data_9IZ # _chem_comp.id 9IZ _chem_comp.name "1-pyridin-2-yl-~{N}-(pyridin-2-ylmethyl)-~{N}-[(6-pyridin-2-ylpyridin-2-yl)methyl]methanamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H21 N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-18 _chem_comp.pdbx_modified_date 2023-01-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.446 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9IZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7WLF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9IZ CAB C1 C 0 1 Y N N 47.994 -7.099 -24.984 6.279 0.233 -0.589 CAB 9IZ 1 9IZ CAC C2 C 0 1 Y N N 48.991 -6.363 -24.339 6.460 -0.685 0.430 CAC 9IZ 2 9IZ CAD C3 C 0 1 Y N N 48.651 -5.325 -23.528 5.392 -1.002 1.257 CAD 9IZ 3 9IZ CAE C4 C 0 1 Y N N 47.333 -5.010 -23.347 4.174 -0.382 1.031 CAE 9IZ 4 9IZ CAF C5 C 0 1 Y N N 46.354 -5.753 -24.003 4.064 0.533 -0.014 CAF 9IZ 5 9IZ CAG C6 C 0 1 Y N N 44.880 -5.498 -23.856 2.766 1.205 -0.269 CAG 9IZ 6 9IZ CAH C7 C 0 1 Y N N 44.276 -4.989 -22.704 2.656 2.120 -1.314 CAH 9IZ 7 9IZ CAI C8 C 0 1 Y N N 42.876 -4.818 -22.702 1.439 2.739 -1.540 CAI 9IZ 8 9IZ CAJ C9 C 0 1 Y N N 42.129 -5.187 -23.843 0.371 2.422 -0.713 CAJ 9IZ 9 9IZ CAK C10 C 0 1 Y N N 42.827 -5.685 -24.936 0.551 1.504 0.306 CAK 9IZ 10 9IZ CAM C11 C 0 1 N N N 42.186 -6.135 -26.251 -0.608 1.151 1.202 CAM 9IZ 11 9IZ CAO C12 C 0 1 N N N 43.343 -6.656 -28.219 -0.502 -1.258 0.988 CAO 9IZ 12 9IZ CAP C13 C 0 1 N N N 42.811 -8.378 -26.608 -2.646 -0.156 1.213 CAP 9IZ 13 9IZ CAQ C14 C 0 1 Y N N 44.468 -5.597 -28.356 -1.084 -2.429 0.240 CAQ 9IZ 14 9IZ CAR C15 C 0 1 Y N N 43.422 -8.854 -25.249 -3.518 0.887 0.563 CAR 9IZ 15 9IZ CAS C16 C 0 1 Y N N 44.284 -4.441 -29.160 -0.549 -2.794 -0.982 CAS 9IZ 16 9IZ CAT C17 C 0 1 Y N N 45.300 -3.524 -29.270 -1.092 -3.874 -1.661 CAT 9IZ 17 9IZ CAU C18 C 0 1 Y N N 46.486 -3.728 -28.625 -2.157 -4.549 -1.085 CAU 9IZ 18 9IZ CAV C19 C 0 1 Y N N 46.686 -4.874 -27.851 -2.638 -4.127 0.140 CAV 9IZ 19 9IZ CAY C20 C 0 1 Y N N 45.256 -8.924 -23.750 -4.323 3.045 0.539 CAY 9IZ 20 9IZ CAZ C21 C 0 1 Y N N 44.527 -9.702 -22.854 -5.084 2.791 -0.586 CAZ 9IZ 21 9IZ CBA C22 C 0 1 Y N N 43.239 -10.050 -23.172 -5.056 1.523 -1.149 CBA 9IZ 22 9IZ CBB C23 C 0 1 Y N N 42.681 -9.641 -24.363 -4.256 0.557 -0.558 CBB 9IZ 23 9IZ NAA N1 N 0 1 Y N N 46.678 -6.791 -24.826 5.110 0.808 -0.782 NAA 9IZ 24 9IZ NAL N2 N 0 1 Y N N 44.151 -5.839 -24.908 1.719 0.925 0.496 NAL 9IZ 25 9IZ NAN N3 N 0 1 N N N 43.215 -6.989 -26.803 -1.279 -0.049 0.686 NAN 9IZ 26 9IZ NAW N4 N 0 1 Y N N 45.652 -5.795 -27.713 -2.094 -3.098 0.760 NAW 9IZ 27 9IZ NAX N5 N 0 1 Y N N 44.703 -8.501 -24.942 -3.574 2.101 1.074 NAX 9IZ 28 9IZ H1 H1 H 0 1 N N N 48.273 -7.927 -25.619 7.110 0.486 -1.231 H1 9IZ 29 9IZ H2 H2 H 0 1 N N N 50.030 -6.618 -24.484 7.422 -1.151 0.580 H2 9IZ 30 9IZ H3 H3 H 0 1 N N N 49.419 -4.752 -23.029 5.507 -1.716 2.059 H3 9IZ 31 9IZ H4 H4 H 0 1 N N N 47.053 -4.191 -22.700 3.322 -0.606 1.655 H4 9IZ 32 9IZ H5 H5 H 0 1 N N N 44.866 -4.733 -21.837 3.509 2.343 -1.938 H5 9IZ 33 9IZ H6 H6 H 0 1 N N N 42.379 -4.408 -21.835 1.323 3.453 -2.342 H6 9IZ 34 9IZ H7 H7 H 0 1 N N N 41.054 -5.086 -23.865 -0.592 2.888 -0.863 H7 9IZ 35 9IZ H8 H8 H 0 1 N N N 41.980 -5.279 -26.910 -0.241 0.957 2.210 H8 9IZ 36 9IZ H9 H9 H 0 1 N N N 41.255 -6.693 -26.073 -1.314 1.981 1.226 H9 9IZ 37 9IZ H10 H10 H 0 1 N N N 42.394 -6.245 -28.594 -0.539 -1.456 2.059 H10 9IZ 38 9IZ H11 H11 H 0 1 N N N 43.605 -7.557 -28.793 0.534 -1.110 0.682 H11 9IZ 39 9IZ H12 H12 H 0 1 N N N 41.714 -8.450 -26.573 -2.632 0.003 2.292 H12 9IZ 40 9IZ H13 H13 H 0 1 N N N 43.193 -9.000 -27.431 -3.042 -1.148 0.997 H13 9IZ 41 9IZ H14 H14 H 0 1 N N N 43.351 -4.284 -29.681 0.281 -2.245 -1.401 H14 9IZ 42 9IZ H15 H15 H 0 1 N N N 45.160 -2.637 -29.870 -0.695 -4.181 -2.618 H15 9IZ 43 9IZ H16 H16 H 0 1 N N N 47.276 -2.997 -28.714 -2.605 -5.394 -1.586 H16 9IZ 44 9IZ H17 H17 H 0 1 N N N 47.635 -5.044 -27.364 -3.468 -4.647 0.595 H17 9IZ 45 9IZ H18 H18 H 0 1 N N N 46.271 -8.647 -23.508 -4.339 4.030 0.983 H18 9IZ 46 9IZ H19 H19 H 0 1 N N N 44.969 -10.026 -21.923 -5.692 3.569 -1.022 H19 9IZ 47 9IZ H20 H20 H 0 1 N N N 42.659 -10.648 -22.485 -5.640 1.296 -2.029 H20 9IZ 48 9IZ H21 H21 H 0 1 N N N 41.670 -9.929 -24.612 -4.210 -0.440 -0.970 H21 9IZ 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9IZ CAT CAS DOUB Y N 1 9IZ CAT CAU SING Y N 2 9IZ CAS CAQ SING Y N 3 9IZ CAU CAV DOUB Y N 4 9IZ CAQ CAO SING N N 5 9IZ CAQ NAW DOUB Y N 6 9IZ CAO NAN SING N N 7 9IZ CAV NAW SING Y N 8 9IZ NAN CAP SING N N 9 9IZ NAN CAM SING N N 10 9IZ CAP CAR SING N N 11 9IZ CAM CAK SING N N 12 9IZ CAR NAX DOUB Y N 13 9IZ CAR CBB SING Y N 14 9IZ CAB NAA SING Y N 15 9IZ CAB CAC DOUB Y N 16 9IZ NAX CAY SING Y N 17 9IZ CAK NAL DOUB Y N 18 9IZ CAK CAJ SING Y N 19 9IZ NAL CAG SING Y N 20 9IZ NAA CAF DOUB Y N 21 9IZ CBB CBA DOUB Y N 22 9IZ CAC CAD SING Y N 23 9IZ CAF CAG SING N N 24 9IZ CAF CAE SING Y N 25 9IZ CAG CAH DOUB Y N 26 9IZ CAJ CAI DOUB Y N 27 9IZ CAY CAZ DOUB Y N 28 9IZ CAD CAE DOUB Y N 29 9IZ CBA CAZ SING Y N 30 9IZ CAH CAI SING Y N 31 9IZ CAB H1 SING N N 32 9IZ CAC H2 SING N N 33 9IZ CAD H3 SING N N 34 9IZ CAE H4 SING N N 35 9IZ CAH H5 SING N N 36 9IZ CAI H6 SING N N 37 9IZ CAJ H7 SING N N 38 9IZ CAM H8 SING N N 39 9IZ CAM H9 SING N N 40 9IZ CAO H10 SING N N 41 9IZ CAO H11 SING N N 42 9IZ CAP H12 SING N N 43 9IZ CAP H13 SING N N 44 9IZ CAS H14 SING N N 45 9IZ CAT H15 SING N N 46 9IZ CAU H16 SING N N 47 9IZ CAV H17 SING N N 48 9IZ CAY H18 SING N N 49 9IZ CAZ H19 SING N N 50 9IZ CBA H20 SING N N 51 9IZ CBB H21 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9IZ InChI InChI 1.03 "InChI=1S/C23H21N5/c1-4-13-24-19(8-1)16-28(17-20-9-2-5-14-25-20)18-21-10-7-12-23(27-21)22-11-3-6-15-26-22/h1-15H,16-18H2" 9IZ InChIKey InChI 1.03 IAYCCYKQDTVUPA-UHFFFAOYSA-N 9IZ SMILES_CANONICAL CACTVS 3.385 "C(N(Cc1ccccn1)Cc2cccc(n2)c3ccccn3)c4ccccn4" 9IZ SMILES CACTVS 3.385 "C(N(Cc1ccccn1)Cc2cccc(n2)c3ccccn3)c4ccccn4" 9IZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)CN(Cc2ccccn2)Cc3cccc(n3)c4ccccn4" 9IZ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccnc(c1)CN(Cc2ccccn2)Cc3cccc(n3)c4ccccn4" # _pdbx_chem_comp_identifier.comp_id 9IZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-pyridin-2-yl-~{N}-(pyridin-2-ylmethyl)-~{N}-[(6-pyridin-2-ylpyridin-2-yl)methyl]methanamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9IZ "Create component" 2022-01-18 PDBJ 9IZ "Initial release" 2023-01-18 RCSB #