data_9O9 # _chem_comp.id 9O9 _chem_comp.name "1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H22 N3 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-06-12 _chem_comp.pdbx_modified_date 2019-06-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 455.356 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6A1H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9O9 C4 C1 C 0 1 N N N 169.146 -8.652 135.916 -4.690 -2.551 -0.514 C4 9O9 1 9O9 C5 C2 C 0 1 N N N 167.946 -8.678 136.615 -4.073 -1.238 -0.263 C5 9O9 2 9O9 C6 C3 C 0 1 N N N 166.760 -8.869 135.839 -2.749 -1.216 0.367 C6 9O9 3 9O9 N1 N1 N 0 1 N N N 166.821 -9.029 134.486 -2.178 -2.373 0.676 N1 9O9 4 9O9 N3 N2 N 0 1 N N N 169.162 -8.828 134.576 -3.988 -3.646 -0.138 N3 9O9 5 9O9 C2 C4 C 0 1 N N N 168.009 -9.016 133.827 -2.778 -3.533 0.428 C2 9O9 6 9O9 CAA C5 C 0 1 Y N N 165.156 -8.666 140.606 -3.998 3.561 -0.386 CAA 9O9 7 9O9 CAB C6 C 0 1 Y N N 164.039 -8.909 139.806 -2.744 3.559 0.212 CAB 9O9 8 9O9 CAC C7 C 0 1 Y N N 164.177 -9.022 138.428 -2.126 2.373 0.545 CAC 9O9 9 9O9 CAD C8 C 0 1 Y N N 165.398 -8.865 137.800 -2.761 1.161 0.283 CAD 9O9 10 9O9 CAE C9 C 0 1 Y N N 166.559 -8.617 138.609 -4.033 1.166 -0.323 CAE 9O9 11 9O9 CAF C10 C 0 1 Y N N 166.386 -8.552 140.005 -4.641 2.388 -0.653 CAF 9O9 12 9O9 CAJ C11 C 0 1 N N N 167.821 -8.505 137.995 -4.696 -0.054 -0.598 CAJ 9O9 13 9O9 CAO C12 C 0 1 N N N 165.020 -8.597 142.081 -4.653 4.871 -0.741 CAO 9O9 14 9O9 CAP C13 C 0 1 N N N 162.744 -9.089 140.360 -2.051 4.866 0.498 CAP 9O9 15 9O9 CAS C14 C 0 1 N N N 164.323 -9.066 135.560 -0.818 -0.001 1.247 CAS 9O9 16 9O9 CAT C15 C 0 1 N N S 163.866 -10.461 135.350 0.263 -0.035 0.165 CAT 9O9 17 9O9 CAU C16 C 0 1 N N S 162.503 -10.594 134.699 1.644 -0.011 0.822 CAU 9O9 18 9O9 CAV C17 C 0 1 N N R 161.378 -10.129 135.572 2.725 -0.045 -0.260 CAV 9O9 19 9O9 CAW C18 C 0 1 N N N 160.067 -10.825 135.026 4.107 -0.021 0.397 CAW 9O9 20 9O9 NAG N3 N 0 1 N N N 165.554 -8.938 136.412 -2.140 -0.024 0.618 NAG 9O9 21 9O9 O2 O1 O 0 1 N N N 168.077 -9.165 132.602 -2.195 -4.556 0.739 O2 9O9 22 9O9 O4 O2 O 0 1 N N N 170.255 -8.454 136.486 -5.786 -2.648 -1.033 O4 9O9 23 9O9 OAX O3 O 0 1 N N N 158.959 -10.474 135.773 5.114 0.064 -0.613 OAX 9O9 24 9O9 OAY O4 O 0 1 N N N 164.764 -11.203 134.579 0.125 -1.229 -0.608 OAY 9O9 25 9O9 OAZ O5 O 0 1 N N N 161.635 -10.659 136.918 2.587 -1.239 -1.033 OAZ 9O9 26 9O9 OBA O6 O 0 1 N N N 162.494 -9.770 133.510 1.783 1.183 1.595 OBA 9O9 27 9O9 OBC O7 O 0 1 N N N 159.334 -11.143 138.141 7.135 -1.280 0.396 OBC 9O9 28 9O9 OBD O8 O 0 1 N N N 157.085 -10.672 137.127 7.518 0.337 -1.641 OBD 9O9 29 9O9 OBE O9 O 0 1 N N N 158.251 -12.851 136.660 6.961 1.225 0.656 OBE 9O9 30 9O9 PBB P1 P 0 1 N N N 158.407 -11.385 136.982 6.688 0.111 -0.280 PBB 9O9 31 9O9 H2 H2 H 0 1 N N N 170.043 -8.823 134.104 -4.366 -4.527 -0.285 H2 9O9 32 9O9 H3 H3 H 0 1 N N N 163.304 -9.239 137.830 -1.151 2.384 1.009 H3 9O9 33 9O9 H4 H4 H 0 1 N N N 167.256 -8.407 140.629 -5.616 2.400 -1.117 H4 9O9 34 9O9 H5 H5 H 0 1 N N N 168.694 -8.285 138.592 -5.671 -0.058 -1.063 H5 9O9 35 9O9 H6 H6 H 0 1 N N N 165.137 -9.604 142.508 -4.369 5.156 -1.754 H6 9O9 36 9O9 H7 H7 H 0 1 N N N 165.796 -7.933 142.490 -5.736 4.762 -0.684 H7 9O9 37 9O9 H8 H8 H 0 1 N N N 164.026 -8.202 142.339 -4.328 5.641 -0.042 H8 9O9 38 9O9 H9 H9 H 0 1 N N N 162.588 -10.153 140.590 -2.326 5.213 1.495 H9 9O9 39 9O9 H10 H10 H 0 1 N N N 162.655 -8.497 141.283 -0.972 4.724 0.448 H10 9O9 40 9O9 H11 H11 H 0 1 N N N 161.986 -8.756 139.636 -2.355 5.608 -0.241 H11 9O9 41 9O9 H12 H12 H 0 1 N N N 164.538 -8.622 134.577 -0.709 -0.869 1.897 H12 9O9 42 9O9 H13 H13 H 0 1 N N N 163.509 -8.507 136.045 -0.712 0.910 1.837 H13 9O9 43 9O9 H14 H14 H 0 1 N N N 163.792 -10.931 136.342 0.154 0.833 -0.485 H14 9O9 44 9O9 H15 H15 H 0 1 N N N 162.338 -11.647 134.426 1.753 -0.879 1.472 H15 9O9 45 9O9 H16 H16 H 0 1 N N N 161.273 -9.034 135.563 2.617 0.823 -0.910 H16 9O9 46 9O9 H17 H17 H 0 1 N N N 159.907 -10.517 133.982 4.180 0.844 1.057 H17 9O9 47 9O9 H18 H18 H 0 1 N N N 160.197 -11.916 135.070 4.249 -0.933 0.977 H18 9O9 48 9O9 H19 H19 H 0 1 N N N 165.633 -11.143 134.958 0.210 -2.043 -0.094 H19 9O9 49 9O9 H20 H20 H 0 1 N N N 160.940 -10.385 137.505 2.672 -2.053 -0.518 H20 9O9 50 9O9 H21 H21 H 0 1 N N N 161.648 -9.837 133.084 1.697 1.997 1.081 H21 9O9 51 9O9 H22 H22 H 0 1 N N N 159.659 -11.974 138.466 6.984 -2.055 -0.162 H22 9O9 52 9O9 H23 H23 H 0 1 N N N 156.375 -11.288 136.986 8.476 0.376 -1.516 H23 9O9 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9O9 O2 C2 DOUB N N 1 9O9 OBA CAU SING N N 2 9O9 C2 N1 SING N N 3 9O9 C2 N3 SING N N 4 9O9 N1 C6 DOUB N N 5 9O9 N3 C4 SING N N 6 9O9 OAY CAT SING N N 7 9O9 CAU CAT SING N N 8 9O9 CAU CAV SING N N 9 9O9 CAW CAV SING N N 10 9O9 CAW OAX SING N N 11 9O9 CAT CAS SING N N 12 9O9 CAS NAG SING N N 13 9O9 CAV OAZ SING N N 14 9O9 OAX PBB SING N N 15 9O9 C6 NAG SING N N 16 9O9 C6 C5 SING N N 17 9O9 C4 O4 DOUB N N 18 9O9 C4 C5 SING N N 19 9O9 NAG CAD SING N N 20 9O9 C5 CAJ DOUB N N 21 9O9 OBE PBB DOUB N N 22 9O9 PBB OBD SING N N 23 9O9 PBB OBC SING N N 24 9O9 CAD CAC DOUB Y N 25 9O9 CAD CAE SING Y N 26 9O9 CAJ CAE SING N N 27 9O9 CAC CAB SING Y N 28 9O9 CAE CAF DOUB Y N 29 9O9 CAB CAP SING N N 30 9O9 CAB CAA DOUB Y N 31 9O9 CAF CAA SING Y N 32 9O9 CAA CAO SING N N 33 9O9 N3 H2 SING N N 34 9O9 CAC H3 SING N N 35 9O9 CAF H4 SING N N 36 9O9 CAJ H5 SING N N 37 9O9 CAO H6 SING N N 38 9O9 CAO H7 SING N N 39 9O9 CAO H8 SING N N 40 9O9 CAP H9 SING N N 41 9O9 CAP H10 SING N N 42 9O9 CAP H11 SING N N 43 9O9 CAS H12 SING N N 44 9O9 CAS H13 SING N N 45 9O9 CAT H14 SING N N 46 9O9 CAU H15 SING N N 47 9O9 CAV H16 SING N N 48 9O9 CAW H17 SING N N 49 9O9 CAW H18 SING N N 50 9O9 OAY H19 SING N N 51 9O9 OAZ H20 SING N N 52 9O9 OBA H21 SING N N 53 9O9 OBC H22 SING N N 54 9O9 OBD H23 SING N N 55 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9O9 SMILES ACDLabs 12.01 "C3(=O)C2=Cc1c(cc(c(C)c1)C)N(C2=NC(N3)=O)CC(C(C(O)COP(O)(O)=O)O)O" 9O9 InChI InChI 1.03 "InChI=1S/C18H22N3O9P/c1-8-3-10-5-11-16(19-18(26)20-17(11)25)21(12(10)4-9(8)2)6-13(22)15(24)14(23)7-30-31(27,28)29/h3-5,13-15,22-24H,6-7H2,1-2H3,(H,20,25,26)(H2,27,28,29)/t13-,14+,15-/m0/s1" 9O9 InChIKey InChI 1.03 LAWFKZVKVIYTAR-ZNMIVQPWSA-N 9O9 SMILES_CANONICAL CACTVS 3.385 "Cc1cc2C=C3C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C" 9O9 SMILES CACTVS 3.385 "Cc1cc2C=C3C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C" 9O9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=C2)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O" 9O9 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3=C2)CC(C(C(COP(=O)(O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 9O9 "SYSTEMATIC NAME" ACDLabs 12.01 "1-deoxy-1-(7,8-dimethyl-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-5-O-phosphono-D-ribitol" 9O9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{S})-5-[7,8-dimethyl-2,4-bis(oxidanylidene)pyrimido[4,5-b]quinolin-10-yl]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9O9 "Create component" 2018-06-12 PDBJ 9O9 "Initial release" 2019-05-29 RCSB 9O9 "Modify model coordinates code" 2019-06-19 PDBj ##