data_9LS # _chem_comp.id 9LS _chem_comp.name "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexyl-N-(2-fluorophenyl)acetamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H23 Cl F3 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-05-19 _chem_comp.pdbx_modified_date 2017-06-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 497.939 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9LS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5Q0V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9LS N1 N1 N 0 1 Y N N 22.976 18.013 3.714 1.139 0.749 -0.204 N1 9LS 1 9LS N3 N2 N 0 1 Y N N 22.732 16.415 2.153 1.537 2.815 0.412 N3 9LS 2 9LS C4 C1 C 0 1 Y N N 24.223 17.426 3.571 2.462 0.806 0.192 C4 9LS 3 9LS C5 C2 C 0 1 Y N N 24.061 16.435 2.604 2.698 2.136 0.583 C5 9LS 4 9LS C6 C3 C 0 1 N N N 23.314 20.431 4.197 -0.663 -0.804 0.274 C6 9LS 5 9LS C7 C4 C 0 1 N N S 22.585 19.140 4.627 0.429 -0.434 -0.696 C7 9LS 6 9LS C8 C5 C 0 1 Y N N 25.431 17.679 4.207 3.485 -0.129 0.262 C8 9LS 7 9LS C10 C6 C 0 1 Y N N 25.165 15.650 2.239 3.968 2.506 1.036 C10 9LS 8 9LS C13 C7 C 0 1 Y N N 26.367 15.912 2.877 4.972 1.565 1.100 C13 9LS 9 9LS C17 C8 C 0 1 N N N 22.722 18.784 6.125 1.410 -1.600 -0.829 C17 9LS 10 9LS C22 C9 C 0 1 Y N N 18.053 18.512 2.377 -3.390 3.109 -0.933 C22 9LS 11 9LS C24 C10 C 0 1 Y N N 18.363 17.502 3.274 -2.621 3.910 -0.104 C24 9LS 12 9LS C28 C11 C 0 1 Y N N 26.027 22.510 1.028 -4.429 -3.468 1.492 C28 9LS 13 9LS F23 F1 F 0 1 N N N 26.074 20.352 2.006 -3.085 -4.043 -0.371 F23 9LS 14 9LS C16 C12 C 0 1 Y N N 25.387 21.505 1.722 -3.380 -3.191 0.635 C16 9LS 15 9LS C32 C13 C 0 1 Y N N 25.316 23.670 0.750 -4.735 -2.593 2.518 C32 9LS 16 9LS C31 C14 C 0 1 Y N N 24.001 23.803 1.162 -3.993 -1.440 2.691 C31 9LS 17 9LS C27 C15 C 0 1 Y N N 23.373 22.779 1.863 -2.943 -1.156 1.839 C27 9LS 18 9LS C14 C16 C 0 1 Y N N 24.072 21.601 2.153 -2.629 -2.034 0.811 C14 9LS 19 9LS N9 N3 N 0 1 N N N 23.461 20.545 2.859 -1.565 -1.750 -0.055 N9 9LS 20 9LS O15 O1 O 0 1 N N N 23.714 21.257 5.013 -0.730 -0.251 1.352 O15 9LS 21 9LS C29 C17 C 0 1 N N N 21.933 19.763 7.013 0.642 -2.876 -1.178 C29 9LS 22 9LS C33 C18 C 0 1 N N N 22.016 19.392 8.506 1.624 -4.042 -1.311 C33 9LS 23 9LS C35 C19 C 0 1 N N N 21.538 17.963 8.751 2.634 -3.735 -2.418 C35 9LS 24 9LS C34 C20 C 0 1 N N N 22.325 16.964 7.886 3.402 -2.459 -2.069 C34 9LS 25 9LS C30 C21 C 0 1 N N N 22.245 17.341 6.395 2.420 -1.293 -1.936 C30 9LS 26 9LS C2 C22 C 0 1 Y N N 22.126 17.370 2.844 0.615 2.004 -0.046 C2 9LS 27 9LS F21 F2 F 0 1 N N N 27.449 15.191 2.561 6.200 1.923 1.538 F21 9LS 28 9LS C11 C23 C 0 1 Y N N 26.490 16.904 3.836 4.733 0.250 0.715 C11 9LS 29 9LS F20 F3 F 0 1 N N N 27.691 17.114 4.418 5.728 -0.662 0.783 F20 9LS 30 9LS C12 C24 C 0 1 Y N N 20.702 17.734 2.698 -0.779 2.389 -0.354 C12 9LS 31 9LS C18 C25 C 0 1 Y N N 20.357 18.754 1.808 -1.559 1.587 -1.189 C18 9LS 32 9LS C25 C26 C 0 1 Y N N 19.033 19.143 1.643 -2.858 1.951 -1.474 C25 9LS 33 9LS CL26 CL1 CL 0 0 N N N 16.391 18.997 2.175 -5.029 3.558 -1.289 CL26 9LS 34 9LS C19 C27 C 0 1 Y N N 19.690 17.119 3.434 -1.320 3.556 0.187 C19 9LS 35 9LS H1 H1 H 0 1 N N N 21.514 19.324 4.455 -0.010 -0.215 -1.670 H1 9LS 36 9LS H2 H2 H 0 1 N N N 25.527 18.450 4.957 3.306 -1.151 -0.038 H2 9LS 37 9LS H3 H3 H 0 1 N N N 25.082 14.874 1.492 4.161 3.526 1.334 H3 9LS 38 9LS H4 H4 H 0 1 N N N 23.785 18.851 6.398 1.938 -1.740 0.115 H4 9LS 39 9LS H5 H5 H 0 1 N N N 17.583 17.018 3.842 -3.041 4.812 0.315 H5 9LS 40 9LS H6 H6 H 0 1 N N N 27.053 22.398 0.709 -5.014 -4.367 1.357 H6 9LS 41 9LS H7 H7 H 0 1 N N N 25.792 24.474 0.209 -5.555 -2.812 3.186 H7 9LS 42 9LS H8 H8 H 0 1 N N N 23.458 24.709 0.937 -4.234 -0.758 3.494 H8 9LS 43 9LS H9 H9 H 0 1 N N N 22.348 22.892 2.183 -2.364 -0.255 1.975 H9 9LS 44 9LS H10 H10 H 0 1 N N N 23.095 19.796 2.307 -1.477 -2.234 -0.891 H10 9LS 45 9LS H11 H11 H 0 1 N N N 22.343 20.774 6.876 -0.077 -3.095 -0.389 H11 9LS 46 9LS H12 H12 H 0 1 N N N 20.878 19.750 6.703 0.115 -2.736 -2.122 H12 9LS 47 9LS H13 H13 H 0 1 N N N 23.060 19.483 8.840 2.151 -4.182 -0.367 H13 9LS 48 9LS H14 H14 H 0 1 N N N 21.385 20.084 9.083 1.077 -4.951 -1.559 H14 9LS 49 9LS H15 H15 H 0 1 N N N 20.469 17.893 8.500 3.333 -4.566 -2.513 H15 9LS 50 9LS H16 H16 H 0 1 N N N 21.682 17.712 9.812 2.106 -3.595 -3.362 H16 9LS 51 9LS H17 H17 H 0 1 N N N 21.904 15.958 8.026 3.929 -2.599 -1.125 H17 9LS 52 9LS H18 H18 H 0 1 N N N 23.379 16.967 8.202 4.121 -2.241 -2.858 H18 9LS 53 9LS H19 H19 H 0 1 N N N 21.201 17.246 6.063 1.893 -1.153 -2.880 H19 9LS 54 9LS H20 H20 H 0 1 N N N 22.877 16.647 5.821 2.967 -0.384 -1.688 H20 9LS 55 9LS H21 H21 H 0 1 N N N 21.131 19.248 1.239 -1.145 0.683 -1.611 H21 9LS 56 9LS H22 H22 H 0 1 N N N 18.776 19.929 0.949 -3.463 1.331 -2.119 H22 9LS 57 9LS H23 H23 H 0 1 N N N 19.940 16.337 4.136 -0.721 4.181 0.833 H23 9LS 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9LS C32 C28 DOUB Y N 1 9LS C32 C31 SING Y N 2 9LS C28 C16 SING Y N 3 9LS C31 C27 DOUB Y N 4 9LS C25 C18 DOUB Y N 5 9LS C25 C22 SING Y N 6 9LS C16 F23 SING N N 7 9LS C16 C14 DOUB Y N 8 9LS C18 C12 SING Y N 9 9LS C27 C14 SING Y N 10 9LS C14 N9 SING N N 11 9LS N3 C5 SING Y N 12 9LS N3 C2 DOUB Y N 13 9LS CL26 C22 SING N N 14 9LS C10 C5 DOUB Y N 15 9LS C10 C13 SING Y N 16 9LS C22 C24 DOUB Y N 17 9LS F21 C13 SING N N 18 9LS C5 C4 SING Y N 19 9LS C12 C2 SING N N 20 9LS C12 C19 DOUB Y N 21 9LS C2 N1 SING Y N 22 9LS N9 C6 SING N N 23 9LS C13 C11 DOUB Y N 24 9LS C24 C19 SING Y N 25 9LS C4 N1 SING Y N 26 9LS C4 C8 DOUB Y N 27 9LS N1 C7 SING N N 28 9LS C11 C8 SING Y N 29 9LS C11 F20 SING N N 30 9LS C6 C7 SING N N 31 9LS C6 O15 DOUB N N 32 9LS C7 C17 SING N N 33 9LS C17 C30 SING N N 34 9LS C17 C29 SING N N 35 9LS C30 C34 SING N N 36 9LS C29 C33 SING N N 37 9LS C34 C35 SING N N 38 9LS C33 C35 SING N N 39 9LS C7 H1 SING N N 40 9LS C8 H2 SING N N 41 9LS C10 H3 SING N N 42 9LS C17 H4 SING N N 43 9LS C24 H5 SING N N 44 9LS C28 H6 SING N N 45 9LS C32 H7 SING N N 46 9LS C31 H8 SING N N 47 9LS C27 H9 SING N N 48 9LS N9 H10 SING N N 49 9LS C29 H11 SING N N 50 9LS C29 H12 SING N N 51 9LS C33 H13 SING N N 52 9LS C33 H14 SING N N 53 9LS C35 H15 SING N N 54 9LS C35 H16 SING N N 55 9LS C34 H17 SING N N 56 9LS C34 H18 SING N N 57 9LS C30 H19 SING N N 58 9LS C30 H20 SING N N 59 9LS C18 H21 SING N N 60 9LS C25 H22 SING N N 61 9LS C19 H23 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9LS SMILES ACDLabs 12.01 "n3(C(C(=O)Nc1c(cccc1)F)C2CCCCC2)c5cc(c(cc5nc3c4ccc(cc4)Cl)F)F" 9LS InChI InChI 1.03 "InChI=1S/C27H23ClF3N3O/c28-18-12-10-17(11-13-18)26-32-23-14-20(30)21(31)15-24(23)34(26)25(16-6-2-1-3-7-16)27(35)33-22-9-5-4-8-19(22)29/h4-5,8-16,25H,1-3,6-7H2,(H,33,35)/t25-/m0/s1" 9LS InChIKey InChI 1.03 JBLFHKBJHMUDCM-VWLOTQADSA-N 9LS SMILES_CANONICAL CACTVS 3.385 "Fc1cc2nc(n([C@@H](C3CCCCC3)C(=O)Nc4ccccc4F)c2cc1F)c5ccc(Cl)cc5" 9LS SMILES CACTVS 3.385 "Fc1cc2nc(n([CH](C3CCCCC3)C(=O)Nc4ccccc4F)c2cc1F)c5ccc(Cl)cc5" 9LS SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)NC(=O)[C@H](C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F)F" 9LS SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(c(c1)NC(=O)C(C2CCCCC2)n3c4cc(c(cc4nc3c5ccc(cc5)Cl)F)F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9LS "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-[2-(4-chlorophenyl)-5,6-difluoro-1H-benzimidazol-1-yl]-2-cyclohexyl-N-(2-fluorophenyl)acetamide" 9LS "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-2-[2-(4-chlorophenyl)-5,6-bis(fluoranyl)benzimidazol-1-yl]-2-cyclohexyl-~{N}-(2-fluorophenyl)ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9LS "Create component" 2017-05-19 RCSB 9LS "Initial release" 2017-07-05 RCSB #