data_9M5 # _chem_comp.id 9M5 _chem_comp.name "~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{S})-2-(cyclohexylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]-1~{H}-imidazole-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H33 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-11-19 _chem_comp.pdbx_modified_date 2024-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 459.583 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9M5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QAI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9M5 C02 C1 C 0 1 N N N N N N 21.913 6.120 -24.742 -0.048 -2.560 0.045 C02 9M5 1 9M5 C04 C2 C 0 1 N N S N N N 20.594 5.047 -26.503 0.535 -0.424 -0.972 C04 9M5 2 9M5 C05 C3 C 0 1 N N N N N N 20.650 4.763 -28.020 1.663 -0.082 -0.034 C05 9M5 3 9M5 C07 C4 C 0 1 N N N N N N 22.617 4.067 -29.390 3.758 1.056 0.467 C07 9M5 4 9M5 C08 C5 C 0 1 N N N N N N 23.297 2.744 -29.674 5.004 1.418 -0.344 C08 9M5 5 9M5 C09 C6 C 0 1 N N N N N N 23.333 2.408 -31.162 6.150 1.765 0.609 C09 9M5 6 9M5 C10 C7 C 0 1 N N N N N N 23.921 3.537 -31.970 5.745 2.955 1.481 C10 9M5 7 9M5 C11 C8 C 0 1 N N N N N N 23.187 4.836 -31.721 4.499 2.594 2.292 C11 9M5 8 9M5 C12 C9 C 0 1 N N N N N N 22.092 4.700 -30.660 3.353 2.247 1.339 C12 9M5 9 9M5 C14 C10 C 0 1 Y N N N N N 19.172 5.304 -26.020 -0.169 0.840 -1.394 C14 9M5 10 9M5 C15 C11 C 0 1 Y N N N N N 18.677 6.523 -25.595 -0.173 1.231 -2.724 C15 9M5 11 9M5 C16 C12 C 0 1 Y N N N N N 17.380 6.637 -25.168 -0.834 2.401 -3.066 C16 9M5 12 9M5 C17 C13 C 0 1 Y N N N N N 16.622 5.538 -25.136 -1.461 3.134 -2.076 C17 9M5 13 9M5 C19 C14 C 0 1 Y N N N N N 18.297 4.257 -25.968 -0.822 1.622 -0.460 C19 9M5 14 9M5 C20 C15 C 0 1 Y N N N N N 22.184 6.918 -27.024 -1.703 -0.852 0.007 C20 9M5 15 9M5 C21 C16 C 0 1 Y N N N N N 21.450 7.900 -27.707 -2.665 -0.777 -0.992 C21 9M5 16 9M5 C22 C17 C 0 1 Y N N N N N 22.069 8.734 -28.619 -3.936 -0.327 -0.693 C22 9M5 17 9M5 C23 C18 C 0 1 Y N N N N N 23.424 8.634 -28.894 -4.252 0.049 0.600 C23 9M5 18 9M5 C24 C19 C 0 1 N N N N N N 24.131 9.579 -29.864 -5.639 0.539 0.922 C24 9M5 19 9M5 C25 C20 C 0 1 N N N N N N 23.135 10.544 -30.509 -5.724 0.887 2.410 C25 9M5 20 9M5 C26 C21 C 0 1 N N N N N N 24.868 8.796 -30.951 -5.946 1.785 0.089 C26 9M5 21 9M5 C27 C22 C 0 1 N N N N N N 25.159 10.397 -29.083 -6.656 -0.556 0.596 C27 9M5 22 9M5 C28 C23 C 0 1 Y N N N N N 24.142 7.659 -28.225 -3.297 -0.026 1.597 C28 9M5 23 9M5 C29 C24 C 0 1 Y N N N N N 23.552 6.823 -27.302 -2.025 -0.480 1.306 C29 9M5 24 9M5 C30 C25 C 0 1 Y N N N N N 22.764 7.212 -24.269 1.332 -3.014 -0.198 C30 9M5 25 9M5 C31 C26 C 0 1 Y N N N N N 23.592 7.216 -23.185 1.868 -4.208 0.188 C31 9M5 26 9M5 C33 C27 C 0 1 Y N N N N N 23.658 9.168 -24.150 3.389 -3.034 -0.871 C33 9M5 27 9M5 N03 N1 N 0 1 N N N N N N 21.577 6.044 -26.061 -0.415 -1.308 -0.292 N03 9M5 28 9M5 N06 N2 N 0 1 N N N N N N 21.591 3.881 -28.368 2.661 0.724 -0.445 N06 9M5 29 9M5 N18 N3 N 0 1 Y N N N N N 17.033 4.366 -25.552 -1.435 2.732 -0.821 N18 9M5 30 9M5 N32 N4 N 0 1 Y N N N N N 24.158 8.457 -23.136 3.159 -4.214 -0.237 N32 9M5 31 9M5 N34 N5 N 0 1 Y N N N N N 22.810 8.467 -24.865 2.300 -2.322 -0.852 N34 9M5 32 9M5 O01 O1 O 0 1 N N N N N N 21.513 5.299 -23.943 -0.858 -3.318 0.545 O01 9M5 33 9M5 O13 O2 O 0 1 N N N N N N 19.786 5.175 -28.791 1.673 -0.533 1.092 O13 9M5 34 9M5 H041 H1 H 0 0 N N N N N N 20.893 4.102 -26.026 0.934 -0.928 -1.852 H041 9M5 35 9M5 H071 H2 H 0 0 N N N N N N 23.381 4.744 -28.981 3.975 0.198 1.103 H071 9M5 36 9M5 H081 H3 H 0 0 N N N N N N 22.752 1.948 -29.146 5.293 0.570 -0.965 H081 9M5 37 9M5 H082 H4 H 0 0 N N N N N N 24.330 2.792 -29.299 4.788 2.276 -0.979 H082 9M5 38 9M5 H092 H5 H 0 0 N N N N N N 22.307 2.216 -31.510 6.366 0.906 1.245 H092 9M5 39 9M5 H091 H6 H 0 0 N N N N N N 23.945 1.506 -31.310 7.038 2.023 0.032 H091 9M5 40 9M5 H102 H7 H 0 0 N N N N N N 23.851 3.286 -33.039 6.561 3.203 2.160 H102 9M5 41 9M5 H101 H8 H 0 0 N N N N N N 24.977 3.664 -31.691 5.529 3.814 0.845 H101 9M5 42 9M5 H112 H9 H 0 0 N N N N N N 23.912 5.591 -31.384 4.716 1.735 2.927 H112 9M5 43 9M5 H111 H10 H 0 0 N N N N N N 22.725 5.166 -32.663 4.211 3.442 2.912 H111 9M5 44 9M5 H122 H11 H 0 0 N N N N N N 21.699 5.700 -30.424 3.137 3.105 0.703 H122 9M5 45 9M5 H121 H12 H 0 0 N N N N N N 21.282 4.073 -31.062 2.466 1.989 1.916 H121 9M5 46 9M5 H151 H13 H 0 0 N N N N N N 19.318 7.392 -25.600 0.326 0.638 -3.476 H151 9M5 47 9M5 H161 H14 H 0 0 N N N N N N 16.980 7.593 -24.864 -0.857 2.736 -4.093 H161 9M5 48 9M5 H171 H15 H 0 0 N N N N N N 15.618 5.620 -24.747 -1.977 4.047 -2.334 H171 9M5 49 9M5 H191 H16 H 0 0 N N N N N N 18.648 3.285 -26.281 -0.827 1.322 0.577 H191 9M5 50 9M5 H211 H17 H 0 0 N N N N N N 20.392 8.005 -27.518 -2.419 -1.070 -2.003 H211 9M5 51 9M5 H221 H18 H 0 0 N N N N N N 21.482 9.483 -29.130 -4.684 -0.269 -1.470 H221 9M5 52 9M5 H252 H19 H 0 0 N N N N N N 22.607 11.105 -29.724 -5.506 -0.000 3.003 H252 9M5 53 9M5 H253 H20 H 0 0 N N N N N N 23.675 11.246 -31.162 -5.000 1.668 2.642 H253 9M5 54 9M5 H251 H21 H 0 0 N N N N N N 22.407 9.975 -31.106 -6.728 1.243 2.643 H251 9M5 55 9M5 H261 H22 H 0 0 N N N N N N 25.583 8.103 -30.484 -6.950 2.140 0.322 H261 9M5 56 9M5 H262 H23 H 0 0 N N N N N N 24.142 8.225 -31.548 -5.222 2.566 0.321 H262 9M5 57 9M5 H263 H24 H 0 0 N N N N N N 25.409 9.496 -31.604 -5.886 1.537 -0.971 H263 9M5 58 9M5 H273 H25 H 0 0 N N N N N N 24.650 10.970 -28.294 -6.438 -1.443 1.189 H273 9M5 59 9M5 H271 H26 H 0 0 N N N N N N 25.896 9.720 -28.627 -7.660 -0.201 0.829 H271 9M5 60 9M5 H272 H27 H 0 0 N N N N N N 25.671 11.090 -29.766 -6.596 -0.804 -0.464 H272 9M5 61 9M5 H281 H28 H 0 0 N N N N N N 25.196 7.550 -28.432 -3.546 0.269 2.606 H281 9M5 62 9M5 H291 H29 H 0 0 N N N N N N 24.152 6.087 -26.788 -1.280 -0.538 2.085 H291 9M5 63 9M5 H311 H30 H 0 0 N N N N N N 23.765 6.399 -22.501 1.364 -4.996 0.727 H311 9M5 64 9M5 H331 H31 H 0 0 N N N N N N 23.920 10.195 -24.356 4.325 -2.737 -1.321 H331 9M5 65 9M5 H061 H32 H 0 0 N N N N N N 21.593 3.008 -27.881 2.654 1.084 -1.346 H061 9M5 66 9M5 H1 H33 H 0 1 N N N N N N 24.826 8.776 -22.463 3.800 -4.931 -0.112 H1 9M5 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9M5 C10 C11 SING N N 1 9M5 C10 C09 SING N N 2 9M5 C11 C12 SING N N 3 9M5 C09 C08 SING N N 4 9M5 C26 C24 SING N N 5 9M5 C12 C07 SING N N 6 9M5 C25 C24 SING N N 7 9M5 C24 C27 SING N N 8 9M5 C24 C23 SING N N 9 9M5 C08 C07 SING N N 10 9M5 C07 N06 SING N N 11 9M5 C23 C22 DOUB Y N 12 9M5 C23 C28 SING Y N 13 9M5 O13 C05 DOUB N N 14 9M5 C22 C21 SING Y N 15 9M5 N06 C05 SING N N 16 9M5 C28 C29 DOUB Y N 17 9M5 C05 C04 SING N N 18 9M5 C21 C20 DOUB Y N 19 9M5 C29 C20 SING Y N 20 9M5 C20 N03 SING N N 21 9M5 C04 N03 SING N N 22 9M5 C04 C14 SING N N 23 9M5 N03 C02 SING N N 24 9M5 C14 C19 DOUB Y N 25 9M5 C14 C15 SING Y N 26 9M5 C19 N18 SING Y N 27 9M5 C15 C16 DOUB Y N 28 9M5 N18 C17 DOUB Y N 29 9M5 C16 C17 SING Y N 30 9M5 N34 C30 SING Y N 31 9M5 N34 C33 DOUB Y N 32 9M5 C02 C30 SING N N 33 9M5 C02 O01 DOUB N N 34 9M5 C30 C31 DOUB Y N 35 9M5 C33 N32 SING Y N 36 9M5 C31 N32 SING Y N 37 9M5 C04 H041 SING N N 38 9M5 C07 H071 SING N N 39 9M5 C08 H081 SING N N 40 9M5 C08 H082 SING N N 41 9M5 C09 H092 SING N N 42 9M5 C09 H091 SING N N 43 9M5 C10 H102 SING N N 44 9M5 C10 H101 SING N N 45 9M5 C11 H112 SING N N 46 9M5 C11 H111 SING N N 47 9M5 C12 H122 SING N N 48 9M5 C12 H121 SING N N 49 9M5 C15 H151 SING N N 50 9M5 C16 H161 SING N N 51 9M5 C17 H171 SING N N 52 9M5 C19 H191 SING N N 53 9M5 C21 H211 SING N N 54 9M5 C22 H221 SING N N 55 9M5 C25 H252 SING N N 56 9M5 C25 H253 SING N N 57 9M5 C25 H251 SING N N 58 9M5 C26 H261 SING N N 59 9M5 C26 H262 SING N N 60 9M5 C26 H263 SING N N 61 9M5 C27 H273 SING N N 62 9M5 C27 H271 SING N N 63 9M5 C27 H272 SING N N 64 9M5 C28 H281 SING N N 65 9M5 C29 H291 SING N N 66 9M5 C31 H311 SING N N 67 9M5 C33 H331 SING N N 68 9M5 N06 H061 SING N N 69 9M5 N32 H1 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9M5 InChI InChI 1.06 "InChI=1S/C27H33N5O2/c1-27(2,3)20-11-13-22(14-12-20)32(26(34)23-17-29-18-30-23)24(19-8-7-15-28-16-19)25(33)31-21-9-5-4-6-10-21/h7-8,11-18,21,24H,4-6,9-10H2,1-3H3,(H,29,30)(H,31,33)/t24-/m0/s1" 9M5 InChIKey InChI 1.06 MUNFBYOTGGMQOS-DEOSSOPVSA-N 9M5 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)c1ccc(cc1)N([C@H](C(=O)NC2CCCCC2)c3cccnc3)C(=O)c4c[nH]cn4" 9M5 SMILES CACTVS 3.385 "CC(C)(C)c1ccc(cc1)N([CH](C(=O)NC2CCCCC2)c3cccnc3)C(=O)c4c[nH]cn4" 9M5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1ccc(cc1)N([C@@H](c2cccnc2)C(=O)NC3CCCCC3)C(=O)c4c[nH]cn4" 9M5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(C)c1ccc(cc1)N(C(c2cccnc2)C(=O)NC3CCCCC3)C(=O)c4c[nH]cn4" # _pdbx_chem_comp_identifier.comp_id 9M5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-(4-~{tert}-butylphenyl)-~{N}-[(1~{S})-2-(cyclohexylamino)-2-oxidanylidene-1-pyridin-3-yl-ethyl]-1~{H}-imidazole-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9M5 "Create component" 2021-11-19 PDBE 9M5 "Modify descriptor" 2022-08-22 RCSB 9M5 "Initial release" 2024-05-01 RCSB #