727 3.109 -3.071 -1.386 C14 9GI 9 9GI C15 C8 C 0 1 N N N N N N -7.767 -18.867 -17.692 4.352 -0.242 -1.101 C15 9GI 10 9GI C16 C9 C 0 1 N N N N N N -5.709 -20.072 -16.976 6.660 0.253 -1.456 C16 9GI 11 9GI C17 C10 C 0 1 N N N N N N -11.413 -20.591 -19.412 1.029 -3.739 1.074 C17 9GI 12 9GI C18 C11 C 0 1 N N N N N N -10.692 -21.461 -20.440 -0.407 -3.286 0.804 C18 9GI 13 9GI C19 C12 C 0 1 N N N N N N -12.923 -20.673 -19.662 1.197 -4.042 2.564 C19 9GI 14 9GI C2 C13 C 0 1 N N S N N N -9.833 -13.961 -17.516 -1.530 0.292 -0.038 C2 9GI 15 9GI C20 C14 C 0 1 N N N N N N -11.076 -21.094 -18.006 1.328 -4.999 0.260 C20 9GI 16 9GI C21 C15 C 0 1 N N N N N N -6.722 -12.623 -18.950 -0.412 2.398 1.756 C21 9GI 17 9GI C22 C16 C 0 1 N N N N N N -5.426 -11.869 -18.659 0.814 3.115 2.325 C22 9GI 18 9GI C23 C17 C 0 1 N N N N N N -5.065 -12.003 -17.182 0.778 4.589 1.917 C23 9GI 19 9GI C24 C18 C 0 1 N N N N N N -5.727 -13.232 -16.559 0.787 4.696 0.391 C24 9GI 20 9GI C25 C19 C 0 1 N N N N N N -7.256 -13.134 -16.593 -0.439 3.980 -0.178 C25 9GI 21 9GI C26 C20 C 0 1 Y N N N N N -5.675 -21.203 -17.968 7.884 0.648 -0.671 C26 9GI 22 9GI C27 C21 C 0 1 Y N N N N N -5.345 -20.941 -19.298 8.170 1.985 -0.463 C27 9GI 23 9GI C28 C22 C 0 1 Y N N N N N -5.308 -21.980 -20.218 9.290 2.347 0.261 C28 9GI 24 9GI C29 C23 C 0 1 Y N N N N N -5.611 -23.277 -19.809 10.123 1.373 0.779 C29 9GI 25 9GI C3 C24 C 0 1 N N N N N N -11.300 -13.679 -17.308 -2.793 -0.396 -0.488 C3 9GI 26 9GI C30 C25 C 0 1 Y N N N N N -5.934 -23.531 -18.485 9.837 0.037 0.572 C30 9GI 27 9GI C31 C26 C 0 1 Y N N N N N -5.975 -22.498 -17.553 8.717 -0.326 -0.154 C31 9GI 28 9GI C32 C27 C 0 1 N N N N N N -12.644 -10.702 -17.148 -4.634 -2.504 1.200 C32 9GI 29 9GI C33 C28 C 0 1 N N N N N N -11.634 -9.970 -16.284 -5.211 -3.869 1.578 C33 9GI 30 9GI C5 C29 C 0 1 N N N N N N -13.480 -11.650 -16.311 -5.476 -1.887 0.112 C5 9GI 31 9GI C6 C30 C 0 1 N N N N N N -13.850 -13.675 -15.120 -6.034 -0.026 -1.358 C6 9GI 32 9GI C7 C31 C 0 1 N N S N N N -14.090 -15.045 -15.723 -7.164 0.700 -0.624 C7 9GI 33 9GI C8 C32 C 0 1 N N N N N N -14.791 -15.074 -17.081 -8.123 1.371 -1.634 C8 9GI 34 9GI C9 C33 C 0 1 N N N N N N -15.770 -16.242 -16.977 -8.496 2.675 -0.895 C9 9GI 35 9GI N1 N2 N 0 1 N N N N N N -11.687 -13.159 -16.139 -3.981 -0.035 0.037 N1 9GI 36 9GI N2 N3 N 0 1 N N N N N N -15.882 -16.528 -15.551 -7.378 2.944 0.016 N2 9GI 37 9GI N3 N4 N 0 1 N N N N N N -9.005 -18.513 -17.356 3.264 -0.391 -0.319 N3 9GI 38 9GI N4 N5 N 0 1 N N N N N N -12.970 -12.826 -15.918 -5.155 -0.675 -0.382 N4 9GI 39 9GI O1 O2 O 0 1 N N N N N N -12.098 -13.956 -18.182 -2.741 -1.273 -1.324 O1 9GI 40 9GI O2 O3 O 0 1 N N N N N N -14.613 -11.330 -15.940 -6.442 -2.481 -0.317 O2 9GI 41 9GI O3 O4 O 0 1 N N N N N N -15.016 -15.718 -13.611 -5.629 1.797 0.893 O3 9GI 42 9GI O4 O5 O 0 1 N N N N N N -10.945 -19.241 -19.592 1.935 -2.701 0.694 O4 9GI 43 9GI O5 O6 O 0 1 N N N N N N -7.064 -19.704 -16.751 5.531 0.110 -0.554 O5 9GI 44 9GI O6 O7 O 0 1 N N N N N N -7.206 -18.540 -18.732 4.268 -0.424 -2.299 O6 9GI 45 9GI H1 H1 H 0 1 N N N N N N -9.405 -15.316 -19.112 -0.510 -0.690 -1.619 H1 9GI 46 9GI H2 H2 H 0 1 N N N N N N -9.316 -17.460 -19.131 1.983 -0.648 -1.959 H2 9GI 47 9GI H3 H3 H 0 1 N N N N N N -9.800 -12.008 -18.388 -2.532 2.193 0.120 H3 9GI 48 9GI H4 H4 H 0 1 N N N N N N -9.012 -13.288 -19.373 -1.671 1.940 -1.417 H4 9GI 49 9GI H5 H5 H 0 1 N N N N N N -7.823 -11.346 -17.638 0.503 2.042 -0.161 H5 9GI 50 9GI H6 H6 H 0 1 N N N N N N -11.400 -18.977 -17.590 0.990 -2.763 -1.142 H6 9GI 51 9GI H7 H7 H 0 1 N N N N N N -12.450 -16.759 -17.855 4.029 -2.787 -0.876 H7 9GI 52 9GI H8 H8 H 0 1 N N N N N N -12.102 -16.805 -19.617 2.988 -4.153 -1.342 H8 9GI 53 9GI H9 H9 H 0 1 N N N N N N -13.234 -17.998 -18.893 3.157 -2.753 -2.428 H9 9GI 54 9GI H10 H10 H 0 1 N N N N N N -5.251 -20.396 -16.030 6.438 1.023 -2.196 H10 9GI 55 9GI H11 H11 H 0 1 N N N N N N -5.153 -19.211 -17.377 6.843 -0.695 -1.962 H11 9GI 56 9GI H12 H12 H 0 1 N N N N N N -9.607 -21.409 -20.269 -1.102 -4.025 1.202 H12 9GI 57 9GI H13 H13 H 0 1 N N N N N N -11.029 -22.503 -20.339 -0.582 -2.325 1.288 H13 9GI 58 9GI H14 H14 H 0 1 N N N N N N -10.921 -21.098 -21.453 -0.560 -3.184 -0.270 H14 9GI 59 9GI H15 H15 H 0 1 N N N N N N -13.451 -20.049 -18.926 2.220 -4.364 2.756 H15 9GI 60 9GI H16 H16 H 0 1 N N N N N N -13.147 -20.312 -20.677 0.984 -3.144 3.144 H16 9GI 61 9GI H17 H17 H 0 1 N N N N N N -13.255 -21.717 -19.563 0.506 -4.833 2.854 H17 9GI 62 9GI H18 H18 H 0 1 N N N N N N -9.341 -14.002 -16.533 -1.400 0.145 1.035 H18 9GI 63 9GI H19 H19 H 0 1 N N N N N N -11.592 -20.472 -17.260 1.115 -4.812 -0.792 H19 9GI 64 9GI H20 H20 H 0 1 N N N N N N -11.404 -22.139 -17.902 2.378 -5.267 0.376 H20 9GI 65 9GI H21 H21 H 0 1 N N N N N N -9.989 -21.033 -17.846 0.703 -5.818 0.617 H21 9GI 66 9GI H22 H22 H 0 1 N N N N N N -7.136 -12.261 -19.903 -1.318 2.862 2.148 H22 9GI 67 9GI H23 H23 H 0 1 N N N N N N -6.497 -13.697 -19.032 -0.386 1.348 2.047 H23 9GI 68 9GI H24 H24 H 0 1 N N N N N N -4.615 -12.289 -19.272 0.808 3.039 3.412 H24 9GI 69 9GI H25 H25 H 0 1 N N N N N N -5.560 -10.806 -18.906 1.720 2.652 1.934 H25 9GI 70 9GI H26 H26 H 0 1 N N N N N N -3.973 -12.097 -17.087 -0.128 5.053 2.309 H26 9GI 71 9GI H27 H27 H 0 1 N N N N N N -5.404 -11.103 -16.647 1.652 5.100 2.323 H27 9GI 72 9GI H28 H28 H 0 1 N N N N N N -5.415 -14.126 -17.118 0.761 5.747 0.100 H28 9GI 73 9GI H29 H29 H 0 1 N N N N N N -5.399 -13.321 -15.513 1.693 4.233 -0.000 H29 9GI 74 9GI H30 H30 H 0 1 N N N N N N -7.596 -12.572 -15.710 -0.433 4.056 -1.265 H30 9GI 75 9GI H31 H31 H 0 1 N N N N N N -7.678 -14.150 -16.566 -1.345 4.443 0.214 H31 9GI 76 9GI H32 H32 H 0 1 N N N N N N -5.119 -19.932 -19.611 7.519 2.746 -0.868 H32 9GI 77 9GI H33 H33 H 0 1 N N N N N N -5.045 -21.784 -21.247 9.514 3.391 0.423 H33 9GI 78 9GI H34 H34 H 0 1 N N N N N N -5.594 -24.086 -20.525 10.999 1.656 1.344 H34 9GI 79 9GI H35 H35 H 0 1 N N N N N N -6.156 -24.541 -18.173 10.488 -0.724 0.976 H35 9GI 80 9GI H36 H36 H 0 1 N N N N N N -6.235 -22.698 -16.524 8.491 -1.370 -0.312 H36 9GI 81 9GI H37 H37 H 0 1 N N N N N N -12.110 -11.277 -17.919 -4.637 -1.853 2.074 H37 9GI 82 9GI H38 H38 H 0 1 N N N N N N -13.306 -9.968 -17.631 -3.612 -2.628 0.842 H38 9GI 83 9GI H39 H39 H 0 1 N N N N N N -11.040 -9.289 -16.911 -4.602 -4.316 2.364 H39 9GI 84 9GI H40 H40 H 0 1 N N N N N N -12.163 -9.391 -15.513 -6.233 -3.746 1.936 H40 9GI 85 9GI H41 H41 H 0 1 N Y N N N N -10.967 -10.700 -15.801 -5.209 -4.520 0.703 H41 9GI 86 9GI H42 H42 H 0 1 N N N N N N -13.397 -13.808 -14.127 -6.458 -0.779 -2.023 H42 9GI 87 9GI H43 H43 H 0 1 N N N N N N -14.820 -13.167 -15.015 -5.460 0.693 -1.942 H43 9GI 88 9GI H44 H44 H 0 1 N N N N N N -13.137 -15.590 -15.792 -7.707 0.007 0.018 H44 9GI 89 9GI H45 H45 H 0 1 N N N N N N -14.066 -15.245 -17.890 -7.608 1.587 -2.571 H45 9GI 90 9GI H46 H46 H 0 1 N N N N N N -15.328 -14.131 -17.262 -9.005 0.755 -1.808 H46 9GI 91 9GI H47 H47 H 0 1 N N N N N N -16.750 -15.961 -17.391 -8.611 3.493 -1.607 H47 9GI 92 9GI H48 H48 H 0 1 N N N N N N -15.382 -17.119 -17.516 -9.416 2.537 -0.328 H48 9GI 93 9GI H49 H49 H 0 1 N N N N N N -11.010 -13.015 -15.417 -4.023 0.666 0.705 H49 9GI 94 9GI H50 H50 H 0 1 N N N N N N -16.517 -17.196 -15.162 -7.209 3.802 0.437 H50 9GI 95 9GI H51 H51 H 0 1 N N N N N N -9.384 -18.859 -16.498 3.312 -0.174 0.626 H51 9GI 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9GI C18 C17 SING N N 1 9GI C28 C29 DOUB Y N 2 9GI C28 C27 SING Y N 3 9GI C29 C30 SING Y N 4 9GI C19 C17 SING N N 5 9GI O4 C17 SING N N 6 9GI O4 C13 SING N N 7 9GI C17 C20 SING N N 8 9GI C27 C26 DOUB Y N 9 9GI C21 C22 SING N N 10 9GI C21 C12 SING N N 11 9GI O6 C15 DOUB N N 12 9GI C14 C13 SING N N 13 9GI C22 C23 SING N N 14 9GI C30 C31 DOUB Y N 15 9GI C13 C SING N N 16 9GI C11 C12 SING N N 17 9GI C11 C2 SING N N 18 9GI O1 C3 DOUB N N 19 9GI C C1 SING N N 20 9GI C N3 SING N N 21 9GI N C2 SING N N 22 9GI N C1 SING N N 23 9GI C26 C31 SING Y N 24 9GI C26 C16 SING N N 25 9GI C12 C25 SING N N 26 9GI C15 N3 SING N N 27 9GI C15 O5 SING N N 28 9GI C2 C3 SING N N 29 9GI C1 O DOUB N N 30 9GI C3 N1 SING N N 31 9GI C23 C24 SING N N 32 9GI C32 C5 SING N N 33 9GI C32 C33 SING N N 34 9GI C8 C9 SING N N 35 9GI C8 C7 SING N N 36 9GI C9 N2 SING N N 37 9GI C16 O5 SING N N 38 9GI C25 C24 SING N N 39 9GI C5 O2 DOUB N N 40 9GI C5 N4 SING N N 41 9GI N1 N4 SING N N 42 9GI N4 C6 SING N N 43 9GI C7 C6 SING N N 44 9GI C7 C10 SING N N 45 9GI N2 C10 SING N N 46 9GI C10 O3 DOUB N N 47 9GI N H1 SING N N 48 9GI C H2 SING N N 49 9GI C11 H3 SING N N 50 9GI C11 H4 SING N N 51 9GI C12 H5 SING N N 52 9GI C13 H6 SING N N 53 9GI C14 H7 SING N N 54 9GI C14 H8 SING N N 55 9GI C14 H9 SING N N 56 9GI C16 H10 SING N N 57 9GI C16 H11 SING N N 58 9GI C18 H12 SING N N 59 9GI C18 H13 SING N N 60 9GI C18 H14 SING N N 61 9GI C19 H15 SING N N 62 9GI C19 H16 SING N N 63 9GI C19 H17 SING N N 64 9GI C2 H18 SING N N 65 9GI C20 H19 SING N N 66 9GI C20 H20 SING N N 67 9GI C20 H21 SING N N 68 9GI C21 H22 SING N N 69 9GI C21 H23 SING N N 70 9GI C22 H24 SING N N 71 9GI C22 H25 SING N N 72 9GI C23 H26 SING N N 73 9GI C23 H27 SING N N 74 9GI C24 H28 SING N N 75 9GI C24 H29 SING N N 76 9GI C25 H30 SING N N 77 9GI C25 H31 SING N N 78 9GI C27 H32 SING N N 79 9GI C28 H33 SING N N 80 9GI C29 H34 SING N N 81 9GI C30 H35 SING N N 82 9GI C31 H36 SING N N 83 9GI C32 H37 SING N N 84 9GI C32 H38 SING N N 85 9GI C33 H39 SING N N 86 9GI C33 H40 SING N N 87 9GI C33 H41 SING N N 88 9GI C6 H42 SING N N 89 9GI C6 H43 SING N N 90 9GI C7 H44 SING N N 91 9GI C8 H45 SING N N 92 9GI C8 H46 SING N N 93 9GI C9 H47 SING N N 94 9GI C9 H48 SING N N 95 9GI N1 H49 SING N N 96 9GI N2 H50 SING N N 97 9GI N3 H51 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9GI SMILES ACDLabs 12.01 "CC(C)(C)OC(C)C(NC(=O)OCc1ccccc1)C(=O)NC(CC1CCCCC1)C(=O)NN(CC1CCNC1=O)C(=O)CC" 9GI InChI InChI 1.03 "InChI=1S/C33H51N5O7/c1-6-27(39)38(20-25-17-18-34-29(25)40)37-30(41)26(19-23-13-9-7-10-14-23)35-31(42)28(22(2)45-33(3,4)5)36-32(43)44-21-24-15-11-8-12-16-24/h8,11-12,15-16,22-23,25-26,28H,6-7,9-10,13-14,17-21H2,1-5H3,(H,34,40)(H,35,42)(H,36,43)(H,37,41)/t22-,25+,26+,28+/m1/s1" 9GI InChIKey InChI 1.03 BVMIPNYBILKDCO-NGXSIQFZSA-N 9GI SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N(C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)[C@@H](NC(=O)OCc3ccccc3)[C@@H](C)OC(C)(C)C" 9GI SMILES CACTVS 3.385 "CCC(=O)N(C[CH]1CCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)[CH](NC(=O)OCc3ccccc3)[CH](C)OC(C)(C)C" 9GI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)[C@H]([C@@H](C)OC(C)(C)C)NC(=O)OCc3ccccc3" 9GI SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(CC1CCNC1=O)NC(=O)C(CC2CCCCC2)NC(=O)C(C(C)OC(C)(C)C)NC(=O)OCc3ccccc3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9GI "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl [(2S,3R)-3-tert-butoxy-1-{[(2S)-3-cyclohexyl-1-oxo-1-(2-{[(3S)-2-oxopyrrolidin-3-yl]methyl}-2-propanoylhydrazinyl)propan-2-yl]amino}-1-oxobutan-2-yl]carbamate (non-preferred name)" 9GI "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[2-[[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]methyl]-2-propanoyl-hydrazinyl]propan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9GI "Create component" 2021-10-13 RCSB 9GI "Initial release" 2023-04-12 RCSB 9GI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 9GI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C33 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #