data_9I3 # _chem_comp.id 9I3 _chem_comp.name "3-[(3-chlorophenyl)methyl]-6-[(4-chlorophenyl)methyl]-2,4-dihydro-1H-pyrido[2,3-c][2,7]naphthyridin-5-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H21 Cl2 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-15 _chem_comp.pdbx_modified_date 2024-08-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.360 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9I3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7WKE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9I3 C11 C1 C 0 1 N N N N N N -28.766 -17.736 47.284 -0.014 -2.702 0.193 C11 9I3 1 9I3 C12 C2 C 0 1 N N N N N N -29.575 -17.781 48.338 0.471 -1.652 -0.504 C12 9I3 2 9I3 C13 C3 C 0 1 N N N N N N -31.085 -17.984 48.157 1.946 -1.351 -0.568 C13 9I3 3 9I3 C15 C4 C 0 1 Y N N N N N -27.418 -17.563 47.441 -1.460 -2.938 0.193 C15 9I3 4 9I3 C16 C5 C 0 1 Y N N N N N -26.883 -17.433 48.703 -2.302 -2.069 -0.525 C16 9I3 5 9I3 C21 C6 C 0 1 Y N N N N N -24.729 -17.210 47.816 -4.158 -3.277 0.121 C21 9I3 6 9I3 C25 C7 C 0 1 Y N N N N N -26.690 -15.869 51.227 -3.049 1.029 -1.064 C25 9I3 7 9I3 C30 C8 C 0 1 Y N N N N N -27.638 -14.897 50.956 -4.207 0.916 -0.317 C30 9I3 8 9I3 C01 C9 C 0 1 Y N N N N N -34.967 -15.304 46.909 4.751 1.848 -0.175 C01 9I3 9 9I3 C02 C10 C 0 1 Y N N N N N -35.886 -15.687 47.868 5.022 2.285 1.109 C02 9I3 10 9I3 C03 C11 C 0 1 Y N N N N N -35.779 -16.930 48.460 4.998 1.391 2.163 C03 9I3 11 9I3 C04 C12 C 0 1 Y N N N N N -34.755 -17.785 48.092 4.702 0.060 1.934 C04 9I3 12 9I3 C05 C13 C 0 1 Y N N N N N -33.828 -17.408 47.135 4.431 -0.377 0.651 C05 9I3 13 9I3 C06 C14 C 0 1 Y N N N N N -33.937 -16.162 46.538 4.456 0.516 -0.404 C06 9I3 14 9I3 C07 C15 C 0 1 N N N N N N -32.709 -18.382 46.756 4.109 -1.828 0.402 C07 9I3 15 9I3 C09 C16 C 0 1 N N N N N N -30.728 -18.561 46.055 2.329 -3.469 0.515 C09 9I3 16 9I3 C10 C17 C 0 1 N N N N N N -29.351 -17.882 45.925 0.879 -3.630 0.973 C10 9I3 17 9I3 C18 C18 C 0 1 N N N N N N -29.017 -17.648 49.619 -0.422 -0.805 -1.207 C18 9I3 18 9I3 C19 C19 C 0 1 Y N N N N N -26.588 -17.515 46.370 -2.019 -4.013 0.896 C19 9I3 19 9I3 C20 C20 C 0 1 Y N N N N N -25.255 -17.340 46.547 -3.391 -4.173 0.850 C20 9I3 20 9I3 C24 C21 C 0 1 N N N N N N -27.072 -17.335 51.070 -2.618 -0.103 -1.960 C24 9I3 21 9I3 C26 C22 C 0 1 Y N N N N N -25.409 -15.519 51.621 -2.290 2.183 -0.993 C26 9I3 22 9I3 C27 C23 C 0 1 Y N N N N N -25.081 -14.183 51.758 -2.688 3.224 -0.176 C27 9I3 23 9I3 C28 C24 C 0 1 Y N N N N N -26.035 -13.211 51.495 -3.847 3.111 0.572 C28 9I3 24 9I3 C29 C25 C 0 1 Y N N N N N -27.311 -13.564 51.094 -4.606 1.957 0.501 C29 9I3 25 9I3 N08 N1 N 0 1 N N N N N N -31.519 -17.878 46.890 2.659 -2.035 0.515 N08 9I3 26 9I3 N17 N2 N 0 1 N N N N N N -27.682 -17.480 49.767 -1.747 -1.014 -1.212 N17 9I3 27 9I3 N22 N3 N 0 1 Y N N N N N -25.553 -17.260 48.880 -3.612 -2.272 -0.533 N22 9I3 28 9I3 O23 O1 O 0 1 N N N N N N -29.712 -17.684 50.579 0.028 0.143 -1.826 O23 9I3 29 9I3 CL1 CL1 CL 0 0 N N N N N N -35.128 -13.689 46.160 4.775 2.971 -1.499 CL1 9I3 30 9I3 CL2 CL2 CL 0 0 N N N N N N -25.632 -11.482 51.666 -4.348 4.419 1.598 CL2 9I3 31 9I3 H1 H1 H 0 1 N N N N N N -31.607 -17.228 48.762 2.340 -1.686 -1.527 H1 9I3 32 9I3 H2 H2 H 0 1 N N N N N N -31.342 -18.989 48.524 2.097 -0.275 -0.474 H2 9I3 33 9I3 H3 H3 H 0 1 N N N N N N -23.667 -17.070 47.955 -5.230 -3.407 0.088 H3 9I3 34 9I3 H4 H4 H 0 1 N N N N N N -28.630 -15.181 50.638 -4.799 0.015 -0.372 H4 9I3 35 9I3 H5 H5 H 0 1 N N N N N N -36.684 -15.017 48.153 5.254 3.325 1.288 H5 9I3 36 9I3 H6 H6 H 0 1 N N N N N N -36.494 -17.235 49.210 5.209 1.733 3.165 H6 9I3 37 9I3 H7 H7 H 0 1 N N N N N N -34.678 -18.757 48.556 4.683 -0.638 2.757 H7 9I3 38 9I3 H8 H8 H 0 1 N N N N N N -33.224 -15.858 45.786 4.244 0.174 -1.406 H8 9I3 39 9I3 H9 H9 H 0 1 N N N N N N -32.846 -18.679 45.706 4.439 -2.107 -0.599 H9 9I3 40 9I3 H10 H10 H 0 1 N N N N N N -32.786 -19.270 47.401 4.623 -2.446 1.139 H10 9I3 41 9I3 H11 H11 H 0 1 N N N N N N -31.203 -18.605 45.064 2.992 -3.999 1.200 H11 9I3 42 9I3 H12 H12 H 0 1 N N N N N N -30.591 -19.582 46.442 2.444 -3.872 -0.492 H12 9I3 43 9I3 H13 H13 H 0 1 N N N N N N -28.690 -18.501 45.301 0.807 -3.394 2.034 H13 9I3 44 9I3 H14 H14 H 0 1 N N N N N N -29.468 -16.891 45.463 0.561 -4.659 0.810 H14 9I3 45 9I3 H15 H15 H 0 1 N N N N N N -26.990 -17.616 45.373 -1.397 -4.696 1.455 H15 9I3 46 9I3 H16 H16 H 0 1 N N N N N N -24.600 -17.302 45.689 -3.861 -4.989 1.378 H16 9I3 47 9I3 H17 H17 H 0 1 N N N N N N -27.786 -17.625 51.855 -3.496 -0.645 -2.309 H17 9I3 48 9I3 H18 H18 H 0 1 N N N N N N -26.175 -17.968 51.139 -2.074 0.298 -2.815 H18 9I3 49 9I3 H19 H19 H 0 1 N N N N N N -24.672 -16.284 51.820 -1.386 2.270 -1.577 H19 9I3 50 9I3 H20 H20 H 0 1 N N N N N N -24.087 -13.897 52.068 -2.095 4.124 -0.121 H20 9I3 51 9I3 H21 H21 H 0 1 N N N N N N -28.047 -12.800 50.890 -5.510 1.868 1.085 H21 9I3 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9I3 C10 C09 SING N N 1 9I3 C10 C11 SING N N 2 9I3 C09 N08 SING N N 3 9I3 CL1 C01 SING N N 4 9I3 C19 C20 DOUB Y N 5 9I3 C19 C15 SING Y N 6 9I3 C06 C01 DOUB Y N 7 9I3 C06 C05 SING Y N 8 9I3 C20 C21 SING Y N 9 9I3 C07 N08 SING N N 10 9I3 C07 C05 SING N N 11 9I3 N08 C13 SING N N 12 9I3 C01 C02 SING Y N 13 9I3 C05 C04 DOUB Y N 14 9I3 C11 C15 SING N N 15 9I3 C11 C12 DOUB N N 16 9I3 C15 C16 DOUB Y N 17 9I3 C21 N22 DOUB Y N 18 9I3 C02 C03 DOUB Y N 19 9I3 C04 C03 SING Y N 20 9I3 C13 C12 SING N N 21 9I3 C12 C18 SING N N 22 9I3 C16 N22 SING Y N 23 9I3 C16 N17 SING N N 24 9I3 C18 N17 SING N N 25 9I3 C18 O23 DOUB N N 26 9I3 N17 C24 SING N N 27 9I3 C30 C29 DOUB Y N 28 9I3 C30 C25 SING Y N 29 9I3 C24 C25 SING N N 30 9I3 C29 C28 SING Y N 31 9I3 C25 C26 DOUB Y N 32 9I3 C28 CL2 SING N N 33 9I3 C28 C27 DOUB Y N 34 9I3 C26 C27 SING Y N 35 9I3 C13 H1 SING N N 36 9I3 C13 H2 SING N N 37 9I3 C21 H3 SING N N 38 9I3 C30 H4 SING N N 39 9I3 C02 H5 SING N N 40 9I3 C03 H6 SING N N 41 9I3 C04 H7 SING N N 42 9I3 C06 H8 SING N N 43 9I3 C07 H9 SING N N 44 9I3 C07 H10 SING N N 45 9I3 C09 H11 SING N N 46 9I3 C09 H12 SING N N 47 9I3 C10 H13 SING N N 48 9I3 C10 H14 SING N N 49 9I3 C19 H15 SING N N 50 9I3 C20 H16 SING N N 51 9I3 C24 H17 SING N N 52 9I3 C24 H18 SING N N 53 9I3 C26 H19 SING N N 54 9I3 C27 H20 SING N N 55 9I3 C29 H21 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9I3 InChI InChI 1.03 "InChI=1S/C25H21Cl2N3O/c26-19-8-6-17(7-9-19)15-30-24-22(5-2-11-28-24)21-10-12-29(16-23(21)25(30)31)14-18-3-1-4-20(27)13-18/h1-9,11,13H,10,12,14-16H2" 9I3 InChIKey InChI 1.03 JCFSCDLNZWVEMF-UHFFFAOYSA-N 9I3 SMILES_CANONICAL CACTVS 3.385 "Clc1ccc(CN2C(=O)C3=C(CCN(Cc4cccc(Cl)c4)C3)c5cccnc25)cc1" 9I3 SMILES CACTVS 3.385 "Clc1ccc(CN2C(=O)C3=C(CCN(Cc4cccc(Cl)c4)C3)c5cccnc25)cc1" 9I3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)CN2CCC3=C(C2)C(=O)N(c4c3cccn4)Cc5ccc(cc5)Cl" 9I3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)CN2CCC3=C(C2)C(=O)N(c4c3cccn4)Cc5ccc(cc5)Cl" # _pdbx_chem_comp_identifier.comp_id 9I3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[(3-chlorophenyl)methyl]-6-[(4-chlorophenyl)methyl]-2,4-dihydro-1~{H}-pyrido[2,3-c][2,7]naphthyridin-5-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9I3 "Create component" 2022-01-15 PDBJ 9I3 "Initial release" 2024-09-04 RCSB #