data_9JC # _chem_comp.id 9JC _chem_comp.name "4-(aminomethyl)-8-azanyl-quinoline-2-carbaldehyde" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C11 H11 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-15 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 217.224 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9JC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Q8U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9JC C C92 C 0 1 N N N N Y Y -4.768 19.591 27.249 3.034 0.186 -0.004 C 9JC 1 9JC C93 C93 C 0 1 N N N N N N -5.811 14.592 27.883 -0.836 -2.930 0.422 C93 9JC 2 9JC C94 C94 C 0 1 Y N N N N N -5.950 16.061 28.318 -0.275 -1.540 0.266 C94 9JC 3 9JC C95 C95 C 0 1 Y N N N N N -5.318 17.091 27.586 1.072 -1.331 0.205 C95 9JC 4 9JC CA C96 C 0 1 Y N N N Y N -5.472 18.433 28.011 1.570 -0.027 0.060 CA 9JC 5 9JC C97 C97 C 0 1 Y N N N N N -7.406 15.443 30.254 -2.522 -0.567 0.223 C97 9JC 6 9JC C98 C98 C 0 1 Y N N N N N -6.731 16.427 29.470 -1.127 -0.423 0.174 C98 9JC 7 9JC C99 C99 C 0 1 Y N N N Y N -6.828 17.754 29.816 -0.558 0.869 0.027 C99 9JC 8 9JC N N27 N 0 1 N N N Y Y N -7.655 19.601 31.228 -0.889 3.270 -0.210 N 9JC 9 9JC N4 N4 N 0 1 Y N N N Y N -6.194 18.734 29.087 0.763 1.014 -0.021 N4 9JC 10 9JC N5 N5 N 0 1 N N N N N N -5.303 14.537 26.522 -1.276 -3.430 -0.887 N5 9JC 11 9JC O O17 O 0 1 N N N N Y Y -4.451 19.471 26.108 3.789 -0.763 0.064 O 9JC 12 9JC C100 C100 C 0 0 Y N N N Y N -7.577 18.151 30.961 -1.418 1.991 -0.065 C100 9JC 13 9JC C101 C101 C 0 0 Y N N N N N -8.250 17.191 31.722 -2.782 1.805 -0.012 C101 9JC 14 9JC C102 C102 C 0 0 Y N N N N N -8.159 15.832 31.370 -3.323 0.531 0.132 C102 9JC 15 9JC H6 H2 H 0 1 N N N N N N -6.795 14.101 27.928 -0.066 -3.589 0.824 H6 9JC 16 9JC H3 H3 H 0 1 N N N N N N -5.112 14.074 28.557 -1.685 -2.904 1.105 H3 9JC 17 9JC H4 H4 H 0 1 N N N N N N -4.725 16.858 26.714 1.753 -2.167 0.269 H4 9JC 18 9JC H5 H5 H 0 1 N N N N N N -7.336 14.399 29.987 -2.960 -1.548 0.334 H5 9JC 19 9JC H H6 H 0 1 N N N Y Y N -8.202 19.760 32.050 0.072 3.396 -0.247 H 9JC 20 9JC H2 H7 H 0 1 N Y N Y Y N -6.734 19.965 31.365 -1.481 4.036 -0.273 H2 9JC 21 9JC H8 H8 H 0 1 N N N N N N -5.212 13.583 26.238 -1.656 -4.362 -0.809 H8 9JC 22 9JC H9 H9 H 0 1 N N N N N N -5.938 15.008 25.910 -1.942 -2.802 -1.309 H9 9JC 23 9JC H11 H11 H 0 1 N N N N N N -8.838 17.491 32.577 -3.439 2.659 -0.083 H11 9JC 24 9JC H12 H12 H 0 1 N N N N N N -8.671 15.087 31.961 -4.396 0.411 0.170 H12 9JC 25 9JC OXT OXT O 0 1 N Y N N Y Y ? ? ? 3.528 1.431 -0.144 O1 9JC 26 9JC HXT HXT H 0 1 N Y N N Y Y ? ? ? 4.490 1.520 -0.181 H1 9JC 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9JC O C DOUB N N 1 9JC N5 C93 SING N N 2 9JC C CA SING N N 3 9JC C95 CA DOUB Y N 4 9JC C95 C94 SING Y N 5 9JC C93 C94 SING N N 6 9JC CA N4 SING Y N 7 9JC C94 C98 DOUB Y N 8 9JC N4 C99 DOUB Y N 9 9JC C98 C99 SING Y N 10 9JC C98 C97 SING Y N 11 9JC C99 C100 SING Y N 12 9JC C97 C102 DOUB Y N 13 9JC C100 N SING N N 14 9JC C100 C101 DOUB Y N 15 9JC C102 C101 SING Y N 16 9JC C93 H6 SING N N 17 9JC C93 H3 SING N N 18 9JC C95 H4 SING N N 19 9JC C97 H5 SING N N 20 9JC N H SING N N 21 9JC N H2 SING N N 22 9JC N5 H8 SING N N 23 9JC N5 H9 SING N N 24 9JC C101 H11 SING N N 25 9JC C102 H12 SING N N 26 9JC C OXT SING N N 27 9JC OXT HXT SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9JC InChI InChI 1.06 "InChI=1S/C11H11N3O2/c12-5-6-4-9(11(15)16)14-10-7(6)2-1-3-8(10)13/h1-4H,5,12-13H2,(H,15,16)" 9JC InChIKey InChI 1.06 AMKRFCLMQBLGKF-UHFFFAOYSA-N 9JC SMILES_CANONICAL CACTVS 3.385 "NCc1cc(nc2c(N)cccc12)C(O)=O" 9JC SMILES CACTVS 3.385 "NCc1cc(nc2c(N)cccc12)C(O)=O" 9JC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc(nc2c(c1)N)C(=O)O)CN" 9JC SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc(nc2c(c1)N)C(=O)O)CN" # _pdbx_chem_comp_identifier.comp_id 9JC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-(aminomethyl)-8-azanyl-quinoline-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9JC "Create component" 2021-11-15 PDBE 9JC "Modify descriptor" 2022-08-22 RCSB 9JC "Initial release" 2023-09-27 RCSB 9JC "Modify backbone" 2023-11-03 PDBE 9JC "Other modification" 2024-06-28 PDBE #