data_9P3 # _chem_comp.id 9P3 _chem_comp.name "1-[(1aR,11R)-11-acetyl-8,9-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]oxazireno[3,2-e]pteridin-11-ium-6(2H)-yl]-1-deoxy-5-O-phosphono-D-ribitol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H24 N4 O11 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2018-06-15 _chem_comp.pdbx_modified_date 2019-06-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 515.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 9P3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6A1W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 9P3 CAA C1 C 0 1 N N N -8.790 -29.174 -32.686 2.029 1.196 0.489 CAA 9P3 1 9P3 CAB C2 C 0 1 N N R -8.600 -30.333 -31.895 3.288 1.233 -0.343 CAB 9P3 2 9P3 CAC C3 C 0 1 N N N -8.603 -31.578 -32.506 4.098 2.494 -0.172 CAC 9P3 3 9P3 CAE C4 C 0 1 N N N -9.173 -30.559 -34.570 2.253 3.460 0.907 CAE 9P3 4 9P3 CAH C5 C 0 1 Y N N -8.534 -27.748 -30.801 2.051 -1.189 0.382 CAH 9P3 5 9P3 CAI C6 C 0 1 Y N N -8.283 -28.842 -30.032 3.311 -1.219 -0.196 CAI 9P3 6 9P3 CAK C7 C 0 1 Y N N -9.026 -26.639 -30.114 1.422 -2.385 0.720 CAK 9P3 7 9P3 CAL C8 C 0 1 Y N N -8.971 -26.572 -28.716 2.061 -3.589 0.505 CAL 9P3 8 9P3 CAM C9 C 0 1 Y N N -8.528 -27.663 -27.974 3.329 -3.611 -0.045 CAM 9P3 9 9P3 CAN C10 C 0 1 Y N N -8.143 -28.805 -28.650 3.953 -2.428 -0.395 CAN 9P3 10 9P3 CAO C11 C 0 1 N N N -8.464 -27.626 -26.575 4.033 -4.926 -0.264 CAO 9P3 11 9P3 CAP C12 C 0 1 N N N -9.369 -25.410 -28.057 1.376 -4.880 0.871 CAP 9P3 12 9P3 CAT C13 C 0 1 N N N -8.993 -26.685 -32.931 0.085 -0.009 1.312 CAT 9P3 13 9P3 CAU C14 C 0 1 N N S -10.479 -26.427 -33.185 -0.970 0.037 0.205 CAU 9P3 14 9P3 CAV C15 C 0 1 N N S -10.743 -25.087 -33.863 -2.366 0.013 0.830 CAV 9P3 15 9P3 CAW C16 C 0 1 N N R -10.309 -23.961 -32.927 -3.421 0.058 -0.277 CAW 9P3 16 9P3 CAX C17 C 0 1 N N N -10.816 -22.636 -33.534 -4.818 0.034 0.348 CAX 9P3 17 9P3 CBG C18 C 0 1 N N N -6.480 -29.864 -31.019 5.336 -0.068 -0.673 CBG 9P3 18 9P3 CBI C19 C 0 1 N N N -5.442 -28.997 -30.294 6.051 0.150 -1.981 CBI 9P3 19 9P3 NAD N1 N 0 1 N N N -8.925 -31.707 -33.841 3.506 3.546 0.436 NAD 9P3 20 9P3 NAF N2 N 0 1 N N N -9.102 -29.344 -33.987 1.571 2.313 0.993 NAF 9P3 21 9P3 NAG N3 N 0 1 N N N -8.724 -27.916 -32.133 1.422 0.015 0.713 NAG 9P3 22 9P3 NAJ N4 N 1 1 N N R -7.825 -29.807 -30.783 3.940 -0.040 -0.626 NAJ 9P3 23 9P3 OAQ O1 O 0 1 N N N -8.379 -32.589 -31.841 5.243 2.562 -0.567 OAQ 9P3 24 9P3 OAR O2 O 0 1 N N N -9.386 -30.678 -35.776 1.707 4.483 1.277 OAR 9P3 25 9P3 OAS O3 O 0 1 N N N -8.750 -30.712 -30.529 3.224 0.706 -1.672 OAS 9P3 26 9P3 OAY O4 O 0 1 N N N -10.456 -21.560 -32.679 -5.801 -0.041 -0.686 OAY 9P3 27 9P3 OAZ O5 O 0 1 N N N -11.093 -27.436 -33.988 -0.810 1.236 -0.557 OAZ 9P3 28 9P3 OBA O6 O 0 1 N N N -10.744 -24.184 -31.577 -3.262 1.257 -1.038 OBA 9P3 29 9P3 OBB O7 O 0 1 N N N -9.867 -25.010 -35.009 -2.526 -1.186 1.591 OBB 9P3 30 9P3 OBD O8 O 0 1 N N N -10.707 -19.550 -31.207 -7.841 1.303 0.286 OBD 9P3 31 9P3 OBE O9 O 0 1 N N N -11.117 -21.941 -30.269 -8.182 -0.299 -1.770 OBE 9P3 32 9P3 OBF O10 O 0 1 N N N -12.819 -20.803 -31.781 -7.682 -1.204 0.532 OBF 9P3 33 9P3 OBH O11 O 0 1 N N N -5.979 -30.666 -31.997 5.970 -0.267 0.336 OBH 9P3 34 9P3 PBC P1 P 0 1 N N N -11.375 -20.944 -31.473 -7.383 -0.085 -0.389 PBC 9P3 35 9P3 H1 H1 H 0 1 N N N -9.456 -25.818 -30.669 0.431 -2.370 1.151 H1 9P3 36 9P3 H2 H2 H 0 1 N N N -7.741 -29.652 -28.115 4.944 -2.447 -0.825 H2 9P3 37 9P3 H3 H3 H 0 1 N N N -9.419 -27.975 -26.154 3.794 -5.305 -1.257 H3 9P3 38 9P3 H4 H4 H 0 1 N N N -7.650 -28.279 -26.228 5.110 -4.780 -0.180 H4 9P3 39 9P3 H5 H5 H 0 1 N N N -8.273 -26.595 -26.244 3.704 -5.643 0.488 H5 9P3 40 9P3 H6 H6 H 0 1 N N N -10.444 -25.466 -27.831 0.802 -5.242 0.018 H6 9P3 41 9P3 H7 H7 H 0 1 N N N -8.802 -25.308 -27.120 2.125 -5.623 1.146 H7 9P3 42 9P3 H8 H8 H 0 1 N N N -9.175 -24.539 -28.700 0.707 -4.710 1.715 H8 9P3 43 9P3 H9 H9 H 0 1 N N N -8.487 -26.784 -33.903 -0.036 0.856 1.965 H9 9P3 44 9P3 H10 H10 H 0 1 N N N -8.579 -25.822 -32.388 -0.037 -0.923 1.892 H10 9P3 45 9P3 H11 H11 H 0 1 N N N -10.980 -26.404 -32.206 -0.849 -0.827 -0.448 H11 9P3 46 9P3 H12 H12 H 0 1 N N N -11.803 -24.985 -34.139 -2.487 0.877 1.483 H12 9P3 47 9P3 H13 H13 H 0 1 N N N -9.210 -23.926 -32.940 -3.301 -0.806 -0.930 H13 9P3 48 9P3 H14 H14 H 0 1 N N N -10.360 -22.487 -34.524 -4.909 -0.835 1.000 H14 9P3 49 9P3 H15 H15 H 0 1 N N N -11.911 -22.674 -33.636 -4.971 0.942 0.931 H15 9P3 50 9P3 H16 H16 H 0 1 N N N -4.444 -29.190 -30.714 5.499 0.873 -2.582 H16 9P3 51 9P3 H17 H17 H 0 1 N N N -5.696 -27.935 -30.426 7.055 0.529 -1.788 H17 9P3 52 9P3 H18 H18 H 0 1 N N N -5.442 -29.244 -29.222 6.118 -0.795 -2.521 H18 9P3 53 9P3 H19 H19 H 0 1 N N N -8.978 -32.608 -34.271 3.996 4.377 0.534 H19 9P3 54 9P3 H20 H20 H 0 1 N N N -10.947 -28.288 -33.593 -0.905 2.047 -0.038 H20 9P3 55 9P3 H21 H21 H 0 1 N N N -10.456 -23.464 -31.028 -3.356 2.068 -0.520 H21 9P3 56 9P3 H22 H22 H 0 1 N N N -10.004 -24.184 -35.458 -2.431 -1.997 1.073 H22 9P3 57 9P3 H23 H23 H 0 1 N N N -11.359 -18.864 -31.293 -7.676 2.082 -0.263 H23 9P3 58 9P3 H24 H24 H 0 1 N N N -11.947 -22.277 -29.952 -9.143 -0.335 -1.668 H24 9P3 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 9P3 OAR CAE DOUB N N 1 9P3 OBB CAV SING N N 2 9P3 CAE NAF SING N N 3 9P3 CAE NAD SING N N 4 9P3 OAZ CAU SING N N 5 9P3 NAF CAA DOUB N N 6 9P3 CAV CAU SING N N 7 9P3 CAV CAW SING N N 8 9P3 NAD CAC SING N N 9 9P3 CAX CAW SING N N 10 9P3 CAX OAY SING N N 11 9P3 CAU CAT SING N N 12 9P3 CAT NAG SING N N 13 9P3 CAW OBA SING N N 14 9P3 CAA NAG SING N N 15 9P3 CAA CAB SING N N 16 9P3 OAY PBC SING N N 17 9P3 CAC CAB SING N N 18 9P3 CAC OAQ DOUB N N 19 9P3 NAG CAH SING N N 20 9P3 OBH CBG DOUB N N 21 9P3 CAB NAJ SING N N 22 9P3 CAB OAS SING N N 23 9P3 OBF PBC DOUB N N 24 9P3 PBC OBD SING N N 25 9P3 PBC OBE SING N N 26 9P3 CBG NAJ SING N N 27 9P3 CBG CBI SING N N 28 9P3 CAH CAK SING Y N 29 9P3 CAH CAI DOUB Y N 30 9P3 NAJ OAS SING N N 31 9P3 NAJ CAI SING N N 32 9P3 CAK CAL DOUB Y N 33 9P3 CAI CAN SING Y N 34 9P3 CAL CAP SING N N 35 9P3 CAL CAM SING Y N 36 9P3 CAN CAM DOUB Y N 37 9P3 CAM CAO SING N N 38 9P3 CAK H1 SING N N 39 9P3 CAN H2 SING N N 40 9P3 CAO H3 SING N N 41 9P3 CAO H4 SING N N 42 9P3 CAO H5 SING N N 43 9P3 CAP H6 SING N N 44 9P3 CAP H7 SING N N 45 9P3 CAP H8 SING N N 46 9P3 CAT H9 SING N N 47 9P3 CAT H10 SING N N 48 9P3 CAU H11 SING N N 49 9P3 CAV H12 SING N N 50 9P3 CAW H13 SING N N 51 9P3 CAX H14 SING N N 52 9P3 CAX H15 SING N N 53 9P3 CBI H16 SING N N 54 9P3 CBI H17 SING N N 55 9P3 CBI H18 SING N N 56 9P3 NAD H19 SING N N 57 9P3 OAZ H20 SING N N 58 9P3 OBA H21 SING N N 59 9P3 OBB H22 SING N N 60 9P3 OBD H23 SING N N 61 9P3 OBE H24 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 9P3 SMILES ACDLabs 12.01 "C2=4N(c1cc(C)c(C)cc1[N+]3(C2(O3)C(=O)NC(N=4)=O)C(C)=O)CC(C(C(O)COP(O)(O)=O)O)O" 9P3 InChI InChI 1.03 "InChI=1S/C19H23N4O11P/c1-8-4-11-12(5-9(8)2)23(10(3)24)19(34-23)16(20-18(29)21-17(19)28)22(11)6-13(25)15(27)14(26)7-33-35(30,31)32/h4-5,13-15,25-27H,6-7H2,1-3H3,(H2-,21,28,29,30,31,32)/p+1/t13-,14+,15-,19+,23+/m0/s1" 9P3 InChIKey InChI 1.03 CNQDYQZVEZBXRL-PIOSDFFKSA-O 9P3 SMILES_CANONICAL CACTVS 3.385 "CC(=O)[N@+]12O[C@]13C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c4cc(C)c(C)cc24" 9P3 SMILES CACTVS 3.385 "CC(=O)[N+]12O[C]13C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c4cc(C)c(C)cc24" 9P3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)[N@@+]3([C@]4(O3)C(=O)NC(=O)N=C4N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)C(=O)C" 9P3 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc2c(cc1C)[N+]3(C4(O3)C(=O)NC(=O)N=C4N2CC(C(C(COP(=O)(O)O)O)O)O)C(=O)C" # _pdbx_chem_comp_identifier.comp_id 9P3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "1-[(1aR,11R)-11-acetyl-8,9-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]oxazireno[3,2-e]pteridin-11-ium-6(2H)-yl]-1-deoxy-5-O-phosphono-D-ribitol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 9P3 "Create component" 2018-06-15 PDBJ 9P3 "Initial release" 2019-06-19 RCSB ##