data_9JD # _chem_comp.id 9JD _chem_comp.name ;methyl [(4S)-4-{(3R)-1-[(3S)-4-amino-3-hydroxybutanoyl]piperidin-3-yl}-4-(3'-ethyl-6-fluoro[1,1'-biphenyl]-2-yl)-4-hydroxybutyl]carbamate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H40 F N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-05-15 _chem_comp.pdbx_modified_date 2017-10-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 529.643 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9JD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5VRP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9JD C10 C1 C 0 1 Y N N 21.728 40.850 14.548 1.016 -1.714 2.860 C10 9JD 1 9JD C12 C2 C 0 1 Y N N 21.475 41.125 15.864 1.272 -0.845 3.905 C12 9JD 2 9JD C13 C3 C 0 1 Y N N 22.541 41.472 16.672 1.270 0.520 3.688 C13 9JD 3 9JD C14 C4 C 0 1 Y N N 23.825 41.537 16.155 1.014 1.025 2.426 C14 9JD 4 9JD C15 C5 C 0 1 Y N N 24.078 41.247 14.817 0.758 0.168 1.375 C15 9JD 5 9JD C16 C6 C 0 1 N N S 25.522 41.343 14.272 0.479 0.721 0.001 C16 9JD 6 9JD C18 C7 C 0 1 N N N 25.813 42.660 13.518 1.554 1.748 -0.363 C18 9JD 7 9JD C19 C8 C 0 1 N N N 24.844 43.821 13.778 2.921 1.062 -0.409 C19 9JD 8 9JD N21 N1 N 0 1 N N N 26.390 45.271 12.525 5.303 1.431 -0.817 N21 9JD 9 9JD O23 O1 O 0 1 N N N 26.255 47.356 13.388 6.315 3.333 -1.356 O23 9JD 10 9JD O24 O2 O 0 1 N N N 28.243 46.401 12.914 7.609 1.541 -1.161 O24 9JD 11 9JD C01 C9 C 0 1 N N N 23.122 43.054 8.752 2.678 -5.691 -1.234 C01 9JD 12 9JD C02 C10 C 0 1 N N N 24.247 42.299 9.357 2.410 -4.352 -1.924 C02 9JD 13 9JD C03 C11 C 0 1 Y N N 23.783 41.260 10.283 1.274 -3.647 -1.230 C03 9JD 14 9JD C04 C12 C 0 1 Y N N 23.506 39.980 9.833 -0.028 -3.863 -1.643 C04 9JD 15 9JD C05 C13 C 0 1 Y N N 23.069 39.004 10.709 -1.076 -3.218 -1.009 C05 9JD 16 9JD C06 C14 C 0 1 Y N N 22.900 39.296 12.050 -0.826 -2.356 0.039 C06 9JD 17 9JD C07 C15 C 0 1 Y N N 23.159 40.576 12.530 0.484 -2.135 0.459 C07 9JD 18 9JD C08 C16 C 0 1 Y N N 23.600 41.544 11.631 1.535 -2.791 -0.179 C08 9JD 19 9JD C09 C17 C 0 1 Y N N 22.991 40.901 13.979 0.758 -1.209 1.586 C09 9JD 20 9JD F11 F1 F 0 1 N N N 20.691 40.510 13.749 1.023 -3.048 3.072 F11 9JD 21 9JD O17 O3 O 0 1 N N N 26.424 41.275 15.380 0.495 -0.342 -0.953 O17 9JD 22 9JD C20 C18 C 0 1 N N N 24.999 44.919 12.749 3.995 2.089 -0.773 C20 9JD 23 9JD C22 C19 C 0 1 N N N 26.907 46.420 12.977 6.406 2.145 -1.120 C22 9JD 24 9JD C25 C20 C 0 1 N N N 28.906 47.615 13.341 8.752 2.371 -1.493 C25 9JD 25 9JD C26 C21 C 0 1 N N R 26.018 39.982 13.572 -0.894 1.395 -0.009 C26 9JD 26 9JD C28 C22 C 0 1 N N N 25.999 38.739 14.467 -0.904 2.550 0.996 C28 9JD 27 9JD C29 C23 C 0 1 N N N 26.535 37.504 13.742 -2.267 3.245 0.964 C29 9JD 28 9JD C30 C24 C 0 1 N N N 27.870 37.797 13.083 -3.355 2.245 1.366 C30 9JD 29 9JD N31 N2 N 0 1 N N N 27.795 39.023 12.281 -3.259 1.066 0.495 N31 9JD 30 9JD C32 C25 C 0 1 N N N 27.372 40.158 13.099 -1.967 0.375 0.382 C32 9JD 31 9JD C33 C26 C 0 1 N N N 28.074 39.063 10.958 -4.335 0.626 -0.187 C33 9JD 32 9JD O34 O4 O 0 1 N N N 28.418 38.061 10.351 -4.242 -0.349 -0.902 O34 9JD 33 9JD C35 C27 C 0 1 N N N 27.951 40.388 10.228 -5.653 1.345 -0.061 C35 9JD 34 9JD C36 C28 C 0 1 N N S 28.759 40.401 8.941 -6.700 0.648 -0.931 C36 9JD 35 9JD O38 O5 O 0 1 N N N 30.125 40.659 9.265 -6.334 0.769 -2.306 O38 9JD 36 9JD C39 C29 C 0 1 N N N 28.334 41.592 8.040 -8.066 1.301 -0.707 C39 9JD 37 9JD N40 N3 N 0 1 N N N 27.601 41.214 6.834 -9.092 0.556 -1.449 N40 9JD 38 9JD H1 H1 H 0 1 N N N 20.472 41.072 16.260 1.472 -1.234 4.893 H1 9JD 39 9JD H2 H2 H 0 1 N N N 22.372 41.694 17.715 1.470 1.196 4.507 H2 9JD 40 9JD H3 H3 H 0 1 N N N 24.644 41.817 16.801 1.014 2.093 2.262 H3 9JD 41 9JD H4 H4 H 0 1 N N N 25.792 42.441 12.440 1.330 2.178 -1.340 H4 9JD 42 9JD H5 H5 H 0 1 N N N 26.821 42.994 13.804 1.570 2.539 0.387 H5 9JD 43 9JD H6 H6 H 0 1 N N N 25.045 44.237 14.776 3.144 0.632 0.567 H6 9JD 44 9JD H7 H7 H 0 1 N N N 23.813 43.440 13.741 2.905 0.271 -1.159 H7 9JD 45 9JD H8 H8 H 0 1 N N N 26.977 44.638 12.020 5.376 0.483 -0.629 H8 9JD 46 9JD H9 H9 H 0 1 N N N 23.519 43.819 8.068 3.499 -6.201 -1.737 H9 9JD 47 9JD H10 H10 H 0 1 N N N 22.475 42.362 8.193 2.942 -5.516 -0.191 H10 9JD 48 9JD H11 H11 H 0 1 N N N 22.538 43.541 9.547 1.782 -6.310 -1.283 H11 9JD 49 9JD H12 H12 H 0 1 N N N 24.827 41.823 8.553 3.306 -3.733 -1.876 H12 9JD 50 9JD H13 H13 H 0 1 N N N 24.890 43.002 9.907 2.146 -4.527 -2.967 H13 9JD 51 9JD H14 H14 H 0 1 N N N 23.633 39.742 8.787 -0.227 -4.536 -2.463 H14 9JD 52 9JD H15 H15 H 0 1 N N N 22.859 38.009 10.345 -2.091 -3.390 -1.336 H15 9JD 53 9JD H16 H16 H 0 1 N N N 22.565 38.526 12.729 -1.645 -1.854 0.532 H16 9JD 54 9JD H17 H17 H 0 1 N N N 23.805 42.541 11.991 2.552 -2.626 0.146 H17 9JD 55 9JD H18 H18 H 0 1 N N N 26.270 40.473 15.866 0.322 -0.059 -1.861 H18 9JD 56 9JD H19 H19 H 0 1 N N N 24.460 45.811 13.100 3.771 2.518 -1.750 H19 9JD 57 9JD H20 H20 H 0 1 N N N 24.563 44.577 11.799 4.010 2.879 -0.023 H20 9JD 58 9JD H21 H21 H 0 1 N N N 29.995 47.491 13.249 8.850 3.168 -0.756 H21 9JD 59 9JD H22 H22 H 0 1 N N N 28.578 48.453 12.709 9.656 1.762 -1.491 H22 9JD 60 9JD H23 H23 H 0 1 N N N 28.648 47.824 14.390 8.610 2.807 -2.482 H23 9JD 61 9JD H24 H24 H 0 1 N N N 25.355 39.796 12.714 -1.104 1.780 -1.007 H24 9JD 62 9JD H25 H25 H 0 1 N N N 26.623 38.929 15.353 -0.718 2.161 1.997 H25 9JD 63 9JD H26 H26 H 0 1 N N N 24.963 38.544 14.783 -0.125 3.266 0.734 H26 9JD 64 9JD H27 H27 H 0 1 N N N 25.813 37.198 12.971 -2.265 4.082 1.663 H27 9JD 65 9JD H28 H28 H 0 1 N N N 26.664 36.688 14.468 -2.464 3.613 -0.043 H28 9JD 66 9JD H29 H29 H 0 1 N N N 28.143 36.955 12.430 -3.211 1.946 2.404 H29 9JD 67 9JD H30 H30 H 0 1 N N N 28.637 37.921 13.861 -4.336 2.707 1.252 H30 9JD 68 9JD H31 H31 H 0 1 N N N 28.046 40.249 13.964 -2.032 -0.399 -0.383 H31 9JD 69 9JD H32 H32 H 0 1 N N N 27.425 41.076 12.495 -1.710 -0.078 1.340 H32 9JD 70 9JD H33 H33 H 0 1 N N N 28.315 41.192 10.885 -5.977 1.330 0.980 H33 9JD 71 9JD H34 H34 H 0 1 N N N 26.893 40.564 9.986 -5.536 2.378 -0.390 H34 9JD 72 9JD H35 H35 H 0 1 N N N 28.637 39.452 8.398 -6.753 -0.407 -0.660 H35 9JD 73 9JD H36 H36 H 0 1 N N N 30.456 39.963 9.821 -6.268 1.682 -2.617 H36 9JD 74 9JD H37 H37 H 0 1 N N N 29.243 42.131 7.734 -8.305 1.287 0.356 H37 9JD 75 9JD H38 H38 H 0 1 N N N 27.694 42.260 8.635 -8.038 2.331 -1.060 H38 9JD 76 9JD H39 H39 H 0 1 N N N 27.367 42.036 6.314 -9.094 -0.418 -1.186 H39 9JD 77 9JD H40 H40 H 0 1 N N N 28.171 40.615 6.272 -10.004 0.968 -1.318 H40 9JD 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9JD N40 C39 SING N N 1 9JD C39 C36 SING N N 2 9JD C01 C02 SING N N 3 9JD C36 O38 SING N N 4 9JD C36 C35 SING N N 5 9JD C02 C03 SING N N 6 9JD C04 C03 DOUB Y N 7 9JD C04 C05 SING Y N 8 9JD C35 C33 SING N N 9 9JD C03 C08 SING Y N 10 9JD O34 C33 DOUB N N 11 9JD C05 C06 DOUB Y N 12 9JD C33 N31 SING N N 13 9JD C08 C07 DOUB Y N 14 9JD C06 C07 SING Y N 15 9JD N31 C30 SING N N 16 9JD N31 C32 SING N N 17 9JD N21 C20 SING N N 18 9JD N21 C22 SING N N 19 9JD C07 C09 SING N N 20 9JD C20 C19 SING N N 21 9JD O24 C22 SING N N 22 9JD O24 C25 SING N N 23 9JD C22 O23 DOUB N N 24 9JD C30 C29 SING N N 25 9JD C32 C26 SING N N 26 9JD C18 C19 SING N N 27 9JD C18 C16 SING N N 28 9JD C26 C16 SING N N 29 9JD C26 C28 SING N N 30 9JD C29 C28 SING N N 31 9JD F11 C10 SING N N 32 9JD C09 C10 DOUB Y N 33 9JD C09 C15 SING Y N 34 9JD C16 C15 SING N N 35 9JD C16 O17 SING N N 36 9JD C10 C12 SING Y N 37 9JD C15 C14 DOUB Y N 38 9JD C12 C13 DOUB Y N 39 9JD C14 C13 SING Y N 40 9JD C12 H1 SING N N 41 9JD C13 H2 SING N N 42 9JD C14 H3 SING N N 43 9JD C18 H4 SING N N 44 9JD C18 H5 SING N N 45 9JD C19 H6 SING N N 46 9JD C19 H7 SING N N 47 9JD N21 H8 SING N N 48 9JD C01 H9 SING N N 49 9JD C01 H10 SING N N 50 9JD C01 H11 SING N N 51 9JD C02 H12 SING N N 52 9JD C02 H13 SING N N 53 9JD C04 H14 SING N N 54 9JD C05 H15 SING N N 55 9JD C06 H16 SING N N 56 9JD C08 H17 SING N N 57 9JD O17 H18 SING N N 58 9JD C20 H19 SING N N 59 9JD C20 H20 SING N N 60 9JD C25 H21 SING N N 61 9JD C25 H22 SING N N 62 9JD C25 H23 SING N N 63 9JD C26 H24 SING N N 64 9JD C28 H25 SING N N 65 9JD C28 H26 SING N N 66 9JD C29 H27 SING N N 67 9JD C29 H28 SING N N 68 9JD C30 H29 SING N N 69 9JD C30 H30 SING N N 70 9JD C32 H31 SING N N 71 9JD C32 H32 SING N N 72 9JD C35 H33 SING N N 73 9JD C35 H34 SING N N 74 9JD C36 H35 SING N N 75 9JD O38 H36 SING N N 76 9JD C39 H37 SING N N 77 9JD C39 H38 SING N N 78 9JD N40 H39 SING N N 79 9JD N40 H40 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9JD SMILES ACDLabs 12.01 "c2(cccc(C(O)(CCCNC(=O)OC)C1CCCN(C1)C(=O)CC(O)CN)c2c3cccc(CC)c3)F" 9JD InChI InChI 1.03 "InChI=1S/C29H40FN3O5/c1-3-20-8-4-9-21(16-20)27-24(11-5-12-25(27)30)29(37,13-7-14-32-28(36)38-2)22-10-6-15-33(19-22)26(35)17-23(34)18-31/h4-5,8-9,11-12,16,22-23,34,37H,3,6-7,10,13-15,17-19,31H2,1-2H3,(H,32,36)/t22-,23+,29+/m1/s1" 9JD InChIKey InChI 1.03 IIIBTAZKWKWKNG-AFKLWXAFSA-N 9JD SMILES_CANONICAL CACTVS 3.385 "CCc1cccc(c1)c2c(F)cccc2[C@](O)(CCCNC(=O)OC)[C@@H]3CCCN(C3)C(=O)C[C@H](O)CN" 9JD SMILES CACTVS 3.385 "CCc1cccc(c1)c2c(F)cccc2[C](O)(CCCNC(=O)OC)[CH]3CCCN(C3)C(=O)C[CH](O)CN" 9JD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCc1cccc(c1)c2c(cccc2F)[C@](CCCNC(=O)OC)([C@@H]3CCCN(C3)C(=O)C[C@@H](CN)O)O" 9JD SMILES "OpenEye OEToolkits" 2.0.6 "CCc1cccc(c1)c2c(cccc2F)C(CCCNC(=O)OC)(C3CCCN(C3)C(=O)CC(CN)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9JD "SYSTEMATIC NAME" ACDLabs 12.01 ;methyl [(4S)-4-{(3R)-1-[(3S)-4-amino-3-hydroxybutanoyl]piperidin-3-yl}-4-(3'-ethyl-6-fluoro[1,1'-biphenyl]-2-yl)-4-hydroxybutyl]carbamate ; 9JD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "methyl ~{N}-[(4~{S})-4-[(3~{R})-1-[(3~{S})-4-azanyl-3-oxidanyl-butanoyl]piperidin-3-yl]-4-[2-(3-ethylphenyl)-3-fluoranyl-phenyl]-4-oxidanyl-butyl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9JD "Create component" 2017-05-15 RCSB 9JD "Initial release" 2017-10-18 RCSB #