data_9K4
#
_chem_comp.id 9K4
_chem_comp.name "2-{4-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]piperazin-1-yl}-N-(22-oxo-3,6,9,12,15,18-hexaoxa-21-azatricosan-1-yl)acetamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H52 F3 N5 O9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-05-17
_chem_comp.pdbx_modified_date 2018-05-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 707.779
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9K4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5VTA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9K4 C10 C1 C 0 1 N N R -41.641 37.289 32.006 10.447 -0.853 -0.030 C10 9K4 1
9K4 C13 C2 C 0 1 N N N -41.720 39.821 31.503 8.135 -0.840 -0.926 C13 9K4 2
9K4 C15 C3 C 0 1 N N N -42.443 42.110 30.568 5.963 -0.861 -2.066 C15 9K4 3
9K4 C21 C4 C 0 1 N N N -42.314 42.432 23.306 0.351 1.866 1.673 C21 9K4 4
9K4 C22 C5 C 0 1 N N N -42.711 41.306 22.259 -0.758 2.919 1.627 C22 9K4 5
9K4 C24 C6 C 0 1 N N N -42.684 40.887 19.863 -2.671 3.610 0.358 C24 9K4 6
9K4 C28 C7 C 0 1 N N N -43.055 38.320 16.176 -5.538 0.196 -1.483 C28 9K4 7
9K4 F01 F1 F 0 1 N N N -44.814 34.488 35.415 15.577 -2.889 0.702 F01 9K4 8
9K4 C02 C8 C 0 1 Y N N -44.597 34.597 34.064 14.844 -1.758 0.606 C02 9K4 9
9K4 C03 C9 C 0 1 Y N N -44.930 33.559 33.144 15.434 -0.585 0.162 C03 9K4 10
9K4 F04 F2 F 0 1 N N N -45.508 32.384 33.581 16.743 -0.571 -0.174 F04 9K4 11
9K4 C05 C10 C 0 1 Y N N -44.691 33.712 31.778 14.682 0.573 0.064 C05 9K4 12
9K4 C06 C11 C 0 1 Y N N -44.115 34.896 31.297 13.341 0.557 0.408 C06 9K4 13
9K4 F07 F3 F 0 1 N N N -43.893 35.047 29.950 12.606 1.687 0.312 F07 9K4 14
9K4 C08 C12 C 0 1 Y N N -43.783 35.923 32.216 12.753 -0.615 0.851 C08 9K4 15
9K4 C09 C13 C 0 1 N N N -43.136 37.278 31.752 11.293 -0.631 1.225 C09 9K4 16
9K4 N11 N1 N 0 1 N N N -41.129 36.039 31.473 10.722 -2.188 -0.577 N11 9K4 17
9K4 C12 C14 C 0 1 N N N -40.953 38.509 31.321 8.964 -0.744 0.329 C12 9K4 18
9K4 N14 N2 N 0 1 N N N -41.736 40.876 30.446 6.791 -0.769 -0.853 N14 9K4 19
9K4 C16 C15 C 0 1 N N N -43.401 42.347 29.397 4.987 0.320 -2.084 C16 9K4 20
9K4 N17 N3 N 0 1 N N N -42.726 42.277 28.151 4.237 0.351 -0.821 N17 9K4 21
9K4 C18 C16 C 0 1 N N N -43.437 42.609 27.152 3.172 1.361 -0.865 C18 9K4 22
9K4 C19 C17 C 0 1 N N N -42.590 42.826 25.877 2.276 1.200 0.336 C19 9K4 23
9K4 N20 N4 N 0 1 N N N -43.067 42.278 24.581 1.222 2.023 0.506 N20 9K4 24
9K4 O23 O1 O 0 1 N N N -42.033 41.498 21.003 -1.596 2.678 0.495 O23 9K4 25
9K4 C25 C18 C 0 1 N N N -41.733 40.858 18.632 -3.497 3.258 -0.881 C25 9K4 26
9K4 O26 O2 O 0 1 N N N -42.450 40.258 17.542 -4.122 1.987 -0.691 O26 9K4 27
9K4 C27 C19 C 0 1 N N N -41.940 39.024 17.014 -4.922 1.561 -1.795 C27 9K4 28
9K4 O29 O3 O 0 1 N N N -42.815 38.519 14.770 -6.445 0.322 -0.386 O29 9K4 29
9K4 C30 C20 C 0 1 N N N -43.971 38.656 13.934 -7.078 -0.903 -0.012 C30 9K4 30
9K4 C31 C21 C 0 1 N N N -43.541 38.498 12.433 -8.021 -0.650 1.166 C31 9K4 31
9K4 O32 O4 O 0 1 N N N -42.723 39.588 12.058 -9.082 0.212 0.750 O32 9K4 32
9K4 C33 C22 C 0 1 N N N -42.002 39.483 10.814 -10.025 0.513 1.781 C33 9K4 33
9K4 C34 C23 C 0 1 N N N -42.913 39.845 9.610 -11.110 1.438 1.226 C34 9K4 34
9K4 O35 O5 O 0 1 N N N -42.688 38.920 8.548 -11.856 0.748 0.221 O35 9K4 35
9K4 C36 C24 C 0 1 N N N -43.457 39.131 7.343 -12.900 1.528 -0.365 C36 9K4 36
9K4 C37 C25 C 0 1 N N N -43.044 38.106 6.248 -13.628 0.693 -1.421 C37 9K4 37
9K4 O38 O6 O 0 1 N N N -43.894 38.277 5.108 -14.286 -0.406 -0.788 O38 9K4 38
9K4 C39 C26 C 0 1 N N N -44.878 37.277 4.782 -15.000 -1.254 -1.691 C39 9K4 39
9K4 C40 C27 C 0 1 N N N -46.280 37.934 4.585 -15.661 -2.390 -0.908 C40 9K4 40
9K4 N41 N5 N 0 1 N N N -47.331 37.259 5.379 -16.678 -1.837 -0.010 N41 9K4 41
9K4 C42 C28 C 0 1 N N N -48.785 37.532 5.212 -17.394 -2.658 0.783 C42 9K4 42
9K4 C43 C29 C 0 1 N N N -49.800 36.779 6.070 -18.440 -2.089 1.708 C43 9K4 43
9K4 O45 O7 O 0 1 N N N -49.160 38.327 4.423 -17.198 -3.854 0.753 O45 9K4 44
9K4 O46 O8 O 0 1 N N N -41.553 43.412 25.977 2.502 0.329 1.148 O46 9K4 45
9K4 C47 C30 C 0 1 N N N -42.054 41.044 28.022 5.130 0.577 0.324 C47 9K4 46
9K4 C48 C31 C 0 1 N N N -41.073 40.846 29.167 6.113 -0.599 0.441 C48 9K4 47
9K4 O49 O9 O 0 1 N N N -42.329 40.009 32.511 8.677 -0.982 -2.002 O49 9K4 48
9K4 C50 C32 C 0 1 Y N N -44.021 35.776 33.573 13.502 -1.773 0.945 C50 9K4 49
9K4 H1 H1 H 0 1 N N N -41.457 37.343 33.089 10.697 -0.097 -0.775 H1 9K4 50
9K4 H2 H2 H 0 1 N N N -41.715 42.934 30.602 6.601 -0.822 -2.948 H2 9K4 51
9K4 H3 H3 H 0 1 N N N -43.023 42.095 31.503 5.405 -1.797 -2.058 H3 9K4 52
9K4 H4 H4 H 0 1 N N N -41.237 42.362 23.516 0.937 1.995 2.584 H4 9K4 53
9K4 H5 H5 H 0 1 N N N -42.540 43.418 22.874 -0.092 0.870 1.665 H5 9K4 54
9K4 H6 H6 H 0 1 N N N -43.797 41.341 22.089 -1.353 2.860 2.538 H6 9K4 55
9K4 H7 H7 H 0 1 N N N -42.436 40.323 22.668 -0.315 3.911 1.546 H7 9K4 56
9K4 H8 H8 H 0 1 N N N -43.584 41.466 19.609 -3.305 3.566 1.243 H8 9K4 57
9K4 H9 H9 H 0 1 N N N -42.971 39.857 20.121 -2.267 4.617 0.251 H9 9K4 58
9K4 H10 H10 H 0 1 N N N -44.034 38.745 16.442 -6.075 -0.169 -2.358 H10 9K4 59
9K4 H11 H11 H 0 1 N N N -43.051 37.242 16.397 -4.748 -0.508 -1.222 H11 9K4 60
9K4 H12 H12 H 0 1 N N N -44.950 32.919 31.092 15.141 1.487 -0.281 H12 9K4 61
9K4 H13 H13 H 0 1 N N N -43.600 38.106 32.308 11.025 0.322 1.680 H13 9K4 62
9K4 H14 H14 H 0 1 N N N -43.318 37.412 30.675 11.108 -1.437 1.935 H14 9K4 63
9K4 H15 H15 H 0 1 N N N -41.583 35.272 31.926 10.499 -2.907 0.095 H15 9K4 64
9K4 H16 H16 H 0 1 N N N -41.307 35.998 30.490 10.224 -2.335 -1.442 H16 9K4 65
9K4 H18 H18 H 0 1 N N N -40.868 38.302 30.244 8.693 -1.555 1.005 H18 9K4 66
9K4 H19 H19 H 0 1 N N N -39.948 38.630 31.752 8.777 0.213 0.815 H19 9K4 67
9K4 H20 H20 H 0 1 N N N -43.855 43.344 29.502 5.543 1.250 -2.199 H20 9K4 68
9K4 H21 H21 H 0 1 N N N -44.190 41.581 29.420 4.293 0.206 -2.916 H21 9K4 69
9K4 H23 H23 H 0 1 N N N -43.966 43.544 27.389 3.615 2.357 -0.857 H23 9K4 70
9K4 H24 H24 H 0 1 N N N -44.170 41.812 26.959 2.586 1.232 -1.776 H24 9K4 71
9K4 H25 H25 H 0 1 N N N -43.935 41.782 24.564 1.041 2.720 -0.144 H25 9K4 72
9K4 H26 H26 H 0 1 N N N -40.837 40.263 18.864 -4.262 4.019 -1.036 H26 9K4 73
9K4 H27 H27 H 0 1 N N N -41.434 41.882 18.365 -2.845 3.215 -1.753 H27 9K4 74
9K4 H28 H28 H 0 1 N N N -41.634 38.368 17.843 -4.299 1.484 -2.687 H28 9K4 75
9K4 H29 H29 H 0 1 N N N -41.072 39.231 16.370 -5.716 2.287 -1.969 H29 9K4 76
9K4 H30 H30 H 0 1 N N N -44.420 39.649 14.086 -7.647 -1.291 -0.856 H30 9K4 77
9K4 H31 H31 H 0 1 N N N -44.705 37.878 14.191 -6.320 -1.630 0.280 H31 9K4 78
9K4 H32 H32 H 0 1 N N N -44.437 38.476 11.796 -8.437 -1.598 1.509 H32 9K4 79
9K4 H33 H33 H 0 1 N N N -42.980 37.560 12.309 -7.469 -0.180 1.980 H33 9K4 80
9K4 H34 H34 H 0 1 N N N -41.640 38.451 10.694 -10.482 -0.410 2.137 H34 9K4 81
9K4 H35 H35 H 0 1 N N N -41.145 40.172 10.836 -9.514 1.008 2.608 H35 9K4 82
9K4 H36 H36 H 0 1 N N N -42.678 40.863 9.266 -11.778 1.739 2.033 H36 9K4 83
9K4 H37 H37 H 0 1 N N N -43.967 39.797 9.921 -10.645 2.323 0.790 H37 9K4 84
9K4 H38 H38 H 0 1 N N N -43.276 40.150 6.972 -13.606 1.830 0.408 H38 9K4 85
9K4 H39 H39 H 0 1 N N N -44.526 39.008 7.570 -12.473 2.414 -0.834 H39 9K4 86
9K4 H40 H40 H 0 1 N N N -43.152 37.084 6.639 -14.365 1.314 -1.930 H40 9K4 87
9K4 H41 H41 H 0 1 N N N -41.997 38.278 5.957 -12.907 0.316 -2.147 H41 9K4 88
9K4 H42 H42 H 0 1 N N N -44.934 36.544 5.600 -15.766 -0.673 -2.206 H42 9K4 89
9K4 H43 H43 H 0 1 N N N -44.583 36.768 3.853 -14.308 -1.671 -2.422 H43 9K4 90
9K4 H44 H44 H 0 1 N N N -46.224 38.988 4.895 -16.131 -3.085 -1.604 H44 9K4 91
9K4 H45 H45 H 0 1 N N N -46.550 37.879 3.520 -14.907 -2.916 -0.323 H45 9K4 92
9K4 H46 H46 H 0 1 N N N -47.050 36.585 6.062 -16.835 -0.880 0.014 H46 9K4 93
9K4 H47 H47 H 0 1 N N N -50.817 37.110 5.811 -18.473 -1.005 1.596 H47 9K4 94
9K4 H48 H48 H 0 1 N N N -49.708 35.699 5.884 -19.414 -2.510 1.457 H48 9K4 95
9K4 H49 H49 H 0 1 N N N -49.607 36.986 7.133 -18.190 -2.341 2.738 H49 9K4 96
9K4 H50 H50 H 0 1 N N N -42.791 40.228 28.033 5.684 1.504 0.175 H50 9K4 97
9K4 H51 H51 H 0 1 N N N -41.505 41.030 27.069 4.539 0.649 1.237 H51 9K4 98
9K4 H52 H52 H 0 1 N N N -40.575 39.873 29.046 5.568 -1.508 0.693 H52 9K4 99
9K4 H53 H53 H 0 1 N N N -40.321 41.649 29.136 6.850 -0.384 1.215 H53 9K4 100
9K4 H54 H54 H 0 1 N N N -43.762 36.573 34.254 13.042 -2.687 1.290 H54 9K4 101
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9K4 O45 C42 DOUB N N 1
9K4 C40 C39 SING N N 2
9K4 C40 N41 SING N N 3
9K4 C39 O38 SING N N 4
9K4 O38 C37 SING N N 5
9K4 C42 N41 SING N N 6
9K4 C42 C43 SING N N 7
9K4 C37 C36 SING N N 8
9K4 C36 O35 SING N N 9
9K4 O35 C34 SING N N 10
9K4 C34 C33 SING N N 11
9K4 C33 O32 SING N N 12
9K4 O32 C31 SING N N 13
9K4 C31 C30 SING N N 14
9K4 C30 O29 SING N N 15
9K4 O29 C28 SING N N 16
9K4 C28 C27 SING N N 17
9K4 C27 O26 SING N N 18
9K4 O26 C25 SING N N 19
9K4 C25 C24 SING N N 20
9K4 C24 O23 SING N N 21
9K4 O23 C22 SING N N 22
9K4 C22 C21 SING N N 23
9K4 C21 N20 SING N N 24
9K4 N20 C19 SING N N 25
9K4 C19 O46 DOUB N N 26
9K4 C19 C18 SING N N 27
9K4 C18 N17 SING N N 28
9K4 C47 N17 SING N N 29
9K4 C47 C48 SING N N 30
9K4 N17 C16 SING N N 31
9K4 C48 N14 SING N N 32
9K4 C16 C15 SING N N 33
9K4 F07 C06 SING N N 34
9K4 N14 C15 SING N N 35
9K4 N14 C13 SING N N 36
9K4 C06 C05 DOUB Y N 37
9K4 C06 C08 SING Y N 38
9K4 C12 C13 SING N N 39
9K4 C12 C10 SING N N 40
9K4 N11 C10 SING N N 41
9K4 C13 O49 DOUB N N 42
9K4 C09 C10 SING N N 43
9K4 C09 C08 SING N N 44
9K4 C05 C03 SING Y N 45
9K4 C08 C50 DOUB Y N 46
9K4 C03 F04 SING N N 47
9K4 C03 C02 DOUB Y N 48
9K4 C50 C02 SING Y N 49
9K4 C02 F01 SING N N 50
9K4 C10 H1 SING N N 51
9K4 C15 H2 SING N N 52
9K4 C15 H3 SING N N 53
9K4 C21 H4 SING N N 54
9K4 C21 H5 SING N N 55
9K4 C22 H6 SING N N 56
9K4 C22 H7 SING N N 57
9K4 C24 H8 SING N N 58
9K4 C24 H9 SING N N 59
9K4 C28 H10 SING N N 60
9K4 C28 H11 SING N N 61
9K4 C05 H12 SING N N 62
9K4 C09 H13 SING N N 63
9K4 C09 H14 SING N N 64
9K4 N11 H15 SING N N 65
9K4 N11 H16 SING N N 66
9K4 C12 H18 SING N N 67
9K4 C12 H19 SING N N 68
9K4 C16 H20 SING N N 69
9K4 C16 H21 SING N N 70
9K4 C18 H23 SING N N 71
9K4 C18 H24 SING N N 72
9K4 N20 H25 SING N N 73
9K4 C25 H26 SING N N 74
9K4 C25 H27 SING N N 75
9K4 C27 H28 SING N N 76
9K4 C27 H29 SING N N 77
9K4 C30 H30 SING N N 78
9K4 C30 H31 SING N N 79
9K4 C31 H32 SING N N 80
9K4 C31 H33 SING N N 81
9K4 C33 H34 SING N N 82
9K4 C33 H35 SING N N 83
9K4 C34 H36 SING N N 84
9K4 C34 H37 SING N N 85
9K4 C36 H38 SING N N 86
9K4 C36 H39 SING N N 87
9K4 C37 H40 SING N N 88
9K4 C37 H41 SING N N 89
9K4 C39 H42 SING N N 90
9K4 C39 H43 SING N N 91
9K4 C40 H44 SING N N 92
9K4 C40 H45 SING N N 93
9K4 N41 H46 SING N N 94
9K4 C43 H47 SING N N 95
9K4 C43 H48 SING N N 96
9K4 C43 H49 SING N N 97
9K4 C47 H50 SING N N 98
9K4 C47 H51 SING N N 99
9K4 C48 H52 SING N N 100
9K4 C48 H53 SING N N 101
9K4 C50 H54 SING N N 102
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9K4 SMILES ACDLabs 12.01 "C(Cc1c(cc(c(F)c1)F)F)(N)CC(=O)N2CCN(CC(=O)NCCOCCOCCOCCOCCOCCOCCNC(C)=O)CC2"
9K4 InChI InChI 1.03
"InChI=1S/C32H52F3N5O9/c1-25(41)37-2-8-44-10-12-46-14-16-48-18-19-49-17-15-47-13-11-45-9-3-38-31(42)24-39-4-6-40(7-5-39)32(43)22-27(36)20-26-21-29(34)30(35)23-28(26)33/h21,23,27H,2-20,22,24,36H2,1H3,(H,37,41)(H,38,42)/t27-/m1/s1"
9K4 InChIKey InChI 1.03 UFCDLSMAWGWQEO-HHHXNRCGSA-N
9K4 SMILES_CANONICAL CACTVS 3.385 "CC(=O)NCCOCCOCCOCCOCCOCCOCCNC(=O)CN1CCN(CC1)C(=O)C[C@H](N)Cc2cc(F)c(F)cc2F"
9K4 SMILES CACTVS 3.385 "CC(=O)NCCOCCOCCOCCOCCOCCOCCNC(=O)CN1CCN(CC1)C(=O)C[CH](N)Cc2cc(F)c(F)cc2F"
9K4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)NCCOCCOCCOCCOCCOCCOCCNC(=O)CN1CCN(CC1)C(=O)C[C@@H](Cc2cc(c(cc2F)F)F)N"
9K4 SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)NCCOCCOCCOCCOCCOCCOCCNC(=O)CN1CCN(CC1)C(=O)CC(Cc2cc(c(cc2F)F)F)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9K4 "SYSTEMATIC NAME" ACDLabs 12.01 "2-{4-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butanoyl]piperazin-1-yl}-N-(22-oxo-3,6,9,12,15,18-hexaoxa-21-azatricosan-1-yl)acetamide"
9K4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[2-[2-[2-[2-[2-[2-(2-acetamidoethoxy)ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethyl]-2-[4-[(3~{R})-3-azanyl-4-[2,4,5-tris(fluoranyl)phenyl]butanoyl]piperazin-1-yl]ethanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9K4 "Create component" 2017-05-17 RCSB
9K4 "Initial release" 2018-05-09 RCSB
#