data_9HD # _chem_comp.id 9HD _chem_comp.name "1-[(3R,5S,7R)-1,5,7,9-tetrakis(2-oxopyrrolidin-1-yl)nonan-3-yl]-1,3-dihydro-2H-pyrrol-2-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H43 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Polyvinylpyrrolidone K15" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-05-11 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 541.682 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9HD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5VP8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9HD C01 C1 C 0 1 N N N 39.719 123.367 283.935 -4.836 -2.165 -2.936 C01 9HD 1 9HD C04 C2 C 0 1 N N N 41.094 123.321 283.197 -3.886 -1.414 -2.418 C04 9HD 2 9HD N07 N1 N 0 1 N N N 40.833 122.696 281.823 -3.581 -1.771 -1.117 N07 9HD 3 9HD C08 C3 C 0 1 N N N 39.423 122.204 281.708 -4.334 -2.807 -0.697 C08 9HD 4 9HD C09 C4 C 0 1 N N N 38.670 122.521 283.065 -5.238 -3.156 -1.863 C09 9HD 5 9HD O12 O1 O 0 1 N N N 38.930 121.596 280.716 -4.299 -3.344 0.390 O12 9HD 6 9HD C13 C5 C 0 1 N N R 41.925 122.650 280.730 -2.564 -1.107 -0.299 C13 9HD 7 9HD C15 C6 C 0 1 N N N 42.717 121.319 280.925 -1.185 -1.320 -0.927 C15 9HD 8 9HD C18 C7 C 0 1 N N N 41.328 122.808 279.233 -2.865 0.391 -0.227 C18 9HD 9 9HD C21 C8 C 0 1 N N N 41.222 124.268 278.627 -4.187 0.610 0.513 C21 9HD 10 9HD N24 N2 N 0 1 N N N 40.787 125.163 279.686 -4.476 2.045 0.582 N24 9HD 11 9HD C25 C9 C 0 1 N N N 39.402 125.156 280.293 -5.175 2.723 -0.344 C25 9HD 12 9HD C26 C10 C 0 1 N N N 39.288 126.297 281.453 -5.271 4.182 0.042 C26 9HD 13 9HD C29 C11 C 0 1 N N N 40.757 126.814 281.664 -4.177 4.362 1.120 C29 9HD 14 9HD C32 C12 C 0 1 N N N 41.644 126.241 280.366 -4.044 2.925 1.674 C32 9HD 15 9HD C35 C13 C 0 1 N N S 44.128 121.209 280.313 -0.108 -0.766 0.009 C35 9HD 16 9HD O37 O2 O 0 1 N N N 38.459 124.402 279.983 -5.658 2.236 -1.344 O37 9HD 17 9HD C38 C14 C 0 1 N N N 44.771 119.859 280.561 1.262 -0.888 -0.663 C38 9HD 18 9HD C41 C15 C 0 1 N N R 45.733 119.099 279.509 2.322 -0.222 0.217 C41 9HD 19 9HD N43 N3 N 0 1 N N N 46.767 118.467 280.388 2.056 1.216 0.299 N43 9HD 20 9HD C44 C16 C 0 1 N N N 47.047 117.088 280.584 2.026 2.043 -0.761 C44 9HD 21 9HD C45 C17 C 0 1 N N N 48.191 116.908 281.572 1.734 3.457 -0.309 C45 9HD 22 9HD C48 C18 C 0 1 N N N 48.859 118.289 281.694 2.005 3.432 1.213 C48 9HD 23 9HD C51 C19 C 0 1 N N N 47.689 119.252 281.348 1.783 1.939 1.547 C51 9HD 24 9HD O54 O3 O 0 1 N N N 46.543 116.118 280.071 2.207 1.705 -1.911 O54 9HD 25 9HD C55 C20 C 0 1 N N N 46.223 119.957 278.305 3.707 -0.451 -0.391 C55 9HD 26 9HD C58 C21 C 0 1 N N N 47.189 119.277 277.298 4.776 0.105 0.551 C58 9HD 27 9HD N61 N4 N 0 1 N N N 48.649 119.632 277.454 6.102 -0.114 -0.032 N61 9HD 28 9HD C62 C22 C 0 1 N N N 49.158 120.760 278.356 6.727 0.756 -0.844 C62 9HD 29 9HD C63 C23 C 0 1 N N N 50.685 120.705 278.132 8.071 0.202 -1.264 C63 9HD 30 9HD C66 C24 C 0 1 N N N 50.944 119.904 276.758 7.984 -1.304 -0.922 C66 9HD 31 9HD C69 C25 C 0 1 N N N 49.787 118.916 276.682 6.922 -1.309 0.201 C69 9HD 32 9HD O72 O4 O 0 1 N N N 48.549 121.553 279.072 6.279 1.828 -1.189 O72 9HD 33 9HD C73 C26 C 0 1 N N N 46.275 124.159 281.771 0.014 -3.309 2.780 C73 9HD 34 9HD C76 C27 C 0 1 N N N 45.665 123.286 280.514 0.090 -2.856 1.338 C76 9HD 35 9HD O77 O5 O 0 1 N N N 45.817 123.440 279.272 0.298 -3.585 0.391 O77 9HD 36 9HD N78 N5 N 0 1 N N N 44.882 122.196 281.108 -0.108 -1.529 1.259 N78 9HD 37 9HD C79 C28 C 0 1 N N N 44.888 122.302 282.690 -0.323 -0.942 2.587 C79 9HD 38 9HD C82 C29 C 0 1 N N N 46.167 123.173 283.010 -0.669 -2.131 3.512 C82 9HD 39 9HD H1 H1 H 0 1 N N N 39.511 123.877 284.864 -5.250 -2.087 -3.930 H1 9HD 40 9HD H2 H2 H 0 1 N N N 42.044 123.663 283.580 -3.401 -0.609 -2.949 H2 9HD 41 9HD H3 H3 H 0 1 N N N 37.761 123.111 282.874 -6.285 -3.028 -1.588 H3 9HD 42 9HD H4 H4 H 0 1 N N N 38.400 121.589 283.584 -5.051 -4.175 -2.201 H4 9HD 43 9HD H5 H5 H 0 1 N N N 42.618 123.488 280.899 -2.574 -1.529 0.707 H5 9HD 44 9HD H6 H6 H 0 1 N N N 42.110 120.512 280.489 -1.017 -2.386 -1.083 H6 9HD 45 9HD H7 H7 H 0 1 N N N 42.819 121.157 282.008 -1.137 -0.800 -1.883 H7 9HD 46 9HD H8 H8 H 0 1 N N N 40.314 122.381 279.238 -2.062 0.898 0.307 H8 9HD 47 9HD H9 H9 H 0 1 N N N 41.970 122.220 278.561 -2.943 0.795 -1.236 H9 9HD 48 9HD H10 H10 H 0 1 N N N 42.204 124.587 278.248 -4.990 0.103 -0.021 H10 9HD 49 9HD H11 H11 H 0 1 N N N 40.491 124.279 277.805 -4.109 0.206 1.523 H11 9HD 50 9HD H12 H12 H 0 1 N N N 38.633 127.118 281.125 -5.067 4.819 -0.818 H12 9HD 51 9HD H13 H13 H 0 1 N N N 38.894 125.863 282.384 -6.255 4.403 0.457 H13 9HD 52 9HD H14 H14 H 0 1 N N N 41.167 126.424 282.608 -3.242 4.701 0.674 H14 9HD 53 9HD H15 H15 H 0 1 N N N 40.775 127.914 281.683 -4.507 5.050 1.899 H15 9HD 54 9HD H16 H16 H 0 1 N N N 42.592 125.806 280.717 -4.689 2.791 2.543 H16 9HD 55 9HD H17 H17 H 0 1 N N N 41.855 127.058 279.661 -3.007 2.718 1.938 H17 9HD 56 9HD H18 H18 H 0 1 N N N 44.117 121.460 279.242 -0.316 0.282 0.222 H18 9HD 57 9HD H19 H19 H 0 1 N N N 43.939 119.166 280.756 1.509 -1.941 -0.796 H19 9HD 58 9HD H20 H20 H 0 1 N N N 45.370 119.980 281.476 1.235 -0.395 -1.635 H20 9HD 59 9HD H21 H21 H 0 1 N N N 45.128 118.284 279.084 2.288 -0.655 1.217 H21 9HD 60 9HD H22 H22 H 0 1 N N N 47.806 116.581 282.549 2.402 4.161 -0.804 H22 9HD 61 9HD H23 H23 H 0 1 N N N 48.910 116.166 281.195 0.693 3.714 -0.507 H23 9HD 62 9HD H24 H24 H 0 1 N N N 49.688 118.396 280.979 3.028 3.737 1.432 H24 9HD 63 9HD H25 H25 H 0 1 N N N 49.231 118.463 282.715 1.290 4.059 1.747 H25 9HD 64 9HD H26 H26 H 0 1 N N N 48.072 120.158 280.856 0.754 1.769 1.863 H26 9HD 65 9HD H27 H27 H 0 1 N N N 47.142 119.533 282.260 2.475 1.620 2.326 H27 9HD 66 9HD H28 H28 H 0 1 N N N 46.738 120.839 278.714 3.869 -1.520 -0.534 H28 9HD 67 9HD H29 H29 H 0 1 N N N 45.333 120.280 277.744 3.770 0.058 -1.353 H29 9HD 68 9HD H30 H30 H 0 1 N N N 46.877 119.564 276.283 4.614 1.174 0.694 H30 9HD 69 9HD H31 H31 H 0 1 N N N 47.091 118.188 277.417 4.713 -0.403 1.513 H31 9HD 70 9HD H32 H32 H 0 1 N N N 51.169 120.181 278.969 8.224 0.343 -2.334 H32 9HD 71 9HD H33 H33 H 0 1 N N N 51.090 121.725 278.054 8.873 0.678 -0.699 H33 9HD 72 9HD H34 H34 H 0 1 N N N 51.908 119.375 276.790 7.649 -1.880 -1.784 H34 9HD 73 9HD H35 H35 H 0 1 N N N 50.930 120.589 275.898 8.941 -1.676 -0.554 H35 9HD 74 9HD H36 H36 H 0 1 N N N 49.497 118.730 275.637 7.405 -1.259 1.177 H36 9HD 75 9HD H37 H37 H 0 1 N N N 50.051 117.963 277.165 6.304 -2.204 0.132 H37 9HD 76 9HD H38 H38 H 0 1 N N N 47.322 124.437 281.582 -0.589 -4.213 2.865 H38 9HD 77 9HD H39 H39 H 0 1 N N N 45.679 125.068 281.941 1.013 -3.480 3.181 H39 9HD 78 9HD H40 H40 H 0 1 N N N 43.976 122.799 283.052 0.585 -0.447 2.933 H40 9HD 79 9HD H41 H41 H 0 1 N N N 44.969 121.305 283.148 -1.151 -0.235 2.557 H41 9HD 80 9HD H42 H42 H 0 1 N N N 47.063 122.540 283.086 -1.747 -2.280 3.569 H42 9HD 81 9HD H43 H43 H 0 1 N N N 46.034 123.734 283.947 -0.243 -1.989 4.505 H43 9HD 82 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9HD C69 C66 SING N N 1 9HD C69 N61 SING N N 2 9HD C66 C63 SING N N 3 9HD C58 N61 SING N N 4 9HD C58 C55 SING N N 5 9HD N61 C62 SING N N 6 9HD C63 C62 SING N N 7 9HD C55 C41 SING N N 8 9HD C62 O72 DOUB N N 9 9HD C21 C18 SING N N 10 9HD C21 N24 SING N N 11 9HD C18 C13 SING N N 12 9HD O77 C76 DOUB N N 13 9HD C41 N43 SING N N 14 9HD C41 C38 SING N N 15 9HD N24 C25 SING N N 16 9HD N24 C32 SING N N 17 9HD O37 C25 DOUB N N 18 9HD O54 C44 DOUB N N 19 9HD C25 C26 SING N N 20 9HD C35 C38 SING N N 21 9HD C35 C15 SING N N 22 9HD C35 N78 SING N N 23 9HD C32 C29 SING N N 24 9HD N43 C44 SING N N 25 9HD N43 C51 SING N N 26 9HD C76 N78 SING N N 27 9HD C76 C73 SING N N 28 9HD C44 C45 SING N N 29 9HD O12 C08 DOUB N N 30 9HD C13 C15 SING N N 31 9HD C13 N07 SING N N 32 9HD N78 C79 SING N N 33 9HD C51 C48 SING N N 34 9HD C26 C29 SING N N 35 9HD C45 C48 SING N N 36 9HD C08 N07 SING N N 37 9HD C08 C09 SING N N 38 9HD C73 C82 SING N N 39 9HD N07 C04 SING N N 40 9HD C79 C82 SING N N 41 9HD C09 C01 SING N N 42 9HD C04 C01 DOUB N N 43 9HD C01 H1 SING N N 44 9HD C04 H2 SING N N 45 9HD C09 H3 SING N N 46 9HD C09 H4 SING N N 47 9HD C13 H5 SING N N 48 9HD C15 H6 SING N N 49 9HD C15 H7 SING N N 50 9HD C18 H8 SING N N 51 9HD C18 H9 SING N N 52 9HD C21 H10 SING N N 53 9HD C21 H11 SING N N 54 9HD C26 H12 SING N N 55 9HD C26 H13 SING N N 56 9HD C29 H14 SING N N 57 9HD C29 H15 SING N N 58 9HD C32 H16 SING N N 59 9HD C32 H17 SING N N 60 9HD C35 H18 SING N N 61 9HD C38 H19 SING N N 62 9HD C38 H20 SING N N 63 9HD C41 H21 SING N N 64 9HD C45 H22 SING N N 65 9HD C45 H23 SING N N 66 9HD C48 H24 SING N N 67 9HD C48 H25 SING N N 68 9HD C51 H26 SING N N 69 9HD C51 H27 SING N N 70 9HD C55 H28 SING N N 71 9HD C55 H29 SING N N 72 9HD C58 H30 SING N N 73 9HD C58 H31 SING N N 74 9HD C63 H32 SING N N 75 9HD C63 H33 SING N N 76 9HD C66 H34 SING N N 77 9HD C66 H35 SING N N 78 9HD C69 H36 SING N N 79 9HD C69 H37 SING N N 80 9HD C73 H38 SING N N 81 9HD C73 H39 SING N N 82 9HD C79 H40 SING N N 83 9HD C79 H41 SING N N 84 9HD C82 H42 SING N N 85 9HD C82 H43 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9HD SMILES ACDLabs 12.01 "C1=CN(C(C1)=O)C(CC(CC(N2C(CCC2)=O)CCN3C(=O)CCC3)N4C(CCC4)=O)CCN5C(CCC5)=O" 9HD InChI InChI 1.03 "InChI=1S/C29H43N5O5/c35-25-6-1-13-30(25)18-11-22(32-15-3-8-27(32)37)20-24(34-17-5-10-29(34)39)21-23(33-16-4-9-28(33)38)12-19-31-14-2-7-26(31)36/h3,15,22-24H,1-2,4-14,16-21H2/t22-,23-,24-/m1/s1" 9HD InChIKey InChI 1.03 UBULRTDFHFSWCU-WXFUMESZSA-N 9HD SMILES_CANONICAL CACTVS 3.385 "O=C1CCCN1CC[C@H](C[C@@H](C[C@@H](CCN2CCCC2=O)N3C=CCC3=O)N4CCCC4=O)N5CCCC5=O" 9HD SMILES CACTVS 3.385 "O=C1CCCN1CC[CH](C[CH](C[CH](CCN2CCCC2=O)N3C=CCC3=O)N4CCCC4=O)N5CCCC5=O" 9HD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1CC(=O)N(C1)CC[C@H](C[C@@H](C[C@@H](CCN2CCCC2=O)N3C=CCC3=O)N4CCCC4=O)N5CCCC5=O" 9HD SMILES "OpenEye OEToolkits" 2.0.6 "C1CC(=O)N(C1)CCC(CC(CC(CCN2CCCC2=O)N3C=CCC3=O)N4CCCC4=O)N5CCCC5=O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9HD "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(3R,5S,7R)-1,5,7,9-tetrakis(2-oxopyrrolidin-1-yl)nonan-3-yl]-1,3-dihydro-2H-pyrrol-2-one" 9HD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "1-[(3~{R},5~{S},7~{R})-1,5,7,9-tetrakis(2-oxidanylidenepyrrolidin-1-yl)nonan-3-yl]-3~{H}-pyrrol-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9HD "Create component" 2017-05-11 RCSB 9HD "Initial release" 2018-02-07 RCSB 9HD "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 9HD _pdbx_chem_comp_synonyms.name "Polyvinylpyrrolidone K15" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##