data_9N1 # _chem_comp.id 9N1 _chem_comp.name "(2S)-N,2-dicyclohexyl-2-[2-(2,4-dimethoxyphenyl)-1H-benzimidazol-1-yl]acetamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H37 N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-05-19 _chem_comp.pdbx_modified_date 2017-06-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 475.622 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9N1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5Q19 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9N1 N3 N1 N 0 1 Y N N 13.658 25.973 2.495 1.298 1.132 -2.301 N3 9N1 1 9N1 C4 C1 C 0 1 Y N N 15.717 24.860 3.230 1.932 -0.737 -0.806 C4 9N1 2 9N1 C5 C2 C 0 1 N N N 12.957 22.009 4.662 -1.812 0.163 0.745 C5 9N1 3 9N1 C6 C3 C 0 1 N N S 13.744 23.278 5.020 -0.352 0.521 0.849 C6 9N1 4 9N1 C7 C4 C 0 1 Y N N 12.090 24.879 3.758 -0.354 2.082 -1.157 C7 9N1 5 9N1 C8 C5 C 0 1 Y N N 12.300 25.863 2.798 0.406 2.152 -2.337 C8 9N1 6 9N1 C15 C6 C 0 1 Y N N 18.481 24.442 3.161 3.421 -2.962 -0.077 C15 9N1 7 9N1 C21 C7 C 0 1 Y N N 11.211 26.571 2.290 0.144 3.166 -3.265 C21 9N1 8 9N1 C22 C8 C 0 1 N N N 14.050 25.130 6.768 1.290 2.080 1.906 C22 9N1 9 9N1 C24 C9 C 0 1 N N N 15.645 22.734 0.416 5.391 0.396 -1.327 C24 9N1 10 9N1 C26 C10 C 0 1 N N N 13.422 19.650 1.918 -3.828 -2.909 0.649 C26 9N1 11 9N1 C28 C11 C 0 1 Y N N 9.741 25.285 3.723 -1.596 4.006 -1.852 C28 9N1 12 9N1 O13 O1 O 0 1 N N N 12.240 21.443 5.485 -2.658 1.021 0.883 O13 9N1 13 9N1 N10 N2 N 0 1 N N N 13.111 21.587 3.404 -2.178 -1.111 0.499 N10 9N1 14 9N1 C18 C12 C 0 1 N N N 12.453 20.407 2.844 -3.590 -1.441 0.292 C18 9N1 15 9N1 C27 C13 C 0 1 N N N 11.191 20.835 2.085 -3.959 -1.206 -1.175 C27 9N1 16 9N1 C33 C14 C 0 1 N N N 10.504 19.634 1.389 -5.434 -1.551 -1.391 C33 9N1 17 9N1 C34 C15 C 0 1 N N N 11.469 18.904 0.462 -5.672 -3.019 -1.034 C34 9N1 18 9N1 C32 C16 C 0 1 N N N 12.723 18.452 1.231 -5.303 -3.254 0.433 C32 9N1 19 9N1 C14 C17 C 0 1 N N N 13.587 23.679 6.508 -0.171 1.624 1.893 C14 9N1 20 9N1 C23 C18 C 0 1 N N N 14.360 22.726 7.430 -0.549 1.086 3.275 C23 9N1 21 9N1 C30 C19 C 0 1 N N N 14.173 23.085 8.908 -0.368 2.189 4.319 C30 9N1 22 9N1 C35 C20 C 0 1 N N N 14.619 24.518 9.191 1.092 2.645 4.332 C35 9N1 23 9N1 C31 C21 C 0 1 N N N 13.901 25.527 8.261 1.471 3.183 2.951 C31 9N1 24 9N1 N2 N3 N 0 1 Y N N 13.371 24.377 4.050 0.128 0.996 -0.451 N2 9N1 25 9N1 C19 C22 C 0 1 Y N N 10.817 24.571 4.239 -1.355 3.015 -0.924 C19 9N1 26 9N1 C29 C23 C 0 1 Y N N 9.933 26.271 2.764 -0.846 4.075 -3.017 C29 9N1 27 9N1 C1 C24 C 0 1 Y N N 14.258 25.075 3.256 1.139 0.447 -1.194 C1 9N1 28 9N1 C11 C25 C 0 1 Y N N 16.588 25.692 3.951 1.290 -1.901 -0.380 C11 9N1 29 9N1 C16 C26 C 0 1 Y N N 17.960 25.484 3.918 2.032 -3.003 -0.019 C16 9N1 30 9N1 O20 O2 O 0 1 N N N 19.852 24.284 3.167 4.146 -4.053 0.280 O20 9N1 31 9N1 C25 C27 C 0 1 N N N 20.438 23.378 2.217 3.417 -5.206 0.705 C25 9N1 32 9N1 C12 C28 C 0 1 Y N N 17.638 23.605 2.438 4.068 -1.811 -0.505 C12 9N1 33 9N1 C9 C29 C 0 1 Y N N 16.268 23.815 2.471 3.332 -0.698 -0.870 C9 9N1 34 9N1 O17 O3 O 0 1 N N N 15.368 23.030 1.785 3.963 0.429 -1.288 O17 9N1 35 9N1 H1 H1 H 0 1 N N N 14.809 23.051 4.862 0.218 -0.359 1.148 H1 9N1 36 9N1 H2 H2 H 0 1 N N N 11.354 27.338 1.543 0.722 3.230 -4.174 H2 9N1 37 9N1 H3 H3 H 0 1 N N N 15.107 25.223 6.479 1.931 1.235 2.155 H3 9N1 38 9N1 H4 H4 H 0 1 N N N 13.442 25.812 6.156 1.559 2.463 0.922 H4 9N1 39 9N1 H5 H5 H 0 1 N N N 14.842 22.103 0.007 5.778 0.197 -0.327 H5 9N1 40 9N1 H6 H6 H 0 1 N N N 15.703 23.671 -0.157 5.718 -0.393 -2.006 H6 9N1 41 9N1 H7 H7 H 0 1 N N N 16.604 22.200 0.343 5.768 1.356 -1.678 H7 9N1 42 9N1 H8 H8 H 0 1 N N N 14.269 19.278 2.513 -3.210 -3.543 0.013 H8 9N1 43 9N1 H9 H9 H 0 1 N N N 13.792 20.340 1.145 -3.566 -3.076 1.693 H9 9N1 44 9N1 H10 H10 H 0 1 N N N 8.742 25.070 4.073 -2.375 4.732 -1.672 H10 9N1 45 9N1 H11 H11 H 0 1 N N N 13.716 22.112 2.806 -1.506 -1.809 0.459 H11 9N1 46 9N1 H12 H12 H 0 1 N N N 12.156 19.733 3.661 -4.208 -0.807 0.928 H12 9N1 47 9N1 H13 H13 H 0 1 N N N 11.469 21.577 1.322 -3.789 -0.160 -1.429 H13 9N1 48 9N1 H14 H14 H 0 1 N N N 10.484 21.287 2.796 -3.341 -1.840 -1.811 H14 9N1 49 9N1 H15 H15 H 0 1 N N N 9.651 20.001 0.800 -6.052 -0.917 -0.755 H15 9N1 50 9N1 H16 H16 H 0 1 N N N 10.145 18.933 2.157 -5.697 -1.383 -2.435 H16 9N1 51 9N1 H17 H17 H 0 1 N N N 11.769 19.580 -0.352 -6.723 -3.264 -1.188 H17 9N1 52 9N1 H18 H18 H 0 1 N N N 10.966 18.021 0.040 -5.054 -3.653 -1.670 H18 9N1 53 9N1 H19 H19 H 0 1 N N N 12.429 17.720 1.998 -5.473 -4.300 0.687 H19 9N1 54 9N1 H20 H20 H 0 1 N N N 13.426 17.983 0.527 -5.921 -2.620 1.069 H20 9N1 55 9N1 H21 H21 H 0 1 N N N 12.520 23.612 6.766 -0.813 2.469 1.645 H21 9N1 56 9N1 H22 H22 H 0 1 N N N 13.999 21.700 7.265 -1.590 0.762 3.266 H22 9N1 57 9N1 H23 H23 H 0 1 N N N 15.430 22.782 7.183 0.093 0.241 3.524 H23 9N1 58 9N1 H24 H24 H 0 1 N N N 13.110 22.982 9.170 -1.010 3.034 4.070 H24 9N1 59 9N1 H25 H25 H 0 1 N N N 14.770 22.396 9.523 -0.638 1.806 5.303 H25 9N1 60 9N1 H26 H26 H 0 1 N N N 15.705 24.593 9.031 1.222 3.431 5.076 H26 9N1 61 9N1 H27 H27 H 0 1 N N N 14.385 24.766 10.237 1.734 1.800 4.581 H27 9N1 62 9N1 H28 H28 H 0 1 N N N 14.339 26.525 8.411 2.511 3.508 2.960 H28 9N1 63 9N1 H29 H29 H 0 1 N N N 12.832 25.553 8.519 0.829 4.028 2.702 H29 9N1 64 9N1 H30 H30 H 0 1 N N N 10.672 23.805 4.986 -1.942 2.965 -0.019 H30 9N1 65 9N1 H31 H31 H 0 1 N N N 9.082 26.813 2.380 -1.045 4.856 -3.736 H31 9N1 66 9N1 H32 H32 H 0 1 N N N 16.186 26.504 4.539 0.211 -1.937 -0.333 H32 9N1 67 9N1 H33 H33 H 0 1 N N N 18.620 26.130 4.479 1.534 -3.904 0.310 H33 9N1 68 9N1 H34 H34 H 0 1 N N N 21.530 23.364 2.349 4.114 -6.003 0.960 H34 9N1 69 9N1 H35 H35 H 0 1 N N N 20.036 22.367 2.379 2.816 -4.955 1.579 H35 9N1 70 9N1 H36 H36 H 0 1 N N N 20.196 23.710 1.197 2.763 -5.540 -0.101 H36 9N1 71 9N1 H37 H37 H 0 1 N N N 18.049 22.795 1.853 5.146 -1.785 -0.553 H37 9N1 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9N1 C24 O17 SING N N 1 9N1 C34 C32 SING N N 2 9N1 C34 C33 SING N N 3 9N1 C32 C26 SING N N 4 9N1 C33 C27 SING N N 5 9N1 O17 C9 SING N N 6 9N1 C26 C18 SING N N 7 9N1 C27 C18 SING N N 8 9N1 C25 O20 SING N N 9 9N1 C21 C29 DOUB Y N 10 9N1 C21 C8 SING Y N 11 9N1 C12 C9 DOUB Y N 12 9N1 C12 C15 SING Y N 13 9N1 C9 C4 SING Y N 14 9N1 N3 C8 SING Y N 15 9N1 N3 C1 DOUB Y N 16 9N1 C29 C28 SING Y N 17 9N1 C8 C7 DOUB Y N 18 9N1 C18 N10 SING N N 19 9N1 C15 O20 SING N N 20 9N1 C15 C16 DOUB Y N 21 9N1 C4 C1 SING N N 22 9N1 C4 C11 DOUB Y N 23 9N1 C1 N2 SING Y N 24 9N1 N10 C5 SING N N 25 9N1 C28 C19 DOUB Y N 26 9N1 C7 N2 SING Y N 27 9N1 C7 C19 SING Y N 28 9N1 C16 C11 SING Y N 29 9N1 N2 C6 SING N N 30 9N1 C5 C6 SING N N 31 9N1 C5 O13 DOUB N N 32 9N1 C6 C14 SING N N 33 9N1 C14 C22 SING N N 34 9N1 C14 C23 SING N N 35 9N1 C22 C31 SING N N 36 9N1 C23 C30 SING N N 37 9N1 C31 C35 SING N N 38 9N1 C30 C35 SING N N 39 9N1 C6 H1 SING N N 40 9N1 C21 H2 SING N N 41 9N1 C22 H3 SING N N 42 9N1 C22 H4 SING N N 43 9N1 C24 H5 SING N N 44 9N1 C24 H6 SING N N 45 9N1 C24 H7 SING N N 46 9N1 C26 H8 SING N N 47 9N1 C26 H9 SING N N 48 9N1 C28 H10 SING N N 49 9N1 N10 H11 SING N N 50 9N1 C18 H12 SING N N 51 9N1 C27 H13 SING N N 52 9N1 C27 H14 SING N N 53 9N1 C33 H15 SING N N 54 9N1 C33 H16 SING N N 55 9N1 C34 H17 SING N N 56 9N1 C34 H18 SING N N 57 9N1 C32 H19 SING N N 58 9N1 C32 H20 SING N N 59 9N1 C14 H21 SING N N 60 9N1 C23 H22 SING N N 61 9N1 C23 H23 SING N N 62 9N1 C30 H24 SING N N 63 9N1 C30 H25 SING N N 64 9N1 C35 H26 SING N N 65 9N1 C35 H27 SING N N 66 9N1 C31 H28 SING N N 67 9N1 C31 H29 SING N N 68 9N1 C19 H30 SING N N 69 9N1 C29 H31 SING N N 70 9N1 C11 H32 SING N N 71 9N1 C16 H33 SING N N 72 9N1 C25 H34 SING N N 73 9N1 C25 H35 SING N N 74 9N1 C25 H36 SING N N 75 9N1 C12 H37 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9N1 SMILES ACDLabs 12.01 "n3c5c(n(C(C(=O)NC1CCCCC1)C2CCCCC2)c3c4ccc(OC)cc4OC)cccc5" 9N1 InChI InChI 1.03 "InChI=1S/C29H37N3O3/c1-34-22-17-18-23(26(19-22)35-2)28-31-24-15-9-10-16-25(24)32(28)27(20-11-5-3-6-12-20)29(33)30-21-13-7-4-8-14-21/h9-10,15-21,27H,3-8,11-14H2,1-2H3,(H,30,33)/t27-/m0/s1" 9N1 InChIKey InChI 1.03 VLEYYMSDWNFSEN-MHZLTWQESA-N 9N1 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(c(OC)c1)c2nc3ccccc3n2[C@@H](C4CCCCC4)C(=O)NC5CCCCC5" 9N1 SMILES CACTVS 3.385 "COc1ccc(c(OC)c1)c2nc3ccccc3n2[CH](C4CCCCC4)C(=O)NC5CCCCC5" 9N1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1ccc(c(c1)OC)c2nc3ccccc3n2[C@@H](C4CCCCC4)C(=O)NC5CCCCC5" 9N1 SMILES "OpenEye OEToolkits" 2.0.6 "COc1ccc(c(c1)OC)c2nc3ccccc3n2C(C4CCCCC4)C(=O)NC5CCCCC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9N1 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-N,2-dicyclohexyl-2-[2-(2,4-dimethoxyphenyl)-1H-benzimidazol-1-yl]acetamide" 9N1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-~{N},2-dicyclohexyl-2-[2-(2,4-dimethoxyphenyl)benzimidazol-1-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9N1 "Create component" 2017-05-19 RCSB 9N1 "Initial release" 2017-07-05 RCSB #