data_9IJ # _chem_comp.id 9IJ _chem_comp.name 2-cyano-L-phenylalanine _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H10 N2 O2" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-18 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 190.199 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9IJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SJJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9IJ N N N 0 1 N N N Y Y N 8.929 0.932 -7.552 -1.120 0.956 -1.119 N 9IJ 1 9IJ CA CA C 0 1 N N S Y N N 9.648 0.715 -8.810 -1.402 -0.329 -0.465 CA 9IJ 2 9IJ C C C 0 1 N N N Y N Y 8.701 0.071 -9.813 -2.856 -0.385 -0.074 C 9IJ 3 9IJ CB CB C 0 1 N N N N N N 10.840 -0.203 -8.560 -0.532 -0.466 0.786 CB 9IJ 4 9IJ CG CG C 0 1 Y N N N N N 11.905 0.352 -7.649 0.919 -0.533 0.384 CG 9IJ 5 9IJ CD1 CD1 C 0 1 Y N N N N N 12.115 1.729 -7.463 1.536 -1.756 0.222 CD1 9IJ 6 9IJ CD2 CD2 C 0 1 Y N N N N N 12.792 -0.532 -7.022 1.641 0.643 0.168 CD2 9IJ 7 9IJ CE1 CE1 C 0 1 Y N N N N N 13.181 2.205 -6.703 2.868 -1.820 -0.147 CE1 9IJ 8 9IJ CE2 CE2 C 0 1 Y N N N N N 13.886 -0.047 -6.262 2.984 0.571 -0.205 CE2 9IJ 9 9IJ CZ CZ C 0 1 Y N N N N N 14.077 1.318 -6.116 3.590 -0.659 -0.357 CZ 9IJ 10 9IJ C01 C01 C 0 1 N N N N N N 12.567 -1.932 -7.140 1.005 1.916 0.327 C01 9IJ 11 9IJ N01 N01 N 0 1 N N N N N N 12.348 -3.062 -7.250 0.502 2.926 0.454 N01 9IJ 12 9IJ O O O 0 1 N N N Y N Y 8.180 -1.055 -9.533 -3.495 0.636 0.026 O 9IJ 13 9IJ H H H 0 1 N N N Y Y N 9.543 1.355 -6.885 -1.635 1.043 -1.983 H 9IJ 14 9IJ H2 H2 H 0 1 N Y N Y Y N 8.147 1.534 -7.715 -1.319 1.728 -0.501 H2 9IJ 15 9IJ HA HA H 0 1 N N N Y N N 10.006 1.674 -9.211 -1.179 -1.143 -1.154 HA 9IJ 16 9IJ HB2 HB2 H 0 1 N N N N N N 10.463 -1.134 -8.113 -0.689 0.396 1.434 HB2 9IJ 17 9IJ HB3 HB3 H 0 1 N N N N N N 11.306 -0.425 -9.531 -0.803 -1.377 1.319 HB3 9IJ 18 9IJ HD1 HD1 H 0 1 N N N N N N 11.435 2.433 -7.919 0.978 -2.667 0.385 HD1 9IJ 19 9IJ HE1 HE1 H 0 1 N N N N N N 13.312 3.269 -6.569 3.345 -2.780 -0.272 HE1 9IJ 20 9IJ HE2 HE2 H 0 1 N N N N N N 14.570 -0.741 -5.797 3.548 1.477 -0.373 HE2 9IJ 21 9IJ HZ HZ H 0 1 N N N N N N 14.917 1.691 -5.549 4.630 -0.716 -0.644 HZ 9IJ 22 9IJ OXT OXT O 0 1 N Y N Y N Y 8.490 0.676 -10.989 -3.442 -1.569 0.163 OXT 9IJ 23 9IJ HXT H1 H 0 1 N Y N Y N Y 7.920 0.137 -11.525 -4.377 -1.554 0.411 H1 9IJ 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9IJ C O DOUB N N 1 9IJ C CA SING N N 2 9IJ CA CB SING N N 3 9IJ CA N SING N N 4 9IJ CB CG SING N N 5 9IJ CG CD1 DOUB Y N 6 9IJ CG CD2 SING Y N 7 9IJ CD1 CE1 SING Y N 8 9IJ N01 C01 TRIP N N 9 9IJ C01 CD2 SING N N 10 9IJ CD2 CE2 DOUB Y N 11 9IJ CE1 CZ DOUB Y N 12 9IJ CE2 CZ SING Y N 13 9IJ N H SING N N 14 9IJ N H2 SING N N 15 9IJ CA HA SING N N 16 9IJ CB HB2 SING N N 17 9IJ CB HB3 SING N N 18 9IJ CD1 HD1 SING N N 19 9IJ CE1 HE1 SING N N 20 9IJ CE2 HE2 SING N N 21 9IJ CZ HZ SING N N 22 9IJ C OXT SING N N 23 9IJ OXT HXT SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9IJ SMILES ACDLabs 12.01 "NC(Cc1ccccc1C#N)C(=O)O" 9IJ InChI InChI 1.03 "InChI=1S/C10H10N2O2/c11-6-8-4-2-1-3-7(8)5-9(12)10(13)14/h1-4,9H,5,12H2,(H,13,14)/t9-/m0/s1" 9IJ InChIKey InChI 1.03 OCDHPLVCNWBKJN-VIFPVBQESA-N 9IJ SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1ccccc1C#N)C(O)=O" 9IJ SMILES CACTVS 3.385 "N[CH](Cc1ccccc1C#N)C(O)=O" 9IJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C[C@@H](C(=O)O)N)C#N" 9IJ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CC(C(=O)O)N)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9IJ "SYSTEMATIC NAME" ACDLabs 12.01 2-cyano-L-phenylalanine 9IJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-azanyl-3-(2-cyanophenyl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9IJ "Create component" 2021-10-18 RCSB 9IJ "Initial release" 2022-05-11 RCSB 9IJ "Modify backbone" 2023-11-03 PDBE 9IJ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 9IJ _pdbx_chem_comp_pcm.modified_residue_id PHE _pdbx_chem_comp_pcm.type Cyanation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #