data_9KK
#
_chem_comp.id 9KK
_chem_comp.name "N-methyl norleucine"
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C7 H15 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-05-30
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 145.199
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9KK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5O45
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9KK N N1 N 0 1 N N N Y Y N 22.767 5.599 -18.053 0.728 1.422 -0.376 N 9KK 1
9KK CE CE C 0 1 N N N N N N 19.799 0.931 -19.022 -4.354 0.120 0.093 CE 9KK 2
9KK CD CD C 0 1 N N N N N N 20.099 2.158 -19.812 -3.087 -0.636 -0.312 CD 9KK 3
9KK CG CG C 0 1 N N N N N N 21.331 2.963 -19.191 -1.858 0.120 0.197 CG 9KK 4
9KK CB C4 C 0 1 N N N N N N 21.475 4.386 -19.790 -0.590 -0.635 -0.208 CB 9KK 5
9KK CA CA C 0 1 N N S Y N N 22.714 5.247 -19.480 0.639 0.121 0.301 CA 9KK 6
9KK CM CM C 0 1 N N N N N N 21.906 6.694 -17.623 1.472 2.390 0.442 CM 9KK 7
9KK C C C 0 1 N N N Y N Y 22.711 6.490 -20.341 1.879 -0.683 0.009 C 9KK 8
9KK O O O 0 1 N N N Y N Y 21.731 6.766 -21.036 2.749 -0.220 -0.690 O 9KK 9
9KK OXT OXT O 0 1 N Y N Y N Y 23.836 7.225 -20.382 2.018 -1.914 0.527 OXT 9KK 10
9KK H H1 H 0 1 N Y N Y Y N 22.510 4.787 -17.530 1.144 1.326 -1.290 H 9KK 11
9KK HE3 H3 H 0 1 N N N N N N 18.948 0.401 -19.475 -5.229 -0.419 -0.269 HE3 9KK 12
9KK HE2 H4 H 0 1 N N N N N N 20.680 0.273 -19.018 -4.399 0.197 1.180 HE2 9KK 13
9KK HE1 H5 H 0 1 N N N N N N 19.547 1.213 -17.989 -4.336 1.119 -0.341 HE1 9KK 14
9KK HD2 H6 H 0 1 N N N N N N 19.212 2.808 -19.815 -3.104 -1.635 0.123 HD2 9KK 15
9KK HD3 H7 H 0 1 N N N N N N 20.345 1.868 -20.844 -3.042 -0.713 -1.398 HD3 9KK 16
9KK HG2 H8 H 0 1 N N N N N N 21.183 3.051 -18.105 -1.840 1.120 -0.238 HG2 9KK 17
9KK HG3 H9 H 0 1 N N N N N N 22.256 2.401 -19.390 -1.903 0.197 1.283 HG3 9KK 18
9KK HB2 H10 H 0 1 N N N N N N 20.600 4.960 -19.450 -0.608 -1.634 0.226 HB2 9KK 19
9KK HB3 H11 H 0 1 N N N N N N 21.437 4.272 -20.883 -0.545 -0.712 -1.295 HB3 9KK 20
9KK HA H12 H 0 1 N N N Y N N 23.607 4.656 -19.732 0.550 0.276 1.376 HA 9KK 21
9KK HM1 H13 H 0 1 N N N N N N 22.035 6.860 -16.543 1.523 3.344 -0.082 HM1 9KK 22
9KK HM3 H14 H 0 1 N N N N N N 22.177 7.609 -18.170 0.963 2.526 1.396 HM3 9KK 23
9KK HM2 H15 H 0 1 N N N N N N 20.857 6.439 -17.832 2.481 2.018 0.618 HM2 9KK 24
9KK HXT H16 H 0 1 N Y N Y N Y 23.728 7.937 -21.002 2.831 -2.391 0.312 HXT 9KK 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9KK O C DOUB N N 1
9KK C CA SING N N 2
9KK CD CG SING N N 3
9KK CD CE SING N N 4
9KK CB CA SING N N 5
9KK CB CG SING N N 6
9KK CA N SING N N 7
9KK N CM SING N N 8
9KK C OXT SING N N 9
9KK N H SING N N 10
9KK CE HE3 SING N N 11
9KK CE HE2 SING N N 12
9KK CE HE1 SING N N 13
9KK CD HD2 SING N N 14
9KK CD HD3 SING N N 15
9KK CG HG2 SING N N 16
9KK CG HG3 SING N N 17
9KK CB HB2 SING N N 18
9KK CB HB3 SING N N 19
9KK CA HA SING N N 20
9KK CM HM1 SING N N 21
9KK CM HM3 SING N N 22
9KK CM HM2 SING N N 23
9KK OXT HXT SING N N 24
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9KK InChI InChI 1.03 "InChI=1S/C7H15NO2/c1-3-4-5-6(8-2)7(9)10/h6,8H,3-5H2,1-2H3,(H,9,10)/t6-/m0/s1"
9KK InChIKey InChI 1.03 FPDYKABXINADKS-LURJTMIESA-N
9KK SMILES_CANONICAL CACTVS 3.385 "CCCC[C@H](NC)C(O)=O"
9KK SMILES CACTVS 3.385 "CCCC[CH](NC)C(O)=O"
9KK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCC[C@@H](C(=O)O)NC"
9KK SMILES "OpenEye OEToolkits" 2.0.6 "CCCCC(C(=O)O)NC"
#
_pdbx_chem_comp_identifier.comp_id 9KK
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-(methylamino)hexanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9KK "Create component" 2017-05-30 EBI
9KK "Other modification" 2017-05-31 EBI
9KK "Initial release" 2017-09-20 RCSB
9KK "Modify backbone" 2023-11-03 PDBE
9KK "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 9KK LEU Norleucine "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ?
2 9KK LEU Methylation "Named protein modification" "Amino-acid backbone" "Any position" ? ? ? ?
#